BAC Information

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BAC

Clone NameB6Ng01-121F08
Chromosome14 (Build37)
Map Location 94,500,709 - 94,626,503
singlet/doubletdoublet
Overlap geneLOC100043356
Upstream genePcdh9, LOC668566
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121F08.bB6Ng01-121F08.g
ACCDH925043DH925044
length1,1771,109
definitionDH925043|Mus musculus domesticus DNA, BAC clone: B6Ng01-121F08, 5' end.DH925044|Mus musculus domesticus DNA, BAC clone: B6Ng01-121F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,625,312 - 94,626,503)(94,500,709 - 94,501,841)
sequence
gaattcataataccaaatctggaaaaggagtgttccttagggttcactag
ccagccaacctacaattcctcgtaagcttcaggccatgaagagaatctaa
caaaaaaaaaaaaaaaagatgagtagtgtctgaggcacaatacccaatct
ttccacctgtccttcatgcttgtgcacctctgagcatgcatgcttgctca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacgcgcgcgcgcatgacacatgcatatgtgtatgtatcagcacac
aacacagaaagaaaaataaatcaataaaacaaatatgcttataaaataat
acttaagagtatgtacataatttaaaattaaaatgcatctttttagaata
gatttaggaaaacagaaacttactgctataaaacaaagtcatgctatttg
gctatccaccatataatggctctccaaagaagcaaatcttttctttagga
actttgtatacccttctttacagagtaaattcatttaagaatcttttaaa
gaaagatgtgtatgttttgggtaggcctaattttatgcaaacaagaggat
gacacggttgtaaattagagactggtatttgaacatgatactattttggc
tttgctctagaaggaataagccattaactagagaatttctggttactagt
tgacaaaaagttaaaaaaataaacattcaaaacaaaaacaaacaaacaaa
caaccctcccagaatctgattgtcccttaaacctttaaagcagtgtgtag
ctctgcccataacttaattctgtttcattgaatcctattttagctttcta
actacctgaaggcaaatacttacatattctttcaatgacacaatcattat
ttcccaaaacataaatagaaaaattctgccattgtcttattactctaata
tgttcataagaaaaatcatatgagtgctgtttgctaaagtattttagaaa
attttcatggatattgtatttcttctaaacatagccaaaaatactttcta
acattgtctagttatgtccccttttaaaaaaatgaaacatcattttattg
aggggaaatcataggcaaatctagaaaataataaagacatggattttatt
attaccttaatttaatacaaaggatat
gaattcatggctttctattactgccccttcctccagcggggcagaaatat
ggaatattgaaatgaggtattatgtcaccaaaaataatatatttacgaag
gatccatataagaaaaatgaagagagagccatacaagttcagtgacatgg
tttaatgacagctgttttagcaaatgaaaataatttctgagaggtctgct
aaaatcttttctacgagaatgtacacagaagtgcaagcattcatataatg
ttttatgcaagactgtaattctataaggtgaaatgaatgtattatctaca
gttacgaaagggttaatgatttctagactacaaaataaaaaaaaattgaa
ggtaattttagtagtaaagtttctaaaagttagggattgttcttattttt
ttagagaggatgtaatttgggttcattaaggattttctaatatttctggg
aaaaaaggacagaataattataatttattttttaactagtacaaaggaaa
aatacaaccattttgggaaaaataattctttagttgttccacctcaaagg
tatcattgtcttcagctgtcatttcattattaccatagcaacctgcagtt
tggcttgtgctataagaatacacttaagcctagaaggatactgacagcct
agtcaatatttttatttctttattaaattgctaagaagttagccagggag
tggtggcgcacacctttaatcccaacacttgtgaggcagaagcatgcaaa
tttctgaatttgaggccagcttggtctacagagtgagttccaggacagcc
agggctacacagacaaaccctgtcacgaaacaccacccccctgcaaaaac
aaacaaacaaaccaaaaaccaaaccaaaccaaaaaaattactataagaca
gaattatgaaagaaagctgtctgagtttgtattttaagtgaaatggagat
agatcaaggaatataatgatatttaaaagtctagcaaatataaatatatt
cttcagagtgaatggtgggaaactgatacattaaacatttagggtctttt
catcatgttaactagagcggcagatagtactatcaaataaagcatcactc
ataagtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94625312_94626503
seq2: B6Ng01-121F08.b_48_1224 (reverse)

seq1  ATATCATTTTGTATTAAAAATGTAGGTGATTATGATAAAAAATACCATGT  50
      |||||  ||||||||  ||||  |||| || ||     ||||| ||||||
seq2  ATATC-CTTTGTATT--AAATTAAGGTAATAAT-----AAAAT-CCATGT  41

seq1  CTTATTAATTTTCTAGATTTTGCCTATGATATCTCCTTCAATAAAATGGA  100
      |||  | |||||||||| |||||||||||| || || |||||||||| ||
seq2  CTTTATTATTTTCTAGA-TTTGCCTATGATTTC-CCCTCAATAAAAT-GA  88

seq1  TGTTTCATATCTATAAAAGGGGAACATAACTAGACAATGTTAGAAAGTAT  150
      |||||||| | | ||||||||| |||||||||||||||||||||||||||
seq2  TGTTTCATTTTTTTAAAAGGGG-ACATAACTAGACAATGTTAGAAAGTAT  137

seq1  TTTTGGCTATGTTTAGAAGAAATACAATATTCCATGAAAATTTTCTAAAA  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTGGCTATGTTTAGAAGAAATACAATA-TCCATGAAAATTTTCTAAAA  186

seq1  TACCTTTAGCAAACAGCACTCATATGATTTTTCTTATGAACATATTAGAG  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-CTTTAGCAAACAGCACTCATATGATTTTTCTTATGAACATATTAGAG  235

seq1  TAATAAGACAATGGCAGAATTTTTCTATTTATGTTTTGGGAAATAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGACAATGGCAGAATTTTTCTATTTATGTTTTGGGAAATAATGAT  285

seq1  TGTGTCATTGAAAGAATATGTAAGTATTTGCCTTCAGGTAGTTAGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATTGAAAGAATATGTAAGTATTTGCCTTCAGGTAGTTAGAAAGC  335

seq1  TAAAATAGGATTCAATGAAACAGAATTAAGTTATGGGCAGAGCTACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGATTCAATGAAACAGAATTAAGTTATGGGCAGAGCTACACAC  385

seq1  TGCTTTAAAGGTTTAAGGGACAATCAGATTCTGGGAGGGTTGTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAGGTTTAAGGGACAATCAGATTCTGGGAGGGTTGTTTGTTTG  435

seq1  TTTGTTTTTGTTTTGAATGTTTATTTTTTTAACTTTTTGTCAACTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTGAATGTTTATTTTTTTAACTTTTTGTCAACTAGTAA  485

seq1  CCAGAAATTCTCTAGTTAATGGCTTATTCCTTCTAGAGCAAAGCCAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATTCTCTAGTTAATGGCTTATTCCTTCTAGAGCAAAGCCAAAAT  535

seq1  AGTATCATGTTCAAATACCAGTCTCTAATTTACAACCGTGTCATCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATGTTCAAATACCAGTCTCTAATTTACAACCGTGTCATCCTCTT  585

seq1  GTTTGCATAAAATTAGGCCTACCCAAAACATACACATCTTTCTTTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATAAAATTAGGCCTACCCAAAACATACACATCTTTCTTTAAAAG  635

seq1  ATTCTTAAATGAATTTACTCTGTAAAGAAGGGTATACAAAGTTCCTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAATGAATTTACTCTGTAAAGAAGGGTATACAAAGTTCCTAAAG  685

seq1  AAAAGATTTGCTTCTTTGGAGAGCCATTATATGGTGGATAGCCAAATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTGCTTCTTTGGAGAGCCATTATATGGTGGATAGCCAAATAGC  735

seq1  ATGACTTTGTTTTATAGCAGTAAGTTTCTGTTTTCCTAAATCTATTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTGTTTTATAGCAGTAAGTTTCTGTTTTCCTAAATCTATTCTAA  785

seq1  AAAGATGCATTTTAATTTTAAATTATGTACATACTCTTAAGTATTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCATTTTAATTTTAAATTATGTACATACTCTTAAGTATTATTTT  835

seq1  ATAAGCATATTTGTTTTATTGATTTATTTTTCTTTCTGTGTTGTGTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATATTTGTTTTATTGATTTATTTTTCTTTCTGTGTTGTGTGCTG  885

seq1  ATACATACACATATGCATGTGTCATGCGCGCGCGCGTGTGTGTGTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACATATGCATGTGTCATGCGCGCGCGCGTGTGTGTGTGTGTG  935

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCAAG  985

seq1  CATGCATGCTCAGAGGTGCACAAGCATGAAGGACAGGTGGAAAGATTGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCTCAGAGGTGCACAAGCATGAAGGACAGGTGGAAAGATTGGG  1035

seq1  TATTGTGCCTCAGACACTACTCATCTTTTTTTTTTTTTTTTGTTAGATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCCTCAGACACTACTCATCTTTTTTTTTTTTTTTTGTTAGATTC  1085

seq1  TCTTCATGGCCTGAAGCTTACGAGGAATTGTAGGTTGGCTGGCTAGTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGCCTGAAGCTTACGAGGAATTGTAGGTTGGCTGGCTAGTGAA  1135

seq1  CCCTAAGGAACACTCCTTTTCCAGATTTGGTATTATGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGAACACTCCTTTTCCAGATTTGGTATTATGAATTC  1177

seq1: chr14_94500709_94501841
seq2: B6Ng01-121F08.g_65_1173

seq1  GAATTCATGGCTTTCTATTACTGCCCCTTCCTCCAGCGGGGCAGAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTTTCTATTACTGCCCCTTCCTCCAGCGGGGCAGAAATAT  50

seq1  GGAATATTGAAATGAGGTATTATGTCACCAAAAATAATATATTTACGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGAAATGAGGTATTATGTCACCAAAAATAATATATTTACGAAG  100

seq1  GATCCATATAAGAAAAATGAAGAGAGAGCCATACAAGTTCAGTGACATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATATAAGAAAAATGAAGAGAGAGCCATACAAGTTCAGTGACATGG  150

seq1  TTTAATGACAGCTGTTTTAGCAAATGAAAATAATTTCTGAGAGGTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGACAGCTGTTTTAGCAAATGAAAATAATTTCTGAGAGGTCTGCT  200

seq1  AAAATCTTTTCTACGAGAATGTACACAGAAGTGCAAGCATTCATATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTCTACGAGAATGTACACAGAAGTGCAAGCATTCATATAATG  250

seq1  TTTTATGCAAGACTGTAATTCTATAAGGTGAAATGAATGTATTATCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCAAGACTGTAATTCTATAAGGTGAAATGAATGTATTATCTACA  300

seq1  GTTACGAAAGGGTTAATGATTTCTAGACTACAAAATAAAAAAAAATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGAAAGGGTTAATGATTTCTAGACTACAAAATAAAAAAAAATTGAA  350

seq1  GGTAATTTTAGTAGTAAAGTTTCTAAAAGTTAGGGATTGTTCTTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTAGTAGTAAAGTTTCTAAAAGTTAGGGATTGTTCTTATTTTT  400

seq1  TTAGAGAGGATGTAATTTGGGTTCATTAAGGATTTTCTAATATTTCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGATGTAATTTGGGTTCATTAAGGATTTTCTAATATTTCTGGG  450

seq1  AAAAAAGGACAGAATAATTATAATTTATTTTTTAACTAGTACAAAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGACAGAATAATTATAATTTATTTTTTAACTAGTACAAAGGAAA  500

seq1  AATACAACCATTTTGGGAAAAATAATTCTTTAGTTGTTCCACCTCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACCATTTTGGGAAAAATAATTCTTTAGTTGTTCCACCTCAAAGG  550

seq1  TATCATTGTCTTCAGCTGTCATTTCATTATTACCATAGCAACCTGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGTCTTCAGCTGTCATTTCATTATTACCATAGCAACCTGCAGTT  600

seq1  TGGCTTGTGCTATAAGAATACACTTAAGCCTAGAAGGATACTGACAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGCTATAAGAATACACTTAAGCCTAGAAGGATACTGACAGCCT  650

seq1  AGTCAATATTTTTATTTCTTTATTAAATTGCTAAGAAGTTAGCCAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATTTTTATTTCTTTATTAAATTGCTAAGAAGTTAGCCAGGGAG  700

seq1  TGGTGGCGCACACCTTTAATCCCAACACTTGTGAGGCAGAAGCAGGCAAA  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTGGCGCACACCTTTAATCCCAACACTTGTGAGGCAGAAGCATGCAAA  750

seq1  TTTCTGAATTTGAGGCCAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATTTGAGGCCAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCC  800

seq1  AGGGCTACACAGACAAACCCTGTCACGAAACACCACCCCCCTGCAAAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGGCTACACAGACAAACCCTGTCACGAAACACCACCCCCCTGC-AAAAA  849

seq1  CAAACAAACAAACCAAAAACCAAACCAAACCAAAAAAAATTACTAATAAG  900
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CAAACAAACAAACCAAAAACCAAACCAAACC-AAAAAAATTACT-ATAAG  897

seq1  ACAGAATTATGAAAAGAAAGCTGTCTGAGTTTGTATTTTAAGTGAAATGG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTATG-AAAGAAAGCTGTCTGAGTTTGTATTTTAAGTGAAATGG  946

seq1  AAGATAGATCAAGGGAATATAAATGATATTTTAAAAAGTTCTAGCAAAAT  1000
       ||||||||||| ||||||| ||||||||||  ||||| |||||| ||||
seq2  -AGATAGATCAA-GGAATAT-AATGATATTT--AAAAG-TCTAGC-AAAT  989

seq1  ATTAAATATATCTTTCAGAGTGAAATGTGTGAAACTGATACATTTTAAAC  1050
      | |||||||||  |||||||||||  ||| ||||||||||||  ||||||
seq2  A-TAAATATATTCTTCAGAGTGAATGGTGGGAAACTGATACA--TTAAAC  1036

seq1  ATTTTAGGGTCTTTTCCATCATGTTTACTAGAGCCGGGCAGATTAGTTTA  1100
      | ||||||||||||| ||||||||| ||||||||  |||||| |||  ||
seq2  A-TTTAGGGTCTTTT-CATCATGTTAACTAGAGC--GGCAGA-TAG--TA  1079

seq1  CTTATCAAATAAAAGCATCACTCATAAGGTACA  1133
      | |||||||| |||||||||||||||| |||||
seq2  C-TATCAAAT-AAAGCATCACTCATAA-GTACA  1109