BAC Information

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BAC

Clone NameB6Ng01-122K13
Chromosome14 (Build37)
Map Location 17,404,866 - 17,446,503
singlet/doubletdoublet
Overlap geneRarb
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122K13.bB6Ng01-122K13.g
ACCDH926028DH926029
length1,1301,088
definitionDH926028|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K13, 5' end.DH926029|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,445,357 - 17,446,503)(17,404,866 - 17,405,979)
sequence
gaattccaaggaagatactcagccacatagtgaagtctagatttaaagtg
agtagtcaagactagggttagaattcttagagtatttgttgtataagtag
catgtaatgttgtagtccaggtgagatttcagagacaaacaggcaggcag
gcaggcagacagacagagactattgatatgaccgtgactgaatacctgaa
gagggtctggaagtcaatgagggacattacacagttcagaacagacagac
ctctgggatctaggaagtcaggagagtatgcactgatacgattcagttca
aagcagacccctgcactactgagatgatcccattgagctagaaaacaaga
agtaaccccttattcaggaggctctgacaggaaaaagcaagtctggggca
cttcattttaaaagaggatgataaatgatacataatattttctttctcag
ataccctgaatactttctgctccgctgattattttcatctgtagaactca
atgtgcaggtcaggtgcccaacactctacaacacttagagagttcattac
ttcataacttgggatcttcattagggtaataatggaaagaaaactataaa
ctgtctttttctgtgtcagagaattgactgagaacctctcctggtcccat
caaaccttgtgagccaatgactggtgggacaaacaccaacaacttctact
gctttcccgatagagaaagaagcttttgtcttgcattaatatccagttct
tggtgatgagcagttagcagggaggaaagaaagcacgttgaagcagcttc
agataagaagccagtgcaataccttatatgagaatatgtgtaatgagctg
ctgtatgatgaattgccaatagaaaacaaaggaaagaacatgtggtatcc
catgaaaattttatacttcaagtcaccaccagcaaaggtcatgaataaac
tgaaatcctacttattccccagagagtcataatgaggataagtagacaag
taaagcactgggggggtcacagctgaatacaaaagtcagagactgtcagg
acttatggtggtttgaatttgctgtcatggaagtgacacataaaggtgta
gtcttattgagaggtgtagtcttgttagag
gaattctaacacttgacaaagtgaggctctggggacaatatgttcaaagg
ttttcaacacacacagacacatggactcgcacaagtgcacacacacatac
acacacacacacacacacacacacacacacacacacacacaaaacctaca
taagcttccaaagttggagatagttttgtggaattcagtcccaggctttc
tttcctctctgccccactgtttcttctgtattaagagcaaagttgagctg
cgtcttttcaaaacagccattaggtaaaatggaaaactaagtccacagga
tttaagctgttacttatgcaaaggtagttcacagggctttcctttcaaaa
gccccaacactgtaagacacggatacttactagaatttcttttgaaagaa
tgttttagttatccttaatctctggaatcaacagaaagaactgggattcc
ttggtttgtggacaacagagccagtctgagccagtctgcggggtaccggc
aatattgacacttgactcggttcagctctaggttggagtatgagttgaaa
ccctagctgaagcggaccacaatgagccctgattgccttgcttacaaaaa
caagacactggaattcctgaaacccttttgtcaaatgcttttatttactt
tgtctaaagcaggtttctttgattagcgaaaccttggtgctatccacagt
ttttgcttatcagctcgccctaggctagtgagtgacagtcagctcggctc
tccccagataaagcaaatcccttgtttaacattatcaagagcaaacaaag
ctttccctccactcttgaaacctaataggtaagttaagcagggttattgc
aaaaggagaatttctataaagtaactcctctccacagaatctctttccag
acggtctcccttctactaaaaatgtttcagacaatcctctctaagagtca
aagttctcgtgcccagtcctagatctcaactagacgtggcatcagtttaa
tgctatggaagaggctgagcatgctagtgactgaaatattttcttatgct
aagtttttgcctctcaaaagaaatgaggtagcaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17445357_17446503
seq2: B6Ng01-122K13.b_50_1179 (reverse)

seq1  CTCTAACAAGACTACACCTCTTCCAATAAGACTACACCTTTTAATTGTGT  50
      |||||||||||||||||||||  ||||||||||||||||||    |||||
seq2  CTCTAACAAGACTACACCTCT--CAATAAGACTACACCTTT---ATGTGT  45

seq1  CACTTCCCATGGGCCAAGCAAATTCAAACCACCATAAGTCCCTTGACCAG  100
      ||||| |||||     |||||||||||||||||||||||||  ||| |||
seq2  CACTT-CCATG---ACAGCAAATTCAAACCACCATAAGTCC--TGA-CAG  88

seq1  TTCTCTGACTTTTGTATTCAGCTGTGACCCCCCCAGTGCTTTTACTTTGT  150
       |||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  -TCTCTGACTTTTGTATTCAGCTGTGACCCCCCCAGTGC-TTTAC-TTGT  135

seq1  CTACTTATCCTCCTTATGACTCTTCTGGGGGAATAAGTAGGATTTCAGTT  200
      |||||||||||| ||||||||| ||| |||||||||||||||||||||||
seq2  CTACTTATCCTCATTATGACTC-TCT-GGGGAATAAGTAGGATTTCAGTT  183

seq1  TATTCATGACCTTTGCTGGTGGTGACTTGAAGTATAAAATTTTCATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGACCTTTGCTGGTGGTGACTTGAAGTATAAAATTTTCATGGGA  233

seq1  TACCACATGTTCTTTCCTTTGTTTTCTATTGGCAATTCATCATACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATGTTCTTTCCTTTGTTTTCTATTGGCAATTCATCATACAGCAG  283

seq1  CTCATTACACATATTCTCATATAAGGTATTGCACTGGCTTCTTATCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACACATATTCTCATATAAGGTATTGCACTGGCTTCTTATCTGAA  333

seq1  GCTGCTTCAACGTGCTTTCTTTCCTCCCTGCTAACTGCTCATCACCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCAACGTGCTTTCTTTCCTCCCTGCTAACTGCTCATCACCAAGA  383

seq1  ACTGGATATTAATGCAAGACAAAAGCTTCTTTCTCTATCGGGAAAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATATTAATGCAAGACAAAAGCTTCTTTCTCTATCGGGAAAGCAGT  433

seq1  AGAAGTTGTTGGTGTTTGTCCCACCAGTCATTGGCTCACAAGGTTTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTTGGTGTTTGTCCCACCAGTCATTGGCTCACAAGGTTTGATG  483

seq1  GGACCAGGAGAGGTTCTCAGTCAATTCTCTGACACAGAAAAAGACAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGAGAGGTTCTCAGTCAATTCTCTGACACAGAAAAAGACAGTTT  533

seq1  ATAGTTTTCTTTCCATTATTACCCTAATGAAGATCCCAAGTTATGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTCTTTCCATTATTACCCTAATGAAGATCCCAAGTTATGAAGTA  583

seq1  ATGAACTCTCTAAGTGTTGTAGAGTGTTGGGCACCTGACCTGCACATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTCTAAGTGTTGTAGAGTGTTGGGCACCTGACCTGCACATTGA  633

seq1  GTTCTACAGATGAAAATAATCAGCGGAGCAGAAAGTATTCAGGGTATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAGATGAAAATAATCAGCGGAGCAGAAAGTATTCAGGGTATCTG  683

seq1  AGAAAGAAAATATTATGTATCATTTATCATCCTCTTTTAAAATGAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAATATTATGTATCATTTATCATCCTCTTTTAAAATGAAGTGC  733

seq1  CCCAGACTTGCTTTTTCCTGTCAGAGCCTCCTGAATAAGGGGTTACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTTGCTTTTTCCTGTCAGAGCCTCCTGAATAAGGGGTTACTTCT  783

seq1  TGTTTTCTAGCTCAATGGGATCATCTCAGTAGTGCAGGGGTCTGCTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTAGCTCAATGGGATCATCTCAGTAGTGCAGGGGTCTGCTTTGA  833

seq1  ACTGAATCGTATCAGTGCATACTCTCCTGACTTCCTAGATCCCAGAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCGTATCAGTGCATACTCTCCTGACTTCCTAGATCCCAGAGGTC  883

seq1  TGTCTGTTCTGAACTGTGTAATGTCCCTCATTGACTTCCAGACCCTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTCTGAACTGTGTAATGTCCCTCATTGACTTCCAGACCCTCTTC  933

seq1  AGGTATTCAGTCACGGTCATATCAATAGTCTCTGTCTGTCTGCCTGCCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCAGTCACGGTCATATCAATAGTCTCTGTCTGTCTGCCTGCCTG  983

seq1  CCTGCCTGTTTGTCTCTGAAATCTCACCTGGACTACAACATTACATGCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTTTGTCTCTGAAATCTCACCTGGACTACAACATTACATGCTA  1033

seq1  CTTATACAACAAATACTCTAAGAATTCTAACCCTAGTCTTGACTACTCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACAACAAATACTCTAAGAATTCTAACCCTAGTCTTGACTACTCAC  1083

seq1  TTTAAATCTAGACTTCACTATGTGGCTGAGTATCTTCCTTGGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTAGACTTCACTATGTGGCTGAGTATCTTCCTTGGAATTC  1130

seq1: chr14_17404866_17405979
seq2: B6Ng01-122K13.g_65_1152

seq1  GAATTCTAACACTTGACAAAGTGAGGCTCTGGGGACAATATGTTCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACTTGACAAAGTGAGGCTCTGGGGACAATATGTTCAAAGG  50

seq1  TTTTCAACACACACAGACACATGGACTCGCACAAGTGCACACACACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACACACACAGACACATGGACTCGCACAAGTGCACACACACATAC  100

seq1  ACACACACACACACACACACACACACACACACACACACACAAAACCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACAAAACCTACA  150

seq1  TAAGCTTCCAAAGTTGGAGATAGTTTTGTGGAATTCAGTCCCAGGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCCAAAGTTGGAGATAGTTTTGTGGAATTCAGTCCCAGGCTTTC  200

seq1  TTTCCTCTCTGCCCCACTGTTTCTTCTGTATTAAGAGCAAAGTTGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCTGCCCCACTGTTTCTTCTGTATTAAGAGCAAAGTTGAGCTG  250

seq1  CGTCTTTTCAAAACAGCCATTAGGTAAAATGGAAAACTAAGTCCACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTTCAAAACAGCCATTAGGTAAAATGGAAAACTAAGTCCACAGGA  300

seq1  TTTAAGCTGTTACTTATGCAAAGGTAGTTCACAGGGCTTTCCTTTCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTGTTACTTATGCAAAGGTAGTTCACAGGGCTTTCCTTTCAAAA  350

seq1  GCCCCAACACTGTAAGACACGGATACTTACTAGAATTTCTTTTGAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAACACTGTAAGACACGGATACTTACTAGAATTTCTTTTGAAAGAA  400

seq1  TGTTTTAGTTATCCTTAATCTCTGGAATCAACAGAAAGAACTGGGATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTTATCCTTAATCTCTGGAATCAACAGAAAGAACTGGGATTCC  450

seq1  TTGGTTTGTGGACAACAGAGCCAGTCTGAGCCAGTCTGCGGGGTACCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTGGACAACAGAGCCAGTCTGAGCCAGTCTGCGGGGTACCGGC  500

seq1  AATATTGACACTTGACTCGGTTCAGCTCTAGGTTGGAGTATGAGTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGACACTTGACTCGGTTCAGCTCTAGGTTGGAGTATGAGTTGAAA  550

seq1  CCCTAGCTGAAGCGGACCACAATGAGCCCTGATTGCCTTGCTTACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTGAAGCGGACCACAATGAGCCCTGATTGCCTTGCTTACAAAAA  600

seq1  CAAGACACTGGAATTCCTGAAACCCTTTTGTCAAATGCTTTTATTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACTGGAATTCCTGAAACCCTTTTGTCAAATGCTTTTATTTACTT  650

seq1  TGTCTAAAGCAGGTTTCTTTGATTAGCGAAACCTTGGTGCTATCCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGCAGGTTTCTTTGATTAGCGAAACCTTGGTGCTATCCACAGT  700

seq1  TTTTGCTTATCAGCTCGCCCTAGGCTAGTGAGTGACAGTCAGCTCGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTATCAGCTCGCCCTAGGCTAGTGAGTGACAGTCAGCTCGGCTC  750

seq1  TCCCCAGATAAAGCAAATCCCTTGTTTAACATTATCAAGAGCAAACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGATAAAGCAAATCCCTTGTTTAACATTATCAAGAGCAAACAAAG  800

seq1  CTTTTCCCTCCACTCTTGAAACCTAATAGGTAAGTTAAGCAGGGTAATTG  850
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  C-TTTCCCTCCACTCTTGAAACCTAATAGGTAAGTTAAGCAGGGTTATTG  849

seq1  CAAAAGGGAGAATTTCTAT-AAGTAACTCCTCTCCACAGAATCTCTTTCC  899
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAAA-GGAGAATTTCTATAAAGTAACTCCTCTCCACAGAATCTCTTTCC  898

seq1  AAGACAGGTCTTCCCTTCTACTAAAAATGTTTCAGGACAATCCTCTCTAA  949
       |||| |||| ||||||||||||||||||||||| |||||||||||||||
seq2  -AGAC-GGTC-TCCCTTCTACTAAAAATGTTTCA-GACAATCCTCTCTAA  944

seq1  GAAGTCAAAGTTTCCTCGTGCCCAGTCCCTAGAATCTCAACTAGAACGTT  999
      | ||||||||||  |||||||||||| ||||| ||||||||||| ||| |
seq2  G-AGTCAAAGTT--CTCGTGCCCAGT-CCTAG-ATCTCAACTAG-ACG-T  987

seq1  GGCATCAGTTTAATTGCTATGGAAAGGAGGGCTTGAGGGCATGCTAGTGA  1049
      ||||||||||||| ||||||||||  || ||||   | ||||||||||||
seq2  GGCATCAGTTTAA-TGCTATGGAA--GA-GGCT---GAGCATGCTAGTGA  1030

seq1  CTGGAAAATATTTTCTAATGCTAAAGTTTTTTGCCTTCTCCAAAAAGAAA  1099
      |||  ||||||||||| |||||||   |||||||| ||||  ||||| ||
seq2  CTG--AAATATTTTCTTATGCTAA--GTTTTTGCC-TCTC--AAAAG-AA  1072

seq1  ATGA-GTAGCAAAGAG  1114
      |||| |||||||||||
seq2  ATGAGGTAGCAAAGAG  1088