BAC Information

Click to search

BAC

Clone NameB6Ng01-122L03
Chromosome14 (Build37)
Map Location 27,878,331 - 28,042,161
singlet/doubletdoublet
Overlap geneIl17rd, LOC665333
Upstream geneLOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1
Downstream geneArhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L03.bB6Ng01-122L03.g
ACCDH926054DH926055
length1,1791,000
definitionDH926054|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L03, 5' end.DH926055|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,040,976 - 28,042,161)(27,878,331 - 27,879,351)
sequence
gaattctgaagcctgaagaagccaggagcaatcttcaggccctccccagg
ggaaataaatgccttcaaggactgtgccagggctgagaactgctagggtg
aaaagaggagtcaagacaagagagtgagggacagtgacagcccagctcat
tgagggaaccagttagtcagaggacctgcagaagggaacaagaaaagact
ggggtacagagaattgggatcaaggtagagattccacctctccctggagg
aaacaaaccagctggggtggtccagaatggctgtacaatcaggtagaaac
taactttgtcaaggacaaggacaaggtcatggctgtacaatactggtcta
atgctggtagggttggtagtcatctcctctatatctttaattctacaggc
ataagtgtgtcatctaaaaactgtattcatgatttaaaaaagaaaagaag
tcccttttcagtctcctggctccctttccctgcagaaggagccaggcaag
gtcctcccgccagcagcacagctgtccctctggggatggggagctacaca
gagctctgaagtgggtgatttatggagaagaccaggagtcacgtgcttct
tgatgacagtcacacctgccaaaactcccaaagacccacctcaggctcat
gtcatctttaagagcaaaagctgcttgctgctttcctaacagtgtagttt
ggacacaaaagatctcccgtgctgaacagacatctgggggctgtgggaag
ggagcccaccatgaccctctgtgatgttgtatttcaagaattccttccct
ggggaggtgtaacactgtctatctctccttacaaagtgccaatagcaaag
caaagtaggattccaccagagttcaactggggagacaaggaggtactagg
gtcttaaagcaaggataaggagttccctctatttacatgggtgacctgaa
agcagctgcactgcaagtctttattcagcacaggtgacagcttcccataa
cacaagatcatgtcccttcagtaactaccttctatatatgccatacacat
gagactttcgaccgcatcacctactgaaggtaggttaggcagaactggta
ggcagaactcgcatacatggctagcaagggagcaaattggatacttcagg
ggtcactggacctctcccaccaactcttt
gaattcactttgtagaccaggctggccttgaacttagagatctgcctgcc
tctgcctccagagtgctgggattaaaggcgcgcgccaccaccgccccgct
aggattgaaaattttttttaaaaggaataagctacaattgtagtttcttt
tgccactgagctgacttagacatgacttggcacttgtgattgaaaatcca
tagagcccccctccccaggagcttatcccaggaaacaacataaatagttg
ttgcctttgatgatgttactttgtacgcttagcagttcctggcaccttgg
acaaaaagtcttcaattactgggttgaaacaaacgctgcttataaaagtc
ttaacagctgcctaatcaagagtcctccttaaaactgactttatacctct
aatgacctgaactacgtttcattttgttgttgttaactaagtgaagtcac
agttgcatttattacacatggttggtgttaagctgttaggagagactgga
gccgggcagaggcaggtggatctctgaggtcgaggacattctggtctaca
gagtgagttcctggattacacagagaaaccttgtctcaaaaaaaaaaaaa
aaaaaaaaaaaaaaggaaggaggaggcctggaatctccagccatcatatg
cgagtctgggtgcactccagcttttatgaaattttcagacatccatctcc
ttcatgcaaaaagctgaaattctgttagaggattttagtgatggaaagat
agcgggattccagggtttagcgagtcatgctctcttacctgctgagccat
ctctccagcccagcaagtcatgctcttttgagatcaaggcagtagttttc
ttaaagcccggagctatacacaaacgttctgtaaggccttgcatctcgag
acgttgcatttcagtctcagcacatgtgatgctggtcctgtgctgctatt
acccggtctggtgctgagcatgcgtcactttgctcgcctgtactgtgaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28040976_28042161
seq2: B6Ng01-122L03.b_49_1227 (reverse)

seq1  AAAGAGCTGGTGGGGAGGGTCCAGTGA-CCCTGA--GATTCCATTTGCTC  47
      |||||| |||||||   |||||||||| ||||||   || | ||||||||
seq2  AAAGAGTTGGTGGGAGAGGTCCAGTGACCCCTGAAGTATCCAATTTGCTC  50

seq1  C--TTCTAGCCATTTGTATGC-AGTTCTGCCCTAACCAGTTCTGCCTAAC  94
      |  | |||||||  ||||||| |||||||||   ||||||||||||||||
seq2  CCTTGCTAGCCA--TGTATGCGAGTTCTGCC--TACCAGTTCTGCCTAAC  96

seq1  CTACCTTCAGTAGGTTGATGCGGTCGGAAGTCTTCTATGTGGTATTGGCA  144
      |||||||||||||| ||||||||||| ||||||   |||| ||| |||||
seq2  CTACCTTCAGTAGG-TGATGCGGTCGAAAGTCT--CATGT-GTA-TGGCA  141

seq1  TATATAGGAGGTAGTTAACTGAAGGGACATTGATCTTGTGGTTATGGGAA  194
      ||||||| |||||||| |||||||||||| ||||||||| ||||||||||
seq2  TATATAGAAGGTAGTT-ACTGAAGGGACA-TGATCTTGT-GTTATGGGAA  188

seq1  GCTGTCACCTGTGCTGAATAAAGACTTTGCAGTGCAGCTGCTTTCAGGTC  244
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTGTCACCTGTGCTGAATAAAGAC-TTGCAGTGCAGCTGCTTTCAGGTC  237

seq1  ACCCATGTAATTAGAGGGAACTCCTTATCCTTGCTTTAAGACCCTAGTAC  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTAAATAGAGGGAACTCCTTATCCTTGCTTTAAGACCCTAGTAC  287

seq1  CTCCTTGTCTCCCCAGTTGAACTCTGGTGGAATCCTACTTTGCTTTGCTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTCTCCCCAGTTGAACTCTGGTGGAATCCTACTTTGCTTTGCTA  337

seq1  TTGGCACTTTGTAAGGAGAGATAGACAGTGTTACACCTCCCCAGGGAAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTTTGTAAGGAGAGATAGACAGTGTTACACCTCCCCAGGGAAGG  387

seq1  AATTCTTGAAATACAACATCACAGAGGGTCATGGTGGGCTCCCTTCCCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAAATACAACATCACAGAGGGTCATGGTGGGCTCCCTTCCCAC  437

seq1  AGCCCCCAGATGTCTGTTCAGCACGGGAGATCTTTTGTGTCCAAACTACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAGATGTCTGTTCAGCACGGGAGATCTTTTGTGTCCAAACTACA  487

seq1  CTGTTAGGAAAGCAGCAAGCAGCTTTTGCTCTTAAAGATGACATGAGCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGAAAGCAGCAAGCAGCTTTTGCTCTTAAAGATGACATGAGCCT  537

seq1  GAGGTGGGTCTTTGGGAGTTTTGGCAGGTGTGACTGTCATCAAGAAGCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGTCTTTGGGAGTTTTGGCAGGTGTGACTGTCATCAAGAAGCAC  587

seq1  GTGACTCCTGGTCTTCTCCATAAATCACCCACTTCAGAGCTCTGTGTAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCTGGTCTTCTCCATAAATCACCCACTTCAGAGCTCTGTGTAGC  637

seq1  TCCCCATCCCCAGAGGGACAGCTGTGCTGCTGGCGGGAGGACCTTGCCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCCCAGAGGGACAGCTGTGCTGCTGGCGGGAGGACCTTGCCTG  687

seq1  GCTCCTTCTGCAGGGAAAGGGAGCCAGGAGACTGAAAAGGGACTTCTTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCTGCAGGGAAAGGGAGCCAGGAGACTGAAAAGGGACTTCTTTT  737

seq1  CTTTTTTAAATCATGAATACAGTTTTTAGATGACACACTTATGCCTGTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAAATCATGAATACAGTTTTTAGATGACACACTTATGCCTGTAG  787

seq1  AATTAAAGATATAGAGGAGATGACTACCAACCCTACCAGCATTAGACCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGATATAGAGGAGATGACTACCAACCCTACCAGCATTAGACCAG  837

seq1  TATTGTACAGCCATGACCTTGTCCTTGTCCTTGACAAAGTTAGTTTCTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACAGCCATGACCTTGTCCTTGTCCTTGACAAAGTTAGTTTCTAC  887

seq1  CTGATTGTACAGCCATTCTGGACCACCCCAGCTGGTTTGTTTCCTCCAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTACAGCCATTCTGGACCACCCCAGCTGGTTTGTTTCCTCCAGG  937

seq1  GAGAGGTGGAATCTCTACCTTGATCCCAATTCTCTGTACCCCAGTCTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGAATCTCTACCTTGATCCCAATTCTCTGTACCCCAGTCTTTT  987

seq1  CTTGTTCCCTTCTGCAGGTCCTCTGACTAACTGGTTCCCTCAATGAGCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCCTTCTGCAGGTCCTCTGACTAACTGGTTCCCTCAATGAGCTG  1037

seq1  GGCTGTCACTGTCCCTCACTCTCTTGTCTTGACTCCTCTTTTCACCCTAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCACTGTCCCTCACTCTCTTGTCTTGACTCCTCTTTTCACCCTAG  1087

seq1  CAGTTCTCAGCCCTGGCACAGTCCTTGAAGGCATTTATTTCCCCTGGGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAGCCCTGGCACAGTCCTTGAAGGCATTTATTTCCCCTGGGGA  1137

seq1  GGGCCTGAAGATTGCTCCTGGCTTCTTCAGGCTTCAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGAAGATTGCTCCTGGCTTCTTCAGGCTTCAGAATTC  1179

seq1: chr14_27878331_27879351
seq2: B6Ng01-122L03.g_66_1065

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTTAGAGATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTTAGAGATCTGCCTGCC  50

seq1  TCTGCCTCCAGAGTGCTGGGATTAAAGGCGCGCGCCACCACCGCCCCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCAGAGTGCTGGGATTAAAGGCGCGCGCCACCACCGCCCCGCT  100

seq1  AGGATTGAAAATTTTTTTTAAAAGGAATAAGCTACAATTGTAGTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAAAATTTTTTTTAAAAGGAATAAGCTACAATTGTAGTTTCTTT  150

seq1  TGCCACTGAGCTGACTTAGACATGACTTGGCACTTGTGATTGAAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGAGCTGACTTAGACATGACTTGGCACTTGTGATTGAAAATCCA  200

seq1  TAGAGCCCCCCTCCCCAGGAGCTTATCCCAGGAAACAACATAAATAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCCCCTCCCCAGGAGCTTATCCCAGGAAACAACATAAATAGTTG  250

seq1  TTGCCTTTGATGATGTTACTTTGTACGCTTAGCAGTTCCTGGCACCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGATGATGTTACTTTGTACGCTTAGCAGTTCCTGGCACCTTGG  300

seq1  ACAAAAAGTCTTCAATTACTGGGTTGAAACAAACGCTGCTTATAAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTCTTCAATTACTGGGTTGAAACAAACGCTGCTTATAAAAGTC  350

seq1  TTAACAGCTGCCTAATCAAGAGTCCTCCTTAAAACTGACTTTATACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTGCCTAATCAAGAGTCCTCCTTAAAACTGACTTTATACCTCT  400

seq1  AATGACCTGAACTACGTTTCATTTTGTTGTTGTTAACTAAGTGAAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGAACTACGTTTCATTTTGTTGTTGTTAACTAAGTGAAGTCAC  450

seq1  AGTTGCATTTATTACACATGGTTGGTGTTAAGCTGTTAGGAGAGACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATTTATTACACATGGTTGGTGTTAAGCTGTTAGGAGAGACTGGA  500

seq1  GCCGGGCAGAGGCAGGTGGATCTCTGAGGTCGAGGACATTCTGGTCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCAGAGGCAGGTGGATCTCTGAGGTCGAGGACATTCTGGTCTACA  550

seq1  GAGTGAGTTCCTGGATTACACAGAGAAACCTTGTCTCAAAAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGTGAGTTCCTGGATTACACAGAGAAACCTTGTCTC-AAAAAAAAAAAA  599

seq1  AAAAAAAAAAAAAAAGGAAGGAGGAGGCCTGGAATCTCCAGCCATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGGAAGGAGGAGGCCTGGAATCTCCAGCCATCATAT  649

seq1  GCGAGTCTGGGTGCACTCCAGCTTTTATGAAATTTTCAGACATCCATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTCTGGGTGCACTCCAGCTTTTATGAAATTTTCAGACATCCATCTC  699

seq1  CTTCATGCAAAAAGCTGAAATTCTGTTAGAGGATTTTAGTGATGGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCAAAAAGCTGAAATTCTGTTAGAGGATTTTAGTGATGGAAAGA  749

seq1  TAGCGGGATTCCAGGGTTTAGCGAGTCATGCTCTCTTACCTGCTGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGGATTCCAGGGTTTAGCGAGTCATGCTCTCTTACCTGCTGAGCCA  799

seq1  TCTCTCCAGCCCAGCAAGTCATGCTCTTTTGAGATCAAGGCAGTAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCAGCAAGTCATGCTCTTTTGAGATCAAGGCAGTAGTTTT  849

seq1  CTTAAAGCCCGGAGCTATTACACAAACGTTCTGTAAGGCCTTGCATCTCG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCCGGAGCTA-TACACAAACGTTCTGTAAGGCCTTGCATCTCG  898

seq1  AGACGTTGCATTTCAGTCTCCAGCACATGTGAATGGCTGGTCCTTGTGCT  950
      ||||||||||||||||||| ||||||||||||   |||||||| ||||||
seq2  AGACGTTGCATTTCAGTCT-CAGCACATGTGA--TGCTGGTCC-TGTGCT  944

seq1  GCTATTTAACCCGGTTCTGGGTTGGCTGAGCATGGCCGGTCACCTTTGCT  1000
      ||||||  |||||| |||||    ||||||||||    |||| |||||||
seq2  GCTATT--ACCCGG-TCTGG---TGCTGAGCATG---CGTCA-CTTTGCT  984

seq1  CGGCCCTTGTAACCTGTGAGA  1021
      ||   | ||||  ||||||||
seq2  CG---CCTGTA--CTGTGAGA  1000