BAC Information

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BAC

Clone NameB6Ng01-122M15
Chromosome14 (Build37)14 (Build37)
Map Location 55,888,267 - 55,888,331119,585,137 - 119,586,293
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAbhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720
Downstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122M15.bB6Ng01-122M15.g
ACCDH926124DH926125
length7511,158
definitionDH926124|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M15, 5' end.DH926125|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,888,267 - 55,888,331)(119,585,137 - 119,586,293)
sequence
gaattctctgaaatagaggtgtgggagatccaccagaatgctgaggagat
ggacgtaacccagcaggcagctcaactcaggaaagaataaaaggaggttc
accccaggaactctcaggagaagaccaaaccagccacatggctaaactca
ggttagaataaaagggacaataagttaagagcaagccagagaacaagccg
agctgaagctgatggcctggcatttattagtaagtaatcagtcttagagt
cattactgtcagaaactaggtggctgggaggaaaacatgggtttcctata
ctttgcagaggatgaggaacaggttttcagcacctaccccggctgctgtg
cttctcaccacgatgcagttctatccctttggaactataatccaaaataa
ccttccttccataaccttcttttggttatggtgttttatcacagcaacag
aaaaataatgaatacactgaactactcaggcgatgacatgccacagcccc
ttctccccatcttctggctttagtattctttctgacttctcttctgctat
gttacctgagccttggaggagatagcataaatgtcttactaatcttttct
ttccctcttcctcctcttccccttcctgctcctcctcctcctcctccttc
ttctttttctcctcctcctcctcttcttgatgcttcctcctcctcatctt
ctcctcctccttcctcctcctcctctttatcctcctcctcttcttcttct
c
gaattccttaaacaaacagcggttccgacacctctgtagaacgtgtcatg
gtgttgagcaacttgctggccccattattctcaggctggatggatgaggg
gatactgagcttcctgttaataattggacaaaatgagatgcaagcaaaaa
agagtgtctaatactaatatcagttccagaggagtcactatggctgttgg
gtaagaaccttgttaaagacagcactaaggggatcagggaggctggtttt
ttaaagggtcaacttcgtagtgaagagaaagagacatgctggaaccttca
accaacaacagtccaaaacacccgatctgtggttgctgagaaaaattgtc
cgcgttattttcatcctcagaaaaaaatgcttgcatatctggaattgttt
aagctaaaataaattaagaagtagagtataacaagaaatggatgaataac
ataaaagagtgagcggttaccagaaaagtgccagaaaaggaagaaaatta
aaatctgtaaaaatataaagggggtgtgatattgttaaaaatggagtctg
aagttataccgagaaaagttgcaaaaaatatagttaatattgaaaagtaa
aggaatgtttaaaatgatggaactctgacaccaaaaaaggagtagataga
aataaaagggggggggggagaaatctatgattaaaatactaacagattta
aaaatacagaaaccacacagaatcattcctggaatgtgcttgtgtgtaac
tcctgggtatagcagaaaggagtgagcttacttcagaatattcattaaaa
ctgcctacggtttttggtttcatggaaaaaatatgttttggaacaatgtg
ggcttgtcctggaacacttttactcatgtcatttctagttggccttcctt
tctcctctcaattctcccagggcccaccactaatagagtggtgaaacaaa
ccattaggatgtattccagaataatttaaacagagagttcagctttcaaa
tttagtgtaattaagaactaaggacatcgaacgaacagcatggagactca
gtgttctgcttgaagaaggacacttaacagataggacaaacagaaaccca
gactcgatttatggatttttaacgagatccaaatatatttaaaggctagg
tcctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55888267_55888331
seq2: B6Ng01-122M15.b_705_799 (reverse)

seq1  GAGAAGAAGAAG--------------GAGGAGGAGGAGG-AGGAGGAGGA  35
      ||||||||||||              ||||||||||||| ||||||||||
seq2  GAGAAGAAGAAGAGGAGGAGGATAAAGAGGAGGAGGAGGAAGGAGGAGGA  50

seq1  G-----GAGGAGGAG----------GAGGAGGAGGAGGAGGAGAA  65
      |     |||||||||          || |||||||||||||||||
seq2  GAAGATGAGGAGGAGGAAGCATCAAGAAGAGGAGGAGGAGGAGAA  95

seq1: chr14_119585137_119586293
seq2: B6Ng01-122M15.g_69_1226 (reverse)

seq1  GGAGAG--ACTAGCCTTTATATAT-TTTTGACTTCGTT-AAAATTCATAA  46
      ||||||   |||||||||| |||| ||| ||  ||||| ||||| |||||
seq2  GGAGAGGACCTAGCCTTTAAATATATTTGGATCTCGTTAAAAATCCATAA  50

seq1  ATCGATGTCTGGGTTCTCTGTTTTGTCCTATCTGTTAATGTGTCTGTCTT  96
      ||||| ||||||||| |||| ||||||||||||||||| |||||  ||||
seq2  ATCGA-GTCTGGGTT-TCTG-TTTGTCCTATCTGTTAA-GTGTCCTTCTT  96

seq1  CATGCAAGAACCTTGATGTTCTCATTGCTGTTTCGTTTTCGATGTCCTTT  146
      || || |||||  |||   ||||  ||||| ||||  ||||||||||  |
seq2  CAAGC-AGAACACTGA--GTCTCCATGCTG-TTCG--TTCGATGTCC--T  138

seq1  TAGTTCTTTATTACACT-AATTTTAAAGCTGAACTCT-TGTTTACATTTA  194
      |||||||| |||||||| ||||| ||||||||||||| |||||| |||  
seq2  TAGTTCTTAATTACACTAAATTTGAAAGCTGAACTCTCTGTTTAAATTAT  188

seq1  TCTGGAATACATCCT-ATGGTTTGTTTCACCACTCTATTGGTGGTGGG-C  242
      ||||||||||||||| ||||||||||||||||||||||| |||||||| |
seq2  TCTGGAATACATCCTAATGGTTTGTTTCACCACTCTATTAGTGGTGGGCC  238

seq1  CTGGGAGAATGGAGAGGAGAAAGG-AGGCCAACTAG-AATGACATGAGT-  289
      |||||||||| ||||||||||||| ||||||||||| |||||||||||| 
seq2  CTGGGAGAATTGAGAGGAGAAAGGAAGGCCAACTAGAAATGACATGAGTA  288

seq1  AAAGTG-TCCAGGACAAG-CCACA-TGTTCCAAAACATATTTTTTTCCAT  336
      |||||| ||||||||||| ||||| |||||||||||||| ||||||||||
seq2  AAAGTGTTCCAGGACAAGCCCACATTGTTCCAAAACATA-TTTTTTCCAT  337

seq1  GGAAACAAATAACCGTAGGCAGTTTTAATGAATATTCTGAAGTAAGCTCA  386
       ||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  -GAAACCAAAAACCGTAGGCAGTTTTAATGAATATTCTGAAGTAAGCTCA  386

seq1  CTCCTTTCTGCTATACCCAGGAGTTACACACAAGCACATTCCAGGAATGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTGCTATACCCAGGAGTTACACACAAGCACATTCCAGGAATGA  436

seq1  TTCTGTGTGGTTTCTGTATTTTTAAATCTGTTAGTATTTTAATCATAGAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGGTTTCTGTATTTTTAAATCTGTTAGTATTTTAATCATAGAT  486

seq1  TTCT-CCCCCCCCCCTTTTATTTCTATCTACTCCTTTTTTGGTGTCAGAG  535
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCCCCCCCTTTTATTTCTATCTACTCCTTTTTTGGTGTCAGAG  536

seq1  TTCCATCATTTTAAACATTCCTTTACTTTTCAATATTAACTATATTTTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCATTTTAAACATTCCTTTACTTTTCAATATTAACTATATTTTTT  586

seq1  GCAACTTTTCTCGGTATAACTTCAGACTCCATTTTTAACAATATCACACC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTTCTCGGTATAACTTCAGACTCCATTTTTAACAATATCACACC  636

seq1  CCCTTTATATTTTTACAGATTTTAATTTTCTTCCTTTTCTGGCACTTTTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATATTTTTACAGATTTTAATTTTCTTCCTTTTCTGGCACTTTTC  686

seq1  TGGTAACCGCTCACTCTTTTATGTTATTCATCCATTTCTTGTTATACTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCGCTCACTCTTTTATGTTATTCATCCATTTCTTGTTATACTCT  736

seq1  ACTTCTTAATTTATTTTAGCTTAAACAATTCCAGATATGCAAGCATTTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAATTTATTTTAGCTTAAACAATTCCAGATATGCAAGCATTTTT  786

seq1  TTCTGAGGATGAAAATAACGCGGACAATTTTTCTCAGCAACCACAGATCG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGATGAAAATAACGCGGACAATTTTTCTCAGCAACCACAGATCG  836

seq1  GGTGTTTTGGACTGTTGTTGGTTGAAGGTTCCAGCATGTCTCTTTCTCTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGGACTGTTGTTGGTTGAAGGTTCCAGCATGTCTCTTTCTCTT  886

seq1  CACTACGAAGTTGACCCTTTAAAAAACCAGCCTCCCTGATCCCCTTAGTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACGAAGTTGACCCTTTAAAAAACCAGCCTCCCTGATCCCCTTAGTG  936

seq1  CTGTCTTTAACAAGGTTCTTACCCAACAGCCATAGTGACTCCTCTGGAAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTAACAAGGTTCTTACCCAACAGCCATAGTGACTCCTCTGGAAC  986

seq1  TGATATTAGTATTAGACACTCTTTTTTGCTTGCATCTCATTTTGTCCAAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAGTATTAGACACTCTTTTTTGCTTGCATCTCATTTTGTCCAAT  1036

seq1  TATTAACAGGAAGCTCAGTATCCCCTCATCCATCCAGCCTGAGAATAATG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAGGAAGCTCAGTATCCCCTCATCCATCCAGCCTGAGAATAATG  1086

seq1  GGGCCAGCAAGTTGCTCAACACCATGACACGTTCTACAGAGGTGTCGGAA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCAAGTTGCTCAACACCATGACACGTTCTACAGAGGTGTCGGAA  1136

seq1  CCGCTGTTTGTTTAAGGAATTC  1157
      ||||||||||||||||||||||
seq2  CCGCTGTTTGTTTAAGGAATTC  1158