BAC Information

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BAC

Clone NameB6Ng01-123H02
Chromosome13 (Build37)14 (Build37)
Map Location 80,483,674 - 80,484,80786,219,875 - 86,219,929
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H02.bB6Ng01-123H02.g
ACCDH926606DH926607
length1,121491
definitionDH926606|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H02, 5' end.DH926607|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,483,674 - 80,484,807)(86,219,875 - 86,219,929)
sequence
gaattctctgattttttttttaaaaagctaagtctacgactcaaaatggc
accataattttaacataaattggatgtggaagaccattcaaaaatttagt
tagtataaagagaagataatataattccaacatccaggttaaaaatctaa
accttcttcagagactcctttctctatcacattgattcagtaatggttca
gaatacttgctaatagtgaaaactgctaaagcagatattttctgtggtat
ggtaaagcatgagcaatattagttttctatgtatatgtgcaagtacatgt
atacatgtacactctgtttacatgttatttgttgttcctgcactctttga
cttctgatagctattaaatatatatttttttcttttttatatacaggata
agtctaaattttattgtattaaattatttaaaatttattaaaatataatt
taaagtgtaaaaatgttattgatatttgcaaataatttgacatatttgaa
cagatctaattaccaaaatatggaaaatttgttttatctctaggttttat
cttacatatactattttcttaaggacagagggaacagaaaggtaagttgt
tcacaacttttaaatcagcagttttttctcaaaaataaaatttataaaac
ttcatagaagaaagtaccactaactaaaggggaaaaaggtggttataaaa
atcataatctcccaagatgtgagatgataaccactcaaagatattgatgt
acagctcctatgtgcttgtctttaaaacaggtttttcactatagtgcttg
ggaagtgtgaacaggtagttttctatgtgttcaaagacagccttgtctac
ataaaagagtgccataccagccctaggcacatagtaaaaccctgtttcaa
actaaactaaactaaactaaacttaactaaattaactaaactaaactaga
taaacatttaactaaatcaaatgtttaaactaaataaattacataagcat
cttactgtatacttgttaattctggtgcttatgtggctatatgagattat
ggagttgtgacttgaaacatttattataacacaatcttatgtatgctatt
atatataccatatataacaca
tcaggagaagaaactcaaatggctgagaaaaatgtaaatgctcaacatcc
ttagccatcagggaaatgcaaatcaaaactacttttagatttcctcttat
acatgttagaatgtctataacacaagccttggtggcaaaggtatggagca
aggagattacttctccagttccagtaggagtactacctagtacagtcact
atagaaatcagtaggatgactcttcataaatttgggatttgatctacctc
aacattcagttatactactgttgggcatagattcaaatgacatttcatct
gacaaaaagaacattttctcaacctgttgaagcttgttttatgtccagtt
atatgttcaactttggagaaggttctatgaggtgttgaggaggttctttt
ggtttagggtgaatagttatgtaggtatatgttaaatccattttttttta
taataacttcttatttcactgtgtctctgtttagtttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80483674_80484807
seq2: B6Ng01-123H02.b_42_1162 (reverse)

seq1  TGTGTTATATATGGTATATATAATAGCATACATAAGATTGTGTATAAATT  50
      |||||||||||||||||||||||||||||||||||||||||||   ||| 
seq2  TGTGTTATATATGGTATATATAATAGCATACATAAGATTGTGTTATAAT-  49

seq1  AAAATGTTTCAAAGTCAACAAACTCATAAATCTCATATAAGCACATAAGC  100
       ||||||||| ||||||   |||||   |||||||||||  |||||||||
seq2  -AAATGTTTC-AAGTCA--CAACTCCATAATCTCATATAGCCACATAAGC  95

seq1  ACAAGAATTAACAAAGTATAACAGTTAAGATGCTTATTGTAATTTATTTT  150
      || ||||||||| |||||| |||| ||||||||||| ||||||||| |||
seq2  ACCAGAATTAAC-AAGTAT-ACAG-TAAGATGCTTA-TGTAATTTA-TTT  140

seq1  AGTTTAAACATTTGATTTAGTTTAAATGTTTATCTTAGTTTAGTTTAGTT  200
      |||||||||||||||||||| ||||||||||||| ||||||||||||| |
seq2  AGTTTAAACATTTGATTTAG-TTAAATGTTTATC-TAGTTTAGTTTAG-T  187

seq1  TAATTTAGTTAAGTTTAGTTTAGTTTAGTTTAGTTTGAAACAGGGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGTTAAGTTTAGTTTAGTTTAGTTTAGTTTGAAACAGGGTTTTA  237

seq1  CTATGTGCCTAGGGCTGGTATGGCACTCTTTTATGTAGACAAGGCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCCTAGGGCTGGTATGGCACTCTTTTATGTAGACAAGGCTGTCT  287

seq1  TTGAACACATAGAAAACTACCTGTTCACACTTCCCAAGCACTATAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACATAGAAAACTACCTGTTCACACTTCCCAAGCACTATAGTGAA  337

seq1  AAACCTGTTTTAAAGACAAGCACATAGGAGCTGTACATCAATATCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTTTAAAGACAAGCACATAGGAGCTGTACATCAATATCTTTGA  387

seq1  GTGGTTATCATCTCACATCTTGGGAGATTATGATTTTTATAACCACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATCATCTCACATCTTGGGAGATTATGATTTTTATAACCACCTTT  437

seq1  TTCCCCTTTAGTTAGTGGTACTTTCTTCTATGAAGTTTTATAAATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTAGTTAGTGGTACTTTCTTCTATGAAGTTTTATAAATTTTAT  487

seq1  TTTTGAGAAAAAACTGCTGATTTAAAAGTTGTGAACAACTTACCTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAAAAACTGCTGATTTAAAAGTTGTGAACAACTTACCTTTCTG  537

seq1  TTCCCTCTGTCCTTAAGAAAATAGTATATGTAAGATAAAACCTAGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGTCCTTAAGAAAATAGTATATGTAAGATAAAACCTAGAGATA  587

seq1  AAACAAATTTTCCATATTTTGGTAATTAGATCTGTTCAAATATGTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTTTCCATATTTTGGTAATTAGATCTGTTCAAATATGTCAAAT  637

seq1  TATTTGCAAATATCAATAACATTTTTACACTTTAAATTATATTTTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAAATATCAATAACATTTTTACACTTTAAATTATATTTTAATAA  687

seq1  ATTTTAAATAATTTAATACAATAAAATTTAGACTTATCCTGTATATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATAATTTAATACAATAAAATTTAGACTTATCCTGTATATAAAA  737

seq1  AAGAAAAAAATATATATTTAATAGCTATCAGAAGTCAAAGAGTGCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAATATATATTTAATAGCTATCAGAAGTCAAAGAGTGCAGGAA  787

seq1  CAACAAATAACATGTAAACAGAGTGTACATGTATACATGTACTTGCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATAACATGTAAACAGAGTGTACATGTATACATGTACTTGCACAT  837

seq1  ATACATAGAAAACTAATATTGCTCATGCTTTACCATACCACAGAAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGAAAACTAATATTGCTCATGCTTTACCATACCACAGAAAATAT  887

seq1  CTGCTTTAGCAGTTTTCACTATTAGCAAGTATTCTGAACCATTACTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGCAGTTTTCACTATTAGCAAGTATTCTGAACCATTACTGAAT  937

seq1  CAATGTGATAGAGAAAGGAGTCTCTGAAGAAGGTTTAGATTTTTAACCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATAGAGAAAGGAGTCTCTGAAGAAGGTTTAGATTTTTAACCTG  987

seq1  GATGTTGGAATTATATTATCTTCTCTTTATACTAACTAAATTTTTGAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGAATTATATTATCTTCTCTTTATACTAACTAAATTTTTGAATG  1037

seq1  GTCTTCCACATCCAATTTATGTTAAAATTATGGTGCCATTTTGAGTCGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACATCCAATTTATGTTAAAATTATGGTGCCATTTTGAGTCGTA  1087

seq1  GACTTAGCTTTTTAAAAAAAAAATCAGAGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GACTTAGCTTTTTAAAAAAAAAATCAGAGAATTC  1121

seq1: chr14_86219875_86219929
seq2: B6Ng01-123H02.g_509_564 (reverse)

seq1  ACAGAAACTAAACAGAGACACAGTGAAACTAAAAGAAGTGAT----GAAA  46
      |||||||||||||||||||||||||||   | ||||||| ||     |||
seq2  ACAGAAACTAAACAGAGACACAGTGAA---ATAAGAAGTTATTATAAAAA  47

seq1  CAAATGGAT  55
       ||||||||
seq2  AAAATGGAT  56