BAC Information

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BAC

Clone NameB6Ng01-123L02
Chromosome14 (Build37)
Map Location 77,641,774 - 77,693,773
singlet/doubletdoublet
Overlap geneD230005D02Rik, LOC100043755
Upstream gene2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
Downstream geneLOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123L02.bB6Ng01-123L02.g
ACCDH926791DH926792
length1,1491,109
definitionDH926791|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L02, 5' end.DH926792|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,641,774 - 77,642,928)(77,692,616 - 77,693,773)
sequence
gaattctcattcctacttcttagagataataatacacattttgctaaata
tcctcctaagagtttttgccttggttttcttattcttcagagcatagaaa
catacttattttaaagtagaactatattattttaacccaaaatttgaaaa
aattgtaatgtgcatcactgattatgggtatatcatattactatgaaata
gcatgactaggcttactggtcgaagggctgctataatttattgctatgat
ttattggctccctgttgatttaagttgtttactaggctgaattaggatga
caattcttagtcgtggtaaactctttctgtgagatttttcagtccacttt
cttacctgtggggttagcagtgctcacctcaccttaccttctttaactcc
ccaggacttcccacctccccttatttccctgtgtaatgatcattgaaaat
gcgaatttattttattttgaagtttaaacactttgggtcaatttgggggc
ctttgtgtgcttcccttgtcatttggtttgtctttcacagcagcagcagg
ttttggaatttcgcaggagtctttacatattagtgggattagccctccat
cagttaactcaaaatgaattaggtactaggcaatgtgccaagtatgcatt
ctcttattgattactgtcttttcacttggacttagagcattccctccact
gaagagatacgtaatcaaatgtatcaatttagcattggactgaaaaatca
tccatgggaaaaatcttgttaccccaagattatagaaattgcccctgaaa
ttttatttcagttctgtgattatttaaccatttggaataaatttgaggga
gacataggcagttaggaccattaattcatttctatatttttatcctaaca
ctatcattttaatctacagtttctccacttttatcatatacaaagttccc
atgggtccttggatctaatcctgcttctctatttcattccatagcttgct
atcacatcagcttattgagagatacaaagatagataacagaatatttatt
agcattgctggtacaaagaaagattacaaacagaaatattagcattggcc
tcgtaagtagttacttggttactacctcaagtgtggagagtctggagag
gaattcaaagcagcccttgcttttccccagatagctctgtgcacgcctac
agtaataagttggagcagattcttgactttcccattagcatctaacaatt
gatgagcttttgatagccatgggatgatttttaaatgatgattttaattc
cccaatgcacctagataactagaaaaataatagacaataaatgagtgctt
tagaaaaggaatttaactaagaatttaaagcttcacccaagctgaaagta
atcaaaaaaatcttataatggtcctgaactgaattcaatattctttttac
attattaaaggaatacatcagcctcaaataacttatttcatgccggatgc
acaactactccatgatgtagtaatcattatctacaatttatagatgagaa
agctgatattcagatatttcagctgaatcgtttgctgcactaagaattgg
gagagctgctgttcaatataaacccagctgcacgtaaagccatgttcaca
gaaccaaaccagctcctgatggaatatgggtcctcaaacttttgtatgag
tttcagcccaaaaaataaactctgagcttaactgtcttatggattattca
attcatttgggaccagtttattacagtctcctcaccgtgtagtcagaaat
ggccttttctttttaatggtgactatttaaaaaggcagttcatttcaaga
cttaattgaagaatcaaatgtaaaggaatttgcacaccaaataataattt
ttctattaagggttttcttggaacattaccatggaaatcaaaggaaaggt
tacgttttcataaacaaaaatcttcacataacaccaatcagtatcctcca
ttgtcagagcacagaactcttgtttacatttgctctcatatgatgagaga
caataacgtgcccttcacacattccatggaaatacttgcattaaaatgac
atttatgccattcttgagttctgagtgctatagaactgtttgttaacagt
tgatgatctatccaatattagctgatctaatgagagtagattttcttctt
tctcagtcttagtttactgcttgacgaaccatgacaaggcactctttttt
tttcaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_77641774_77642928
seq2: B6Ng01-123L02.b_46_1194

seq1  GAATTCTCATTCCTACTTCTTAGAGATAATAATACACATTTTGCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCCTACTTCTTAGAGATAATAATACACATTTTGCTAAATA  50

seq1  TCCTCCTAAGAGTTTTTGCCTTGGTTTTCTTATTCTTCAGAGCATAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAAGAGTTTTTGCCTTGGTTTTCTTATTCTTCAGAGCATAGAAA  100

seq1  CATACTTATTTTAAAGTAGAACTATATTATTTTAACCCAAAATTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTATTTTAAAGTAGAACTATATTATTTTAACCCAAAATTTGAAAA  150

seq1  AATTGTAATGTGCATCACTGATTATGGGTATATCATATTACTATGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATGTGCATCACTGATTATGGGTATATCATATTACTATGAAATA  200

seq1  GCATGACTAGGCTTACTGGTCGAAGGGCTGCTATAATTTATTGCTATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTAGGCTTACTGGTCGAAGGGCTGCTATAATTTATTGCTATGAT  250

seq1  TTATTGGCTCCCTGTTGATTTAAGTTGTTTACTAGGCTGAATTAGGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCTCCCTGTTGATTTAAGTTGTTTACTAGGCTGAATTAGGATGA  300

seq1  CAATTCTTAGTCGTGGTAAACTCTTTCTGTGAGATTTTTCAGTCCACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTAGTCGTGGTAAACTCTTTCTGTGAGATTTTTCAGTCCACTTT  350

seq1  CTTACCTGTGGGGTTAGCAGTGCTCACCTCACCTTACCTTCTTTAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGTGGGGTTAGCAGTGCTCACCTCACCTTACCTTCTTTAACTCC  400

seq1  CCAGGACTTCCCACCTCCCCTTATTTCCCTGTGTAATGATCATTGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTTCCCACCTCCCCTTATTTCCCTGTGTAATGATCATTGAAAAT  450

seq1  GCGAATTTATTTTATTTTGAAGTTTAAACACTTTGGGTCAATTTGGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTTATTTTATTTTGAAGTTTAAACACTTTGGGTCAATTTGGGGGC  500

seq1  CTTTGTGTGCTTCCCTTGTCATTTGGTTTGTCTTTCACAGCAGCAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGCTTCCCTTGTCATTTGGTTTGTCTTTCACAGCAGCAGCAGG  550

seq1  TTTTGGAATTTCGCAGGAGTCTTTACATATTAGTGGGATTAGCCCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATTTCGCAGGAGTCTTTACATATTAGTGGGATTAGCCCTCCAT  600

seq1  CAGTTAACTCAAAATGAATTAGGTACTAGGCAATGTGCCAAGTATGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACTCAAAATGAATTAGGTACTAGGCAATGTGCCAAGTATGCATT  650

seq1  CTCTTATTGATTACTGTCTTTTCACTTGGACTTAGAGCATTCCCTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTGATTACTGTCTTTTCACTTGGACTTAGAGCATTCCCTCCACT  700

seq1  GAAGAGATACGTAATCAAATGTATCAATTTAGCATTGGACTGAAAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATACGTAATCAAATGTATCAATTTAGCATTGGACTGAAAAATCA  750

seq1  TCCATGGGAAAAATCTTGTTACCCCAAGATTATAGAAATTGCCCCTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGAAAAATCTTGTTACCCCAAGATTATAGAAATTGCCCCTGAAA  800

seq1  TTTTATTTCAGTTCTGTGATTATTTAACCATTTGGAATAAATTTGAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCAGTTCTGTGATTATTTAACCATTTGGAATAAATTTGAGGGA  850

seq1  GACATAGGCAGTAAGGACCATTAATTCATTTCTATATTTTTATCCTAACA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACATAGGCAGTTAGGACCATTAATTCATTTCTATATTTTTATCCTAACA  900

seq1  CTATCATTTTAATCTACAGTTTCTCCACTTTTATCATATACAAAGTTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTTTAATCTACAGTTTCTCCACTTTTATCATATACAAAGTTCCC  950

seq1  ATGGGTCCTTGGATCTAATCCTGCTTCCTCTATTTCATTCCATAGCTTGC  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGGTCCTTGGATCTAATCCTGCTT-CTCTATTTCATTCCATAGCTTGC  999

seq1  TATCACCATCAGCTTATTGAGAGATACAAAGATAGATAAACAGAAATATT  1050
      ||||| ||||||||||||||||||||||||||||||| |||||||   ||
seq2  TATCA-CATCAGCTTATTGAGAGATACAAAGATAGAT-AACAGAATATTT  1047

seq1  ATTAGCATTGGCTGGTACAAAGATAGATTACCAAACAGAAATATTAGCAT  1100
      ||||||||| ||||||||||||| |||||| |||||||||||||||||||
seq2  ATTAGCATT-GCTGGTACAAAGAAAGATTA-CAAACAGAAATATTAGCAT  1095

seq1  TGG-CTCGTAAGTAGTTACTTTGAGTAACTACTCAAAGTGTGGAGAGTCT  1149
      ||| |||||||||||||||||   || |||||   |||||||||||||||
seq2  TGGCCTCGTAAGTAGTTACTT--GGTTACTACCTCAAGTGTGGAGAGTCT  1143

seq1  TGAGAG  1155
       |||||
seq2  GGAGAG  1149

seq1: chr14_77692616_77693773
seq2: B6Ng01-123L02.g_67_1175 (reverse)

seq1  GTCTTGGAAAAAAAAAAAAAGAGTTGCCTTGGTCATGGTGTCTGTTCACA  50
      ||||||     |||||||||||| |||||| ||||||||   |  ||| |
seq2  GTCTTG-----AAAAAAAAAGAG-TGCCTT-GTCATGGT---TCGTCA-A  39

seq1  GCAGTAAAACACTAAGACACTGAGAAAGAAAGAAAAAAATCCTTCTCTTC  100
      |||||||   ||||||  |||||||||| |||||||     || ||| ||
seq2  GCAGTAA---ACTAAG--ACTGAGAAAG-AAGAAAA----TCTACTC-TC  78

seq1  ATTTAGAATTCAGCTTAATAATTTGGGATTAGGATCCAATCAAACTTGTT  150
      | |||||  |||||    |||| | ||||   ||||  |||||   ||||
seq2  A-TTAGA--TCAGC----TAATATTGGAT--AGATC--ATCAA--CTGTT  115

seq1  TAAACAAAAACCAGTTTCTATAGCACTCAGAACTTCCAAAGAATTGGCAA  200
        ||||||   ||| |||||||||||||||||||    ||||| ||||| 
seq2  --AACAAA---CAG-TTCTATAGCACTCAGAACT---CAAGAA-TGGCA-  154

seq1  TTAAATGTCATTTTAATGGAAAGTTATTTCCATGGAATGTGTGAAGGGCA  250
       ||||||||||||||||| ||   ||||||||||||||||||||||||||
seq2  -TAAATGTCATTTTAATGCAA--GTATTTCCATGGAATGTGTGAAGGGCA  201

seq1  CGTTATTGTCTCTCATCATATGAGAGCAAATGTAAACAAGAGTTCTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTGTCTCTCATCATATGAGAGCAAATGTAAACAAGAGTTCTGTGC  251

seq1  TCTGACAATGGAGGATACTGATTGGTGTTATGTGAAGATTTTTGTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAATGGAGGATACTGATTGGTGTTATGTGAAGATTTTTGTTTATG  301

seq1  AAAACGTAACCTTTCCTTTGATTTCCATGGTAATGTTCCAAGAAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAACCTTTCCTTTGATTTCCATGGTAATGTTCCAAGAAAACCCT  351

seq1  TAATAGAAAAATTATTATTTGGTGTGCAAATTCCTTTACATTTGATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAAAATTATTATTTGGTGTGCAAATTCCTTTACATTTGATTCTT  401

seq1  CAATTAAGTCTTGAAATGAACTGCCTTTTTAAATAGTCACCATTAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGTCTTGAAATGAACTGCCTTTTTAAATAGTCACCATTAAAAAG  451

seq1  AAAAGGCCATTTCTGACTACACGGTGAGGAGACTGTAATAAACTGGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCATTTCTGACTACACGGTGAGGAGACTGTAATAAACTGGTCCC  501

seq1  AAATGAATTGAATAATCCATAAGACAGTTAAGCTCAGAGTTTATTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTGAATAATCCATAAGACAGTTAAGCTCAGAGTTTATTTTTTG  551

seq1  GGCTGAAACTCATACAAAAGTTTGAGGACCCATATTCCATCAGGAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAACTCATACAAAAGTTTGAGGACCCATATTCCATCAGGAGCTGG  601

seq1  TTTGGTTCTGTGAACATGGCTTTACGTGCAGCTGGGTTTATATTGAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTGTGAACATGGCTTTACGTGCAGCTGGGTTTATATTGAACAG  651

seq1  CAGCTCTCCCAATTCTTAGTGCAGCAAACGATTCAGCTGAAATATCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCCAATTCTTAGTGCAGCAAACGATTCAGCTGAAATATCTGAA  701

seq1  TATCAGCTTTCTCATCTATAAATTGTAGATAATGATTACTACATCATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTTTCTCATCTATAAATTGTAGATAATGATTACTACATCATGGA  751

seq1  GTAGTTGTGCATCCGGCATGAAATAAGTTATTTGAGGCTGATGTATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTGCATCCGGCATGAAATAAGTTATTTGAGGCTGATGTATTCCT  801

seq1  TTAATAATGTAAAAAGAATATTGAATTCAGTTCAGGACCATTATAAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGTAAAAAGAATATTGAATTCAGTTCAGGACCATTATAAGATT  851

seq1  TTTTTGATTACTTTCAGCTTGGGTGAAGCTTTAAATTCTTAGTTAAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATTACTTTCAGCTTGGGTGAAGCTTTAAATTCTTAGTTAAATTC  901

seq1  CTTTTCTAAAGCACTCATTTATTGTCTATTATTTTTCTAGTTATCTAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAAGCACTCATTTATTGTCTATTATTTTTCTAGTTATCTAGGT  951

seq1  GCATTGGGGAATTAAAATCATCATTTAAAAATCATCCCATGGCTATCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGGAATTAAAATCATCATTTAAAAATCATCCCATGGCTATCAAA  1001

seq1  AGCTCATCAATTGTTAGATGCTAATGGGAAAGTCAAGAATCTGCTCCAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCAATTGTTAGATGCTAATGGGAAAGTCAAGAATCTGCTCCAAC  1051

seq1  TTATTACTGTAGGCGTGCACAGAGCTATCTGGGGAAAAGCAAGGGCTGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTGTAGGCGTGCACAGAGCTATCTGGGGAAAAGCAAGGGCTGCT  1101

seq1  TTGAATTC  1158
      ||||||||
seq2  TTGAATTC  1109