BAC Information

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BAC

Clone NameB6Ng01-123O09
Chromosome14 (Build37)
Map Location 68,262,759 - 68,397,070
singlet/doubletdoublet
Overlap geneCdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123O09.bB6Ng01-123O09.g
ACCDH926944DH926945
length5491,145
definitionDH926944|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O09, 5' end.DH926945|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,396,516 - 68,397,070)(68,262,759 - 68,263,925)
sequence
catccacaggcctaagatcccggctttatctctgtgttagaggaggtccc
attctagtatctcctggcctgtgggcctctgttcatgaactgaggctaca
ttgtattatcacagacaggtttactcctcattgctccctcccctccccca
gtgccattcctctttccctctttccttttgtatttttccatctgggcctt
agaagcctggaatttcaaatgacttgaccctggggtagctcagtggtagg
gcactcacatggcatgctcatacccctattttcaggcccaagaaagaaag
ggagaagggagaggaaggcaaggaggagagggaaggaaggggaaagggga
gagagggaatgaactaatgctgcagggcctgctaggatagagctgtgatt
ctagctgggagggaggaggctgaagctggaggattccgccttgaaggcca
gcctgaacaacttagtaagacttcaagtgtcaaaattttagcaaagtaag
aataaggctggtgggtgcagctcacttggagtgcacatacgtagtgtgc
gaattcagcagtcatagaccattagacctgtttatttggcaaaatgacgc
atattagtgtcttccagagagaatggagtgtgccgtaagggatggggcat
ggtagcgccaagttacgaatttttatgatatttctctaggaagaaaaaag
aaggaaggaagaagacgcttcttatgctctcgcccctcttgtgatgtcat
tgttgcttctcccgttgggtattatcttacttttttttttttggggggtc
ccaccccactgagaatgctgcagggctgagacatctctgactgttcactc
cctactcatcaggatgcctgttagtgcacagtgatggccagagagaaagt
gacctggtaccttatgttctgacacactaggaacctaatcacacctcagg
atatctcaccacacgcaaggggggatttgaatctgaagacacagccacca
agataaacaatctaagtcctgcctatgtgtctactcacaaatgggctgca
tctacgcaacacctccttcctcctgctcacatctttctcaattcctattc
taaaatcctgaggaagcccaggttccactcaacagcaaatctgattttgg
gtggggggacaattctaagttacatcactttcccccttaaaactctgcaa
tggctgcctaatgtgatgggggaaattcactcctatttcaccctctgttc
agcatgtctacaggctctggctctaatgggttctggcctcatcacacatc
tcagcttcatttccatcctggccatcggtacaggacccccgagaccctta
cagcttgcctcctctttctaaaaagctcttcctggccaggacaacctggc
tggttttgaccttcatgtctcagacccagcactgtcagatcctgaagcat
atggacaactatgctctctgatagacattttagtatcttttacaggctaa
tatttttctaggactttaagtagctgacaaatgaaagtatttcagaccca
atgccgtcaactttcaggttttgtttgttttggtttacctataactggag
aatccttttcacttttctgcagggcttgaccgaagcacatatcatgttct
ttccagatcaatctcttattcaccattcttagtgatggattgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_68396516_68397070
seq2: B6Ng01-123O09.b_48_602 (reverse)

seq1  GCACACTACGTATGTGCACTCCAAGTGAGCTGCACCCACCAGCCTTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTACGTATGTGCACTCCAAGTGAGCTGCACCCACCAGCCTTATTC  50

seq1  TTACTTTGCTAAAATTTTGACACTTGAAGTCTTACTAAGTTGTTCAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGCTAAAATTTTGACACTTGAAGTCTTACTAAGTTGTTCAGGCT  100

seq1  GGCCTTCAAGGCGGAATCCTCCAGCTTCAGCCTCCTCCCTCCCAGCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAAGGCGGAATCCTCCAGCTTCAGCCTCCTCCCTCCCAGCTAGA  150

seq1  ATCACAGCTCTATCCTAGCAGGCCCTGCAGCATTAGTTCATTCCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTCTATCCTAGCAGGCCCTGCAGCATTAGTTCATTCCCTCTCT  200

seq1  CCCCTTTCCCCTTCCTTCCCTCTCCTCCTTGCCTTCCTCTCCCTTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCCCCTTCCTTCCCTCTCCTCCTTGCCTTCCTCTCCCTTCTCCC  250

seq1  TTTCTTTCTTGGGCCTGAAAATAGGGGTATGAGCATGCCATGTGAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTGGGCCTGAAAATAGGGGTATGAGCATGCCATGTGAGTGCC  300

seq1  CTACCACTGAGCTACCCCAGGGTCAAGTCATTTGAAATTCCAGGCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGAGCTACCCCAGGGTCAAGTCATTTGAAATTCCAGGCTTCTA  350

seq1  AGGCCCAGATGGAAAAATACAAAAGGAAAGAGGGAAAGAGGAATGGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGATGGAAAAATACAAAAGGAAAGAGGGAAAGAGGAATGGCACT  400

seq1  GGGGGAGGGGAGGGAGCAATGAGGAGTAAACCTGTCTGTGATAATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGAGGGAGCAATGAGGAGTAAACCTGTCTGTGATAATACAAT  450

seq1  GTAGCCTCAGTTCATGAACAGAGGCCCACAGGCCAGGAGATACTAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTCAGTTCATGAACAGAGGCCCACAGGCCAGGAGATACTAGAATG  500

seq1  GGACCTCCTCTAACACAGAGATAAAGCCGGGATCTTAGGCCTGTGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCTCTAACACAGAGATAAAGCCGGGATCTTAGGCCTGTGGATGG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr14_68262759_68263925
seq2: B6Ng01-123O09.g_68_1212

seq1  GAATTCAGCAGTCATAGACCATTAGACCTGTTTATTTGGCAAAATGACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGTCATAGACCATTAGACCTGTTTATTTGGCAAAATGACGC  50

seq1  ATATTAGTGTCTTCCAGAGAGAATGGAGTGTGCCGTAAGGGATGGGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTGTCTTCCAGAGAGAATGGAGTGTGCCGTAAGGGATGGGGCAT  100

seq1  GGTAGCGCCAAGTTACGAATTTTTATGATATTTCTCTAGGAAGAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCGCCAAGTTACGAATTTTTATGATATTTCTCTAGGAAGAAAAAAG  150

seq1  AAGGAAGGAAGAAGACGCTTCTTATGCTCTCGCCCCTCTTGTGATGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGAAGACGCTTCTTATGCTCTCGCCCCTCTTGTGATGTCAT  200

seq1  TGTTGCTTCTCCCGTTGGGTATTATCTTACTTTTTTTTTTTTGGGGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTCTCCCGTTGGGTATTATCTTACTTTTTTTTTTTTGGGGGGTC  250

seq1  CCACCCCACTGAGAATGCTGCAGGGCTGAGACATCTCTGACTGTTCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACTGAGAATGCTGCAGGGCTGAGACATCTCTGACTGTTCACTC  300

seq1  CCTACTCATCAGGATGCCTGTTAGTGCACAGTGATGGCCAGAGAGAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCATCAGGATGCCTGTTAGTGCACAGTGATGGCCAGAGAGAAAGT  350

seq1  GACCTGGTACCTTATGTTCTGACACACTAGGAACCTAATCACACCTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTACCTTATGTTCTGACACACTAGGAACCTAATCACACCTCAGG  400

seq1  ATATCTCACCACACGCAAGGGGGGATTTGAATCTGAAGACACAGCCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACCACACGCAAGGGGGGATTTGAATCTGAAGACACAGCCACCA  450

seq1  AGATAAACAATCTAAGTCCTGCCTATGTGTCTACTCACAAATGGGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACAATCTAAGTCCTGCCTATGTGTCTACTCACAAATGGGCTGCA  500

seq1  TCTACGCAACACCTCCTTCCTCCTGCTCACATCTTTCTCAATTCCTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGCAACACCTCCTTCCTCCTGCTCACATCTTTCTCAATTCCTATTC  550

seq1  TAAAATCCTGAGGAAGCCCAGGTTCCACTCAACAGCAAATCTGATTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTGAGGAAGCCCAGGTTCCACTCAACAGCAAATCTGATTTTGG  600

seq1  GTGGGGGGACAATTCTAAGTTACATCACTTTCCCCCTTAAAACTCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGACAATTCTAAGTTACATCACTTTCCCCCTTAAAACTCTGCAA  650

seq1  TGGCTGCCTAATGTGATGGGGGAAATTCACTCCTATTTCACCCTCTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTAATGTGATGGGGGAAATTCACTCCTATTTCACCCTCTGTTC  700

seq1  AGCATGTCTACAGGCTCTGGCTCTAATGGGTTCTGGCCTCATCACACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCTACAGGCTCTGGCTCTAATGGGTTCTGGCCTCATCACACATC  750

seq1  TCAGCTTCATTTCCATCCTGGCCATCGGTACAGGACCCCCGAGACCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCATTTCCATCCTGGCCATCGGTACAGGACCCCCGAGACCCTTA  800

seq1  CAGCTTGCCTCCTCTTTCTAAAAAGCTCTTCCTGGCCAGGACAACCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCTCCTCTTTCTAAAAAGCTCTTCCTGGCCAGGACAACCTGGC  850

seq1  TGGTTTTGACCTTCATGTCTCAGACCCAGCACTGTTCAGGATCCTGAAGC  900
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  TGGTTTTGACCTTCATGTCTCAGACCCAGCACTG-TCA-GATCCTGAAGC  898

seq1  ATATGGACAACTATGCTCTCTGATAGACATTTTTAAGTATCTTTTACAGG  950
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  ATATGGACAACTATGCTCTCTGATAGACATTTT--AGTATCTTTTACAGG  946

seq1  CTTAATATTTTTCTAGAACTTTAAAGTAGCTGACAAATTGAAAAGTATTT  1000
      | |||||||||||||| ||||| |||||||||||||||   |||||||||
seq2  C-TAATATTTTTCTAGGACTTT-AAGTAGCTGACAAAT--GAAAGTATTT  992

seq1  CAAGACTC-ATGCCGTC-ACTTTCAAGTTTTTGTTTGTTTTGGTTTTAAC  1048
      | |||| | |||||||| |||||| || ||||||||||||||||||  ||
seq2  C-AGACCCAATGCCGTCAACTTTC-AGGTTTTGTTTGTTTTGGTTT--AC  1038

seq1  TTATAATCTGCAGAATCCCTTTTCCACTTTTCTGCAGGCTTTAGCAGAAG  1098
       ||||| ||| |||||||  ||| ||||||||||||||  ||  | ||| 
seq2  CTATAA-CTGGAGAATCC--TTTTCACTTTTCTGCAGGGCTTGACCGAA-  1084

seq1  CGCACATATCAATGGTCTCTCCACAATCTATCTCTTTACTCAACCCATTC  1148
       ||||||||| ||| ||| ||||  ||| ||||| ||| |||  ||||||
seq2  -GCACATATC-ATGTTCTTTCCA-GATCAATCTC-TTATTCA--CCATTC  1128

seq1  TTAGTTACATGAATTGCTA  1167
      |||||   ||| |||||||
seq2  TTAGT--GATGGATTGCTA  1145