BAC Information

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BAC

Clone NameB6Ng01-124K04
Chromosome14 (Build37)
Map Location 30,779,185 - 30,974,397
singlet/doubletdoublet
Overlap geneSelk, Actr8, Il17rb, Chdh, Cacna1d
Upstream geneCacna2d3, Lrtm1, Ppia-ps15, EG665431
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124K04.bB6Ng01-124K04.g
ACCDH927492DH927493
length1,0931,088
definitionDH927492|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K04, 5' end.DH927493|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,779,185 - 30,780,289)(30,973,282 - 30,974,397)
sequence
gaattcaggaaaacaaagggtctattgaggaactagaaaccagagagaat
aatctaagtggtatcaaaggaacctcccacagctaaccagggcgttatgt
ggaaggtggtggctaaaaggctaatgagcagattggtgaggctgtattga
actggcagccagaagtaacacaggttgaaacacagggaggctagggatag
tttgggatatcactgcattaaggtgcaggaataaaatctaaagaggaatg
aagaggaagtaactggcctgagatccggggtttgctcccttccttgtgtg
gctactggtgctgtttgtttgttgagacaaggtctcactgtgtaacgcct
gctggatggaaacttgctatgtaactcaaactgacctcaactcacaggac
tgcagcctaagccttccaactgctcggcttacaagtgtgcaccaccacac
cttgtacaggggtaccaggcggatgaggttcctgatcccttagcgtttac
taatgaagagtgacaacactaaataatcaggttagtaattccatgttgtg
ataaggactatgaataaactgaccagagatgaggaatcaaggagagacac
tcaaatgatgacactcgggctgacaactgaaggggaaaggatggggaact
gtcggtgagtcagttaacgtgttacaggaagaatagctatgtgcacgttc
agggagatgaaaagacttagggcactcacaaaactgtaaaaaaaaaaaaa
aaattattgccagagtgtgttttgggtgggaatgtgtagcagaagctaaa
atcaagtgaacaggtcaggctatatcagtggatactgaaaaggacctagt
ttgtaagagcaatgggagatcactacattttagtgtctaaagggttttaa
gcaaaacaaagttttgttttgtttttttaaataaatcattcttgttgcag
tctgacaaagttaaccagggattcagtagagtaaaagagagcacgagagt
tgaaggctacgtcatgtttagtcctagttctagataggtcttgagaaaaa
atcacggacccagttgggaagaaagctcggttggtaggactgc
gaattcattggcttggattttggacatagtaaaaagaagccacagtccaa
tggactctgatttttttgaagaactgaaagaatttgggggcatagctcag
cactagagtgtttgcctgatataagaaaggcccaaggttcaaaccccagt
tctgaaaaagatgaggaaaaatggttaaggagctgaaggaaactctctgg
agcacaaatatctcctcaaaaaggtgaaatgacataggacagcagtgcat
gcctttaatcccagcactctggaagcagaggcaggtgaatctctgtgggt
tcaaggccagcctggtctacacagtgaattccaggacagcctgggctaca
cagagaaaccctgtctcaaaacaaaacaaaataaaacaaaaacaaaattt
taaaaatctgggttttttttttttttaaagttaagtgacacaaagaagat
ttcaaataaaagccaagaaaattgatcaacaaatctacactataagaaat
ggtaaacgaaactcttcatgctaaaagaaaaataattttaggtagaaaca
aatacatattttagaaataagcaccaaaaaaaccccacaaatgtaaagat
cgaggtgctccccccacacttctaaatttcttgaaatgatgtcatttaat
ttaaaaagtagtgtcaagcttccacagagagtgtcatgggcttataggga
cccacagcagggacagggaaggttgggatggactaatgggagccttcctg
ttgtaaagtccttaaaatagtttgccatgctaatgtaaggatgcatgaca
accttatttttttaaaaatgaaacacaataatgccacaaaccattaagag
attaaacaggatcagtgccccagataagtcagagagcaggaagggcagat
gaagcacgtgcagtatagaaaaataattatataagcgcacagcactgtgt
ggtgctcatgcttgatgtctgacatggaagctgagcagcagattataagt
tcagcagcttgactatatagtagaattcacgcagaaaaacaatagaatgt
taatgcaagatgctgaagctgtagcctcatcagactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30779185_30780289
seq2: B6Ng01-124K04.b_48_1140

seq1  GAATTCAGGAAAACAAAGGGTCTATTGAGGAACTAGAAACCAGAGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAAACAAAGGGTCTATTGAGGAACTAGAAACCAGAGAGAAT  50

seq1  AATCTAAGTGGTATCAAAGGAACCTCCCACAGCTAACCAGGGCGTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGTGGTATCAAAGGAACCTCCCACAGCTAACCAGGGCGTTATGT  100

seq1  GGAAGGTGGTGGCTAAAAGGCTAATGAGCAGATTGGTGAGGCTGTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGTGGCTAAAAGGCTAATGAGCAGATTGGTGAGGCTGTATTGA  150

seq1  ACTGGCAGCCAGAAGTAACACAGGTTGAAACACAGGGAGGCTAGGGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGCCAGAAGTAACACAGGTTGAAACACAGGGAGGCTAGGGATAG  200

seq1  TTTGGGATATCACTGCATTAAGGTGCAGGAATAAAATCTAAAGAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATATCACTGCATTAAGGTGCAGGAATAAAATCTAAAGAGGAATG  250

seq1  AAGAGGAAGTAACTGGCCTGAGATCCGGGGTTTGCTCCCTTCCTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGTAACTGGCCTGAGATCCGGGGTTTGCTCCCTTCCTTGTGTG  300

seq1  GCTACTGGTGCTGTTTGTTTGTTGAGACAAGGTCTCACTGTGTAACGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGGTGCTGTTTGTTTGTTGAGACAAGGTCTCACTGTGTAACGCCT  350

seq1  GCTGGATGGAAACTTGCTATGTAACTCAAACTGACCTCAACTCACAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGGAAACTTGCTATGTAACTCAAACTGACCTCAACTCACAGGAC  400

seq1  TGCAGCCTAAGCCTTCCAACTGCTCGGCTTACAAGTGTGCACCACCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTAAGCCTTCCAACTGCTCGGCTTACAAGTGTGCACCACCACAC  450

seq1  CTTGTACAGGGGTACCAGGCGGATGAGGTTCCTGATCCCTTAGCGTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAGGGGTACCAGGCGGATGAGGTTCCTGATCCCTTAGCGTTTAC  500

seq1  TAATGAAGAGTGACAACACTAAATAATCAGGTTAGTAATTCCATGTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGAGTGACAACACTAAATAATCAGGTTAGTAATTCCATGTTGTG  550

seq1  ATAAGGACTATGAATAAACTGACCAGAGATGAGGAATCAAGGAGAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACTATGAATAAACTGACCAGAGATGAGGAATCAAGGAGAGACAC  600

seq1  TCAAATGATGACACTCGGGCTGACAACTGAAGGGGAAAGGATGGGGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGATGACACTCGGGCTGACAACTGAAGGGGAAAGGATGGGGAACT  650

seq1  GTCGGTGAGTCAGTTAACGTGTTACAGGAAGAATAGCTATGTGCACGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGAGTCAGTTAACGTGTTACAGGAAGAATAGCTATGTGCACGTTC  700

seq1  AGGGAGATGAAAAGACTTAGGGCACTCACAAAACTGTAAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGAAAAGACTTAGGGCACTCACAAAACTGTAAAAAAAAAAAAA  750

seq1  AAATTATTGCCAGAGTGTGTTTTGGGTGGGAATGTGTAGCAGAAGCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTGCCAGAGTGTGTTTTGGGTGGGAATGTGTAGCAGAAGCTAAA  800

seq1  ATCAAGTGAACAGGTCAGGCTATATCAGTGGATACTGAAAAGGACCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAACAGGTCAGGCTATATCAGTGGATACTGAAAAGGACCTAGT  850

seq1  TTGTAAGAGCAATGGGAGATCACTACATTTTAGTGTCTAAAGGGTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAGCAATGGGAGATCACTACATTTTAGTGTCTAAAGGGTTTTAA  900

seq1  GCAAAACAAAGTTTTGTTTTGTTTTTTTTAAATAAATCATTCTTGTTGCA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAAACAAAGTTTTGTTTTG-TTTTTTTAAATAAATCATTCTTGTTGCA  949

seq1  GTCTGACAAAAGTATAACCAGGGATTTCAGTTAGAAGGAAAAGAGAGCAC  1000
      ||||||| ||||| |||||||||| ||||| ||| || ||||||||||||
seq2  GTCTGAC-AAAGT-TAACCAGGGA-TTCAG-TAG-AGTAAAAGAGAGCAC  994

seq1  AGAGAGTGAGAGGCAACGTCATGGTTTAAGCCCAGGTCTAGAAAGGCCCT  1050
       ||||||   |||| ||||||| |||||  || || |||||| |||  ||
seq2  -GAGAGTTGAAGGCTACGTCAT-GTTTAGTCCTAGTTCTAGATAGG-TCT  1041

seq1  TGAG-AAAAATCACGGACCCAGGTTGGGAAGAGAGCTCGGTGGGTAAAGT  1099
      |||| |||||||||||||||| |||||||||| |||||||| ||||    
seq2  TGAGAAAAAATCACGGACCCA-GTTGGGAAGAAAGCTCGGTTGGTA---G  1087

seq1  GACTGC  1105
      ||||||
seq2  GACTGC  1093

seq1: chr14_30973282_30974397
seq2: B6Ng01-124K04.g_69_1156 (reverse)

seq1  TCAGTCCTTGATGAAGCTTACAGCTGTCTGCCATCTTGCTATTTTACCTG  50
      ||||||  |||||| || ||||||| || | ||||||||    ||| |  
seq2  TCAGTC--TGATGAGGC-TACAGCT-TCAG-CATCTTGC---ATTAAC-A  41

seq1  TTCTATTGTTTTTCTTGCGTTGAATTCTTACTATATAGCTCAGGCTGGCC  100
      |||||||||||||| |||| ||||||| |||||||||| ||| ||||   
seq2  TTCTATTGTTTTTC-TGCG-TGAATTC-TACTATATAG-TCAAGCTG---  84

seq1  TTGAACTTATAATCTGCTTGCCTCAGCCTTCCAATGTCAGAACATCAAGC  150
       |||||||||||||||||   ||||| ||||| ||||||| |||||||||
seq2  CTGAACTTATAATCTGCT--GCTCAG-CTTCC-ATGTCAG-ACATCAAGC  129

seq1  ATGAGCCACCACACCAAGTGCTGTGCGCTTTATATATTTATTTTTCTATA  200
      ||||| ||||||||  |||||||||||| ||||||| |||||||||||||
seq2  ATGAG-CACCACAC--AGTGCTGTGCGC-TTATATAATTATTTTTCTATA  175

seq1  CTGCACGTGCTTCATCTGCCCTTCCTGCTCTCCTGACTTATTCTGGGGCA  250
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CTGCACGTGCTTCATCTGCCCTTCCTGCTCT-CTGACTTA-TCTGGGGCA  223

seq1  CTGATCCTGTTTAATCTCTTTATGGTTTGTGGCATTATTGTGTTTCATTT  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGATCCTGTTTAATCTCTTAATGGTTTGTGGCATTATTGTGTTTCATTT  273

seq1  TTAAAATATTAAGGTTGTCATGCATCCTTACATTAGCATGGCAAACCTAT  350
      |||||| | |||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAAAAAATAAGGTTGTCATGCATCCTTACATTAGCATGGCAAA-CTAT  322

seq1  TTTAAGGACTTTACAACAGGAAGGCTCCCCTTAGTCCATCCCAACCTTCC  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAAGGACTTTACAACAGGAAGGCTCCCATTAGTCCATCCCAACCTTCC  372

seq1  CTGTCCCTGCTGTGGGTCCCTATAAGCCCATGACACTCTCTGTGGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGCTGTGGGTCCCTATAAGCCCATGACACTCTCTGTGGAAGCT  422

seq1  TGACACTACTTTTTAAATTAAATGACATCATTTCAAGAAATTTAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTACTTTTTAAATTAAATGACATCATTTCAAGAAATTTAGAAGTG  472

seq1  TGGGGGGAGCACCTCGATCTTTACATTTGTGGGGTTTTTTTGGTGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGCACCTCGATCTTTACATTTGTGGGGTTTTTTTGGTGCTTAT  522

seq1  TTCTAAAATATGTATTTGTTTCTACCTAAAATTATTTTTCTTTTAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATATGTATTTGTTTCTACCTAAAATTATTTTTCTTTTAGCATG  572

seq1  AAGAGTTTCGTTTACCATTTCTTATAGTGTAGATTTGTTGATCAATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCGTTTACCATTTCTTATAGTGTAGATTTGTTGATCAATTTTC  622

seq1  TTGGCTTTTATTTGAAATCTTCTTTGTGTCACTTAACTTTAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTATTTGAAATCTTCTTTGTGTCACTTAACTTTAAAAAAAAAA  672

seq1  AAAACCCAGATTTTTAAAATTTTGTTTTTGTTTTATTTTGTTTTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGATTTTTAAAATTTTGTTTTTGTTTTATTTTGTTTTGTTTTG  722

seq1  AGACAGGGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAATTCACTGTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAATTCACTGTGTAG  772

seq1  ACCAGGCTGGCCTTGAACCCACAGAGATTCACCTGCCTCTGCTTCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACCCACAGAGATTCACCTGCCTCTGCTTCCAGAG  822

seq1  TGCTGGGATTAAAGGCATGCACTGCTGTCCTATGTCATTTCACCTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCATGCACTGCTGTCCTATGTCATTTCACCTTTTTG  872

seq1  AGGAGATATTTGTGCTCCAGAGAGTTTCCTTCAGCTCCTTAACCATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATTTGTGCTCCAGAGAGTTTCCTTCAGCTCCTTAACCATTTTT  922

seq1  CCTCATCTTTTTCAGAACTGGGGTTTGAACCTTGGGCCTTTCTTATATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTTTTTCAGAACTGGGGTTTGAACCTTGGGCCTTTCTTATATCA  972

seq1  GGCAAACACTCTAGTGCTGAGCTATGCCCCCAAATTCTTTCAGTTCTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACACTCTAGTGCTGAGCTATGCCCCCAAATTCTTTCAGTTCTTCA  1022

seq1  AAAAAATCAGAGTCCATTGGACTGTGGCTTCTTTTTACTATGTCCAAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGAGTCCATTGGACTGTGGCTTCTTTTTACTATGTCCAAAAT  1072

seq1  CCAAGCCAATGAATTC  1116
      ||||||||||||||||
seq2  CCAAGCCAATGAATTC  1088