BAC Information

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BAC

Clone NameB6Ng01-125O15
Chromosome14 (Build37)
Map Location 37,946,856 - 38,096,297
singlet/doubletdoublet
Overlap geneGhitm
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik
Downstream geneLOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125O15.bB6Ng01-125O15.g
ACCDH928418DH928419
length8751,199
definitionDH928418|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O15, 5' end.DH928419|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,095,425 - 38,096,297)(37,946,856 - 37,948,076)
sequence
gaattctggagagatgcatcttctggggtcttatagagagagcagtgcac
agaacaagcacaaacttggcagcatccactcataggtcttcctaaacagc
ttttggactctaaggtttctgcccacagaatccacagataaaatgcttta
acaacctctcagctgcttctgtaagcaaaggcatagtgaagtcactgaac
tggaccactcagtgtgtgggtaagagttaatttgggaatcaaagtgctag
gagaaaaggtggcagtgggaagagcattgttagtcttgtggggacaggta
ggaggggaagtagaggggaagaccataatcctctggaagttaagtgtggg
gagctttgatatattgtaggggacttgaattaatcaggaaataggtattg
tttacccaaggcatgagtgggtatgggaaataatgacttttcctaaagaa
tagaaacccacttcacactgaggaaggctaggttttggtttttctttacc
cagtagcaatccttttgggtacctggtagagaccagcctgagctgagccc
aggttgtcatttaggacattttcagtggtgctgccatctgggagcccaac
ttggaacagccaccataatctaacacattcccaacacagacagaacagta
cacatttttttgtgtgtggagtacagacactccacaaaacataagaattg
ggaacagccttctttctcccacatcctcgccagcatctgctgtaaccttg
aattttttatcttagccattctgactggtatgagatggaatctcatggtt
gtttgatttgctctccctgatgattaaggatgctgaacattttttatggt
gcttctagccttcgtattcctcagg
gaattcttcacaagtggagaggccttggtgatgaaagtgggctggaaaac
cctggaaggtagtgtccggagacacacaagccttgcagccaacatggtgg
gcgatacaccggtttactaagcagatctgaaatgctagttagaaaggtag
aggggggaaaaatttagttaattaagaaggaaacatagtagccaaaatca
gaagaaacttaatttaaatagaagaaaaaaatcagaacagtggcctcatt
aatttttaatgctgtatccttcccttgttccttctgactcaacaaatcta
gtttagaatgggcagccaatgatataaatccaagtttgaccagatatatg
taatacagaatcaatgttattatgttgacacaatcacagattttacaaac
atagcttggcctgatatttactccatcattcaatgagtaaaagtaaaaga
atctgtgtgacatttcagcacaagaaaaacatcatccagagaaaagataa
ctaaaccactcgagactaaaaaccatgaacaaaagccaggcatgcaaatg
tctaccaagtaggtcagatgttacttccctttaagatacgacagatacat
tcaaattaaattattccactacataacattcaatcaaaataaacaaaatt
gccctgctaggtttccctgttaaaacaccttctggtattcttaatagggt
aacccctgcccccaacattctaaaattgaattgtctcagttccagttaga
ctatatcgataaatagttaagtacacgcctttctgcgatgctaaaggcac
atttctggtcaatgagttgtgatgaattttaggcaagtgatttgtatttc
cgctttctccccatttgtaaaatatttaaatacaagaaaacttggccaaa
atgggacttgaaatcgcccatgaattaccctaaaactataggatgtaaag
aagttttactagcacctccaaagtagatttccggaactacgagtgcacca
cagctctaggcatctgacttgcgaaaaaacccggagccttttgtacttcc
atggcaataatcatctcaactatgcttcagctactgaccggaacagaggc
tactagctgcgtgccttagtcgtgacacgtcagagagagaggttatctgc
atactagtgcaatctgggccttggaaccggctctagtgcgtgggtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38095425_38096297
seq2: B6Ng01-125O15.b_47_921 (reverse)

seq1  CCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATC  50
      |||||||||||| ||| |||| |||||||||  |||||||||||||||||
seq2  CCTGAGGAATAC-GAA-GGCT-AGAAGCACCATAAAAAATGTTCAGCATC  47

seq1  CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCA  100
      ||||||||||||||| | ||||||| |||||||| |||||||||||||||
seq2  CTTAATCATCAGGGAGA-GCAAATC-AAACAACCATGAGATTCCATCTCA  95

seq1  TACCAGTCAGAATGGCTAAGATAAAAAATTC-AGGTTACAGCAGATGCTG  149
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACCAGTCAGAATGGCTAAGATAAAAAATTCAAGGTTACAGCAGATGCTG  145

seq1  GCGAGGATGT-GGAGAAAG-AGGCTGTT-CCAATTCTTATG-TTTGTGGA  195
      |||||||||| |||||||| |||||||| |||||||||||| ||||||||
seq2  GCGAGGATGTGGGAGAAAGAAGGCTGTTCCCAATTCTTATGTTTTGTGGA  195

seq1  GTGTCTGTACTCCACACAC--AAAAATGTGTACTGTTCTGTCTGTGTTGG  243
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GTGTCTGTACTCCACACACAAAAAAATGTGTACTGTTCTGTCTGTGTTGG  245

seq1  GAATGTGTTAGATTATGGTGGCTGTTCCAAGTTGGGCTCCCAGATGGCAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTTAGATTATGGTGGCTGTTCCAAGTTGGGCTCCCAGATGGCAG  295

seq1  CACCACTGAAAATGTCCTAAATGACAACCTGGGCTCAGCTCAGGCTGGTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAAAATGTCCTAAATGACAACCTGGGCTCAGCTCAGGCTGGTC  345

seq1  TCTACCAGGTACCCAAAAGGATTGCTACTGGGTAAAGAAAAACCAAAACC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGGTACCCAAAAGGATTGCTACTGGGTAAAGAAAAACCAAAACC  395

seq1  TAGCCTTCCTCAGTGTGAAGTGGGTTTCTATTCTTTAGGAAAAGTCATTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCCTCAGTGTGAAGTGGGTTTCTATTCTTTAGGAAAAGTCATTA  445

seq1  TTTCCCATACCCACTCATGCCTTGGGTAAACAATACCTATTTCCTGATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATACCCACTCATGCCTTGGGTAAACAATACCTATTTCCTGATTA  495

seq1  ATTCAAGTCCCCTACAATATATCAAAGCTCCCCACACTTAACTTCCAGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCCCCTACAATATATCAAAGCTCCCCACACTTAACTTCCAGAG  545

seq1  GATTATGGTCTTCCCCTCTACTTCCCCTCCTACCTGTCCCCACAAGACTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGTCTTCCCCTCTACTTCCCCTCCTACCTGTCCCCACAAGACTA  595

seq1  ACAATGCTCTTCCCACTGCCACCTTTTCTCCTAGCACTTTGATTCCCAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTCTTCCCACTGCCACCTTTTCTCCTAGCACTTTGATTCCCAAA  645

seq1  TTAACTCTTACCCACACACTGAGTGGTCCAGTTCAGTGACTTCACTATGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTACCCACACACTGAGTGGTCCAGTTCAGTGACTTCACTATGC  695

seq1  CTTTGCTTACAGAAGCAGCTGAGAGGTTGTTAAAGCATTTTATCTGTGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTACAGAAGCAGCTGAGAGGTTGTTAAAGCATTTTATCTGTGGA  745

seq1  TTCTGTGGGCAGAAACCTTAGAGTCCAAAAGCTGTTTAGGAAGACCTATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGCAGAAACCTTAGAGTCCAAAAGCTGTTTAGGAAGACCTATG  795

seq1  AGTGGATGCTGCCAAGTTTGTGCTTGTTCTGTGCACTGCTCTCTCTATAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGCTGCCAAGTTTGTGCTTGTTCTGTGCACTGCTCTCTCTATAA  845

seq1  GACCCCAGAAGATGCATCTCTCCAGAATTC  873
      ||||||||||||||||||||||||||||||
seq2  GACCCCAGAAGATGCATCTCTCCAGAATTC  875

seq1: chr14_37946856_37948076
seq2: B6Ng01-125O15.g_69_1267

seq1  GAATTCTTCACAAGTGGAGAGGCCTTGGTGATGAAAGTGGGCTGGAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAAGTGGAGAGGCCTTGGTGATGAAAGTGGGCTGGAAAAC  50

seq1  CCTGGAAGGTAGTGTCCGGAGACACACAAGCCTTGCAGCCAACATGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGTAGTGTCCGGAGACACACAAGCCTTGCAGCCAACATGGTGG  100

seq1  GCGATACACCGGTTTACTAAGCAGATCTGAAATGCTAGTTAGAAAGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATACACCGGTTTACTAAGCAGATCTGAAATGCTAGTTAGAAAGGTAG  150

seq1  AGGGGGGAAAAATTTAGTTAATTAAGAAGGAAACATAGTAGCCAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAAAAATTTAGTTAATTAAGAAGGAAACATAGTAGCCAAAATCA  200

seq1  GAAGAAACTTAATTTAAATAGAAGAAAAAAATCAGAACAGTGGCCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACTTAATTTAAATAGAAGAAAAAAATCAGAACAGTGGCCTCATT  250

seq1  AATTTTTAATGCTGTATCCTTCCCTTGTTCCTTCTGACTCAACAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATGCTGTATCCTTCCCTTGTTCCTTCTGACTCAACAAATCTA  300

seq1  GTTTAGAATGGGCAGCCAATGATATAAATCCAAGTTTGACCAGATATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAATGGGCAGCCAATGATATAAATCCAAGTTTGACCAGATATATG  350

seq1  TAATACAGAATCAATGTTATTATGTTGACACAATCACAGATTTTACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGAATCAATGTTATTATGTTGACACAATCACAGATTTTACAAAC  400

seq1  ATAGCTTGGCCTGATATTTACTCCATCATTCAATGAGTAAAAGTAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGGCCTGATATTTACTCCATCATTCAATGAGTAAAAGTAAAAGA  450

seq1  ATCTGTGTGACATTTCAGCACAAGAAAAACATCATCCAGAGAAAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGACATTTCAGCACAAGAAAAACATCATCCAGAGAAAAGATAA  500

seq1  CTAAACCACTCGAGACTAAAAACCATGAACAAAAGCCAGGCATGCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCACTCGAGACTAAAAACCATGAACAAAAGCCAGGCATGCAAATG  550

seq1  TCTACCAAGTAGGTCAGATGTTACTTCCCTTTAAGATACGACAGATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAGTAGGTCAGATGTTACTTCCCTTTAAGATACGACAGATACAT  600

seq1  TCAAATTAAATTATTCCACTACATAACATTCAATCAAAATAAACAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAATTATTCCACTACATAACATTCAATCAAAATAAACAAAATT  650

seq1  GCCCTGCTAGGTTTCCCTGTTAAAACACCTTCTGGTATTCTTAATAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTAGGTTTCCCTGTTAAAACACCTTCTGGTATTCTTAATAGGGT  700

seq1  AACCCCTGCCCCCAACATTCTAAAATTGAATTGTCTCAGTTCCAGTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGCCCCCAACATTCTAAAATTGAATTGTCTCAGTTCCAGTTAGA  750

seq1  CTATATCGATAAATAGTTAAGTACACGCCTTTCTGCGATGCTAAAGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCGATAAATAGTTAAGTACACGCCTTTCTGCGATGCTAAAGGCAC  800

seq1  ATTTCTGGTCAATGAGTTGTGATGAATTTTAGGCAAGTGATTTGTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGTCAATGAGTTGTGATGAATTTTAGGCAAGTGATTTGTATTTC  850

seq1  CGCTTTCTCCCCATTTGTAAAATATTTAAATACAAGAAAACTTGGCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTCCCCATTTGTAAAATATTTAAATACAAGAAAACTTGGCCAAA  900

seq1  ATGGGACTTTGAAATCGCCCATGAATTACCCTAAAACTATAGGAATGTAA  950
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGGAC-TTGAAATCGCCCATGAATTACCCTAAAACTATAGG-ATGTAA  948

seq1  AGAAGTTTTAACTAGCACCTCCAAAGTTAAGAATTTCCGGAACTACGAAG  1000
      ||||||||| |||||||||||||||||  || ||||||||||||||| ||
seq2  AGAAGTTTT-ACTAGCACCTCCAAAGT--AG-ATTTCCGGAACTACG-AG  993

seq1  TGCA-CACAGCTCTAGGCATCTGACCTTGCGGAAAAAACCCGGAGCCCTT  1049
      |||| ||||||||||||||||||| ||||| ||||||||||||||||  |
seq2  TGCACCACAGCTCTAGGCATCTGA-CTTGC-GAAAAAACCCGGAGCC--T  1039

seq1  TTGGTACTTTCATGCCATTACATCATCTCAACCTATGGCTTCAGCTTACT  1099
      || |||||| |||| || || |||||||||| |||| |||||||| ||||
seq2  TTTGTACTTCCATGGCAATA-ATCATCTCAA-CTAT-GCTTCAGC-TACT  1085

seq1  GACCCGAACAGAGCCTACCTAGTCTGCGTGGCCTTATGTCGTGGAACAGC  1149
      |||| |||||||| ||| |||| |||||| |||||| ||||||  ||  |
seq2  GACCGGAACAGAGGCTA-CTAG-CTGCGT-GCCTTA-GTCGTGACACGTC  1131

seq1  CAAGAG---GGTTATCTGCCATATATTTAAGTGCAGATTCTGGACGTCTG  1196
        ||||   ||||||||||   ||| |  |||||  | ||||| | | ||
seq2  AGAGAGAGAGGTTATCTGC---ATACT--AGTGC--AATCTGGGCCT-TG  1173

seq1  AAACCGGCTCCTGGGC-TGGGTCTCT  1221
       |||||||||  | || |||||||||
seq2  GAACCGGCTCTAGTGCGTGGGTCTCT  1199