BAC Information

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BAC

Clone NameB6Ng01-125P23
Chromosome14 (Build37)
Map Location 117,500,891 - 117,643,956
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P23.bB6Ng01-125P23.g
ACCDH928480DH928481
length9141,139
definitionDH928480|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P23, 5' end.DH928481|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,643,430 - 117,643,956)(117,500,891 - 117,502,014)
sequence
gaattcatttttaaaaatttaattaattaatttattaattcattcattta
catgccaaatgctgcactccctgcctcccggtcctcccacccagagtccc
tcccctcccctcccctctgagcatgtggtgcccaccttggcatcccccca
ccttggggaatcaagtctctgctagattaggtacatcctctccaactgag
gccagataaggcagctgtgttacagacagatacaacagtccgtctacagc
tttagggagagcctccagctccagctgttacggggtccacatgaagactc
aacagcacatctgccacatatgtgctgtgcctcattccagcctatgttct
ttggttgatagctcagactctgagagctcctaggggtccaggttaattga
ctctgctggtcttcctgtgaggttcctatcaccttcaggactaagactgg
actttaacaacaacagaacaaacaaataaacaaacagaaagcccacataa
tcctagaaactgaacaactctctattcagtgatcacttggtcagggtaga
aataaagaaaaaaataaagactttctagaattcggtgaaaacaaaggcac
aacatacccaaacctacggaacacaatgaaagcagtgctaagaggaaagt
tcatagttctaagtgcctctctaaagaaatagggagatttcacaccagca
accttaacagcacacctgaaagctatagagcaaaaagacgtaggttgaat
tcttaaatctgccctaacatcaccattcagagactctcaagaattttaca
gtgagtgtatcccatgtcgtaatcatcctgccttggtgtctcccactgct
tgagctataacactaacttgagaatactttaaattttggggaaacatata
attctacagtgtaa
gaattcattagaagaaatggaaaacgttgaactggaatatgacaggtggt
tagtgttgtctgagcctttggtaagaagtttgattaggatatctcagtcc
ttaccaaaaacctggacactatcattataatcatttttcacaaaagaaaa
ttagactttgagagaccaagtaatcggctctgcaaccacctgacacaaaa
actgattcatcccagcaaagccacactcgctgtaggatgctttgccatga
gaggggcaatagacacctgattccagttactattagctgatgcctgacat
ctaaaattcttatgtgaagggcagaacaactataaagtgtaggtagggtt
tcatgggtttatgaaattttttcactcttcctagctttggaatttatagt
tttgatatttaaatagaagatcaaattaaccacaaatatggaatgtatct
tattctgtatttgtgtcgtgatggataaatccaatcttaacttttttttt
taaatttgaagaaagagttgcatttcttcttacagtaacaatacttttct
taagaagttttggagaggatactgctctatatgtttatcagatttgtgga
ggggaacttaatattatgatgcaaacttgacatcatcggtttgagaaacc
cgtgagacttagtcatttgtaaatagagcacgtagtccttgttgaattat
tacagaaagtgggtttgagaaccagttcacaatgccagacttcttcttac
tgtttaaatcagaatattttgtgagacaaattctagcttgtagttctccc
atattgctctgacacccttagctgcactaaccatcacatacagatgattt
agagttaagtctgttagcctcagtatttaattacctgatcttcaaccttg
gatctttgtagaacctattgcaagctttagctcatgtaagactgcaagcc
ttggctgaactagtagaacttaaaacagtcctcacagacttattaaaaac
ctttaagtaattactccatcagcaaacctaaataatccaaattaaccaat
taaaggaatgggacaaatgctaaacagacctttatcttgagaagaatctg
aaatgcctggaaagagcttaaagaaaatgttcagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117643430_117643956
seq2: B6Ng01-125P23.b_426_959 (reverse)

seq1  TACACTGTAG-ATTATATGTTT-CCCAAAATTT-AAGTA-TCTCAAGTTA  46
      |||||||||| ||||||||||| |||||||||| ||||| ||||||||||
seq2  TACACTGTAGAATTATATGTTTCCCCAAAATTTAAAGTATTCTCAAGTTA  50

seq1  GTGTTATAGCTCAAGCAGTGGG-GACACC-AGGCAGGATGATTACGAACA  94
      |||||||||||||||||||||| |||||| |||||||||||||||| |||
seq2  GTGTTATAGCTCAAGCAGTGGGAGACACCAAGGCAGGATGATTACG-ACA  99

seq1  TGGGATACACTCACTGT-AAATTCTTGAGAGTCTCTGAATGGTGATGTTA  143
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGATACACTCACTGTAAAATTCTTGAGAGTCTCTGAATGGTGATGTTA  149

seq1  GGGCAGATTTAAGAATTCAACCTACGTCTTTTTGCTCTATAGCTTTCAGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATTTAAGAATTCAACCTACGTCTTTTTGCTCTATAGCTTTCAGG  199

seq1  TGTGCTGTT-AGGTTGCTGGTGTGAAATCTCCCTATTTCTTTAGAGAGGC  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTAAGGTTGCTGGTGTGAAATCTCCCTATTTCTTTAGAGAGGC  249

seq1  ACTTAGAACTATGAACTTTCCTCTTAGCACTGCTTTCATTGTGTTCCGTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAACTATGAACTTTCCTCTTAGCACTGCTTTCATTGTGTTCCGTA  299

seq1  GGTTTGGGTATGTTGTGCCTTTGTTTTCACCGAATTCTAGAAAGTCTTTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGTATGTTGTGCCTTTGTTTTCACCGAATTCTAGAAAGTCTTTA  349

seq1  TTTTTTTCTTTATTTCTACCCTGACCAAGTGATCACTGAATAGAGAGTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTATTTCTACCCTGACCAAGTGATCACTGAATAGAGAGTTG  399

seq1  TTCAGTTTCTAGGATTATGTGGGCTTTCTGTTTGTTTATTTGTTTGTTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCTAGGATTATGTGGGCTTTCTGTTTGTTTATTTGTTTGTTCT  449

seq1  GTTGTTGTTAAAGTCCAGTCTTAGTCCTGAAGGTGATAGGAACCTCACAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTAAAGTCCAGTCTTAGTCCTGAAGGTGATAGGAACCTCACAG  499

seq1  GAAGACCAGCAGAGTCAATTAACCTGGACCCCTAG  527
      |||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGCAGAGTCAATTAACCTGGACCCCTAG  534

seq1: chr14_117500891_117502014
seq2: B6Ng01-125P23.g_69_1207

seq1  GAATTCATTAGAAGAAATGGAAAACGTTGAACTGGAATATGACAGGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAAGAAATGGAAAACGTTGAACTGGAATATGACAGGTGGT  50

seq1  TAGTGTTGTCTGAGCCTTTGGTAAGAAGTTTGATTAGGATATCTCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGTCTGAGCCTTTGGTAAGAAGTTTGATTAGGATATCTCAGTCC  100

seq1  TTACCAAAAACCTGGACACTATCATTATAATCATTTTTCACAAAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAAAACCTGGACACTATCATTATAATCATTTTTCACAAAAGAAAA  150

seq1  TTAGACTTTGAGAGACCAAGTAATCGGCTCTGCAACCACCTGACACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTTGAGAGACCAAGTAATCGGCTCTGCAACCACCTGACACAAAA  200

seq1  ACTGATTCATCCCAGCAAAGCCACACTCGCTGTAGGATGCTTTGCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCATCCCAGCAAAGCCACACTCGCTGTAGGATGCTTTGCCATGA  250

seq1  GAGGGGCAATAGACACCTGATTCCAGTTACTATTAGCTGATGCCTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAATAGACACCTGATTCCAGTTACTATTAGCTGATGCCTGACAT  300

seq1  CTAAAATTCTTATGTGAAGGGCAGAACAACTATAAAGTGTAGGTAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTCTTATGTGAAGGGCAGAACAACTATAAAGTGTAGGTAGGGTT  350

seq1  TCATGGGTTTATGAAATTTTTTCACTCTTCCTAGCTTTGGAATTTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTTTATGAAATTTTTTCACTCTTCCTAGCTTTGGAATTTATAGT  400

seq1  TTTGATATTTAAATAGAAGATCAAATTAACCACAAATATGGAATGTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTTAAATAGAAGATCAAATTAACCACAAATATGGAATGTATCT  450

seq1  TATTCTGTATTTGTGTCGTGATGGATAAATCCAATCTTAACTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTATTTGTGTCGTGATGGATAAATCCAATCTTAACTTTTTTTTT  500

seq1  TAAATTTGAAGAAAGAGTTGCATTTCTTCTTACAGTAACAATACTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGAAGAAAGAGTTGCATTTCTTCTTACAGTAACAATACTTTTCT  550

seq1  TAAGAAGTTTTGGAGAGGATACTGCTCTATATGTTTATCAGATTTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTTTGGAGAGGATACTGCTCTATATGTTTATCAGATTTGTGGA  600

seq1  GGGGAACTTAATATTATGATGCAAACTTGACATCATCGGTTTGAGAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTTAATATTATGATGCAAACTTGACATCATCGGTTTGAGAAACC  650

seq1  CGTGAGACTTAGTCATTTGTAAATAGAGCACGTAGTCCTTGTTGAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGACTTAGTCATTTGTAAATAGAGCACGTAGTCCTTGTTGAATTAT  700

seq1  TACAGAAGGTGGG-TTGAGAACCAGTTCACAATGCCAGACTTCTTCTTAC  749
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGTGGGTTTGAGAACCAGTTCACAATGCCAGACTTCTTCTTAC  750

seq1  TGTTTAAATCAGAATATTTTGTGAGACAAATTCTAGCTTGTAGTTCTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATCAGAATATTTTGTGAGACAAATTCTAGCTTGTAGTTCTCCC  800

seq1  ATATTGCTCTGACACCCTTAGCTGCACTAACCATCACATACAGATGA-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATATTGCTCTGACACCCTTAGCTGCACTAACCATCACATACAGATGATTT  850

seq1  AGAGTTAAGTCTGTTAGCCTCAGTA-TTAATTACCTGATC-TCAACC-TG  895
      ||||||||||||||||||||||||| |||||||||||||| |||||| ||
seq2  AGAGTTAAGTCTGTTAGCCTCAGTATTTAATTACCTGATCTTCAACCTTG  900

seq1  GATC-TTGTAG-ACCTA-TGCAAGCTTTAGCTCATGT-AGACTGCAAGCC  941
      |||| |||||| ||||| ||||||||||||||||||| |||||||||| |
seq2  GATCTTTGTAGAACCTATTGCAAGCTTTAGCTCATGTAAGACTGCAAG-C  949

seq1  CTTGGCTGAACTAGTAG-ACTT-ATACAGTCCTCCACAGACTTATAAAAA  989
      ||||||||||||||||| |||| | |||||||| ||||||||||| ||||
seq2  CTTGGCTGAACTAGTAGAACTTAAAACAGTCCT-CACAGACTTATTAAAA  998

seq1  ACC-TTAAGTAATTACT-CATCAGCAAACC-AAATAATCCAAATTACCCA  1036
      ||| ||||||||||||| |||||||||||| ||||||||||||||| |||
seq2  ACCTTTAAGTAATTACTCCATCAGCAAACCTAAATAATCCAAATTAACCA  1048

seq1  ATTAAA-GAATGGGACAAA-GCTAAACAGACATTTATCTAGAGGAGAATC  1084
      |||||| |||||||||||| ||||||||||| ||||||| ||| ||||||
seq2  ATTAAAGGAATGGGACAAATGCTAAACAGACCTTTATCTTGAGAAGAATC  1098

seq1  TGAAATGGCTGGGAAGAGCTTAAAG-AAATGTTCAGCATCT  1124
      ||||||| |||| |||||||||||| |||||||||||||||
seq2  TGAAATGCCTGGAAAGAGCTTAAAGAAAATGTTCAGCATCT  1139