BAC Information

Click to search

BAC

Clone NameB6Ng01-127I04
Chromosome1 (Build37)14 (Build37)
Map Location 89,541,638 - 89,541,84671,328,768 - 71,329,772
singlet/doubletsingletsinglet
Overlap geneInpp5d
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I04.bB6Ng01-127I04.g
ACCDH929609DH929610
length1,088994
definitionDH929609|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I04, 5' end.DH929610|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,541,638 - 89,541,846)(71,328,768 - 71,329,772)
sequence
gaattctaccaggatttcaaagaagagtttacattaatactcctcaaatt
atcctacaaaatagaaacaagaaacactccccaactcattttacaaaacc
acatttactctgatacctgaaccacataaagatccaacaaagaaaaatta
cagatcaacttcctttatgaacacagatgtaaaaattctcaataaaatac
ttgcaaacagaatccaagaacacatcaaaaggatcatctaccatgatcaa
gtaggcttcatcccagagatgcagggacagttcaatatatgaaaatcaac
aaatgtaatccactttatatgcaaattgaaagaaaaaaaatcctacatga
tcatctcagtagatgcaaaagaagactttgacaaaatctaacaccccttc
atgataaaagccctgaagaaattagagataaaagagacataatttaatat
aataaaggcataaagaaagcctataaccaaaatcaacttaaatggagaga
agatcaaagcagctctattaaaatttggaacaagagccaggcgtggtagc
gcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctga
gttcttcgaggccagcctggtctacaaagtgagttccaggacagccaggg
ctacacagagaaaccctgtctcgaaaaaccaaaacaaaaaaacccaaaac
aacaacaacaacaacaacaacaacaacaacaacaacaacaaacggaagaa
gacaaggttgtccactgtaggtttagattttttaaaatatatttttaatt
aagggttttaaattttttaatatctttttagtctatcacctattagaggc
agcagaaaggaactacttgtaaatatcatttatgaatcagcaatggcagg
actcaaaacaccatttacgaacagcagttgagaaactgtaaggctctgcc
atttgcctgactcccgcagggatcaataatatcattagaagtttttagga
atgtttttctctatgagtcatgacaaatgatgactgataagacggtaggc
tactacaccaccctacgtcagcaaggctaatcagacag
gaattcctaaggatggaaactcctctcccaaagattcaatccccaaacat
ggttttccattgtccccatctacccagcttaattaacatacccaagaaag
agagggtcttcacttcctgtcccaaaccccccatgacatttgtcaccact
atcttcataagattcctacctgtgtgcccattctggaaggcagaaacctg
gaaaaggccaagccagaggaagggcacacaatgcctgcctgggcacagtg
cagagtcaaagtccaacttgatggtctccagatgacctttcaagccatct
ttaacctcacagagctgagattggcaccgacaggaccaccagggactgct
gggcagtgggtcaggggtcagatctgtgggagctacatagaagatagtac
cctcttttcttctaggcccatcctgggaagaccatgggtcgaaagccctt
gaggctggtcccaggagcctgaaaaccaactggaaagactttatcccaca
gatccaggcaataagataagatcccaagagatgtcatgaataagtgtctt
tgtttgatcggcatggaaaccaagagcccaggaaaagacagagcccactg
gatagctagtcagaagaccacacacaggtctccaacttggagtgaatgcc
atccaccacctgcctgtcattccacatctctgtctctgggttcttctcag
cacaagcttccccgcacacataaagctctgacttgagggccaagtcccat
gcagggaaattgactgtgcttctgacatccccccaactgctctgtcaaac
tcattcaagatgcaggggtttttcctcattccttcccttctttctctggg
aacccatgtgacatctgcatacaaaggagaatggtaatgggacaggcaaa
ggtgggctcagaacatcctggttggaaaaggaactccctaactcatcttg
gggccagatgaactccacccaagtctgacaaatcagccatgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89541638_89541846
seq2: B6Ng01-127I04.b_635_1137

seq1  CAGGCGGATTTCTGAG---TTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  47
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CAGGCGGATTTCTGAGTTCTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  50

seq1  CCAGGACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAAACCAAAAA  97
      |||||||||||| | ||| |||||||||||||||||||||||||||||| 
seq2  CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAC  100

seq1  AAAAAAAAAAAAAAAAAAAAAAATAGGACCTCTCTGCAGCAGCCAGTAAG  147
      |||||||   |||| || || || |  | |   |  || || | |  |  
seq2  AAAAAAACCCAAAACAACAACAACAACAAC-AACAACAACAACAACAACA  149

seq1  ACTCGAATGGCCTGGGATGATGCCAGGGTCGTGGAGCATCTGGAGCAAGG  197
      ||   ||       ||| || | || ||| ||    |  ||| ||     
seq2  ACAACAA-----ACGGAAGAAGACAAGGTTGT----CCACTGTAG-----  185

seq1  CTAATCAGACAG--------------------------------------  209
          | |||                                         
seq2  --GTTTAGATTTTTTAAAATATATTTTTAATTAAGGGTTTTAAATTTTTT  233

seq1  --------------------------------------------------  209
                                                        
seq2  AATATCTTTTTAGTCTATCACCTATTAGAGGCAGCAGAAAGGAACTACTT  283

seq1  --------------------------------------------------  209
                                                        
seq2  GTAAATATCATTTATGAATCAGCAATGGCAGGACTCAAAACACCATTTAC  333

seq1  --------------------------------------------------  209
                                                        
seq2  GAACAGCAGTTGAGAAACTGTAAGGCTCTGCCATTTGCCTGACTCCCGCA  383

seq1  --------------------------------------------------  209
                                                        
seq2  GGGATCAATAATATCATTAGAAGTTTTTAGGAATGTTTTTCTCTATGAGT  433

seq1  --------------------------------------------------  209
                                                        
seq2  CATGACAAATGATGACTGATAAGACGGTAGGCTACTACACCACCCTACGT  483

seq1  --------------------  209
                          
seq2  CAGCAAGGCTAATCAGACAG  503

seq1: chr14_71328768_71329772
seq2: B6Ng01-127I04.g_68_1061 (reverse)

seq1  GGACATGGCCTGATTTGTCAGACTTTGGGTAGGAAGTTCATCTTGCCCCC  50
      |||||||| |||||||||||||| ||||||  | |||||||| || ||||
seq2  GGACATGG-CTGATTTGTCAGAC-TTGGGT--GGAGTTCATC-TGGCCCC  45

seq1  AAGATGAGGTTATGCGAGTTCCCTTTTCCAACCAGGATGTTTCTTGAGCC  100
      ||||||| |||| | ||||| ||||||||||||||||||||   ||||||
seq2  AAGATGA-GTTA-GGGAGTT-CCTTTTCCAACCAGGATGTT--CTGAGCC  90

seq1  CACCTTTGCCTGTCCCATTACCA-TCTCCTCTAGTATGCAGATGTCACAT  149
      ||||||||||||||||||||||| |||||| | |||||||||||||||||
seq2  CACCTTTGCCTGTCCCATTACCATTCTCCT-TTGTATGCAGATGTCACAT  139

seq1  GGGCTCCCAGAGAAAGAAGGGAAGGAATGAGGAAAAAAACCCCTGCATCT  199
      ||| ||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GGGTTCCCAGAGAAAGAAGGGAAGGAATGAGG--AAAAACCCCTGCATCT  187

seq1  TGGATGAGTCTGACAGAGCAGTTGGGGGGATGTCAG-AGCACAGTCAATT  248
      || |||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TGAATGAGTTTGACAGAGCAGTTGGGGGGATGTCAGAAGCACAGTCAATT  237

seq1  TCCCTGCATGGGACTTGGCCCTCAAGTCAGAGCTTTATGTGTGCGGGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATGGGACTTGGCCCTCAAGTCAGAGCTTTATGTGTGCGGGGAA  287

seq1  GCTTGTGCTGAGAAGAACCCAGAGACAGAGATGTGGAATGACAGGCAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTGAGAAGAACCCAGAGACAGAGATGTGGAATGACAGGCAGGT  337

seq1  GGTGGATGGCATTCACTCCAAGTTGGAGACCTGTGTGTGGTCTTCTGACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATGGCATTCACTCCAAGTTGGAGACCTGTGTGTGGTCTTCTGACT  387

seq1  AGCTATCCAGTGGGCTCTGTCTTTTCCTGGGCTCTTGGTTTCCATGCCGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCAGTGGGCTCTGTCTTTTCCTGGGCTCTTGGTTTCCATGCCGA  437

seq1  TCAAACAAAGACACTTATTCATGACATCTCTTGGGATCTTATCTTATTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAAGACACTTATTCATGACATCTCTTGGGATCTTATCTTATTGC  487

seq1  CTGGATCTGTGGGATAAAGTCTTTCCAGTTGGTTTTCAGGCTCCTGGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTGTGGGATAAAGTCTTTCCAGTTGGTTTTCAGGCTCCTGGGAC  537

seq1  CAGCCTCAAGGGCTTTCGACCCATGGTCTTCCCAGGATGGGCCTAGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAAGGGCTTTCGACCCATGGTCTTCCCAGGATGGGCCTAGAAGA  587

seq1  AAAGAGGGTACTATCTTCTATGTAGCTCCCACAGATCTGACCCCTGACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGTACTATCTTCTATGTAGCTCCCACAGATCTGACCCCTGACCC  637

seq1  ACTGCCCAGCAGTCCCTGGTGGTCCTGTCGGTGCCAATCTCAGCTCTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAGCAGTCCCTGGTGGTCCTGTCGGTGCCAATCTCAGCTCTGTG  687

seq1  AGGTTAAAGATGGCTTGAAAGGTCATCTGGAGACCATCAAGTTGGACTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAGATGGCTTGAAAGGTCATCTGGAGACCATCAAGTTGGACTTT  737

seq1  GACTCTGCACTGTGCCCAGGCAGGCATTGTGTGCCCTTCCTCTGGCTTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCACTGTGCCCAGGCAGGCATTGTGTGCCCTTCCTCTGGCTTGG  787

seq1  CCTTTTCCAGGTTTCTGCCTTCCAGAATGGGCACACAGGTAGGAATCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCAGGTTTCTGCCTTCCAGAATGGGCACACAGGTAGGAATCTTA  837

seq1  TGAAGATAGTGGTGACAAATGTCATGGGGGGTTTGGGACAGGAAGTGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAGTGGTGACAAATGTCATGGGGGGTTTGGGACAGGAAGTGAAG  887

seq1  ACCCTCTCTTTCTTGGGTATGTTAATTAAGCTGGGTAGATGGGGACAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTTTCTTGGGTATGTTAATTAAGCTGGGTAGATGGGGACAATG  937

seq1  GAAAACCATGTTTGGGGATTGAATCTTTGGGAGAGGAGTTTCCATCCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCATGTTTGGGGATTGAATCTTTGGGAGAGGAGTTTCCATCCTTA  987

seq1  GGAATTC  1005
      |||||||
seq2  GGAATTC  994