BAC Information

Click to search

BAC

Clone NameB6Ng01-127I23
Chromosome14 (Build37)
Map Location 57,685,465 - 57,815,607
singlet/doubletdoublet
Overlap geneGjb2, LOC100043515, Gjb6
Upstream geneMcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3
Downstream geneLOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I23.bB6Ng01-127I23.g
ACCDH929645DH929646
length1,021920
definitionDH929645|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I23, 5' end.DH929646|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,814,585 - 57,815,607)(57,685,465 - 57,686,378)
sequence
gaattccaaacataaactatctgcagctgacaaaactcacacccctccta
gagcaggagacaatcatagttagcagctgtggacagtctgaggcagcacc
acatcccacatctgggattaaaacaaaaacatagtcacataatattactg
agtttctaaagaaaccaaaattctcactacatgtaagtatgtgtgtgagt
acaagaaccttcagaagagtgtaccaggtcctttggggctggacttacag
atggttgtgagccactgacacactgagaaccaaatctgggtcctgtgtta
gaggcctgcctgctcttaaccactgagccatctctctagaccacttactg
ctttgattacacagcctttttttctcctctttctacccatcaggctatgt
taaagtctgtgtttctagagtgtatctatttgtataatcctttttacatc
aatatattcacttacattgctgtgagttttggatttgtagctgtggtttt
aatatgctgcatatgatttgcttctctacttttaaatttattctttgttt
cttgccttattttaggcccataagatgccttttaagattctattataatc
tcccagtcatgtttttccagtagttattgcagttgataataggtatctat
ttagaataagtgttgtcccatcttgcaaataaggaagagtcttgtgagtg
aaatctccctccattctttgttctagttcatctatcttttcgtttattta
ctcatttccatatataaatatgcatgacatctttaagttctcagtcttca
gcttcccatctacttattccaacatctggattgtctagaggcttgtttct
attacctgttgttttccttgattacgggtcacagaccccacttttcacaa
gtctataatctctctgttcacattatgggcggtgttttgtatggacaagt
catctgttattagaggctgttgaggactctcttgtgtggttttatttttg
ttagggtgggtctgttttggt
gaattcacttctgttcagacctgaatttaacccattccaaagagaaagaa
agcactgaagctctaaaggtttgtgaagcctgtcccctctggaactcgga
gctgcagatgtgtactgtgtccgggttgtgcgacttggggtttttgtttt
taattttaagagagtcccaagtttctcagtctggctttcactgactattc
tgatctttccgtcctcaccccctgagtgctgtgattacaggcctgcacac
catcatggctggcaggctttaaggacttcagcgtctgtcttagccagtgt
tctattgctgtaaagagacactatgaccacagcatctctataaaacacta
acttgggactggcttacagttgagaggtttagtccattttcattatagag
agaagcaaggtggcatgcagacaggcatgatgctggggaagtagtggaga
gttctacatccagatttgcaggcagcaggaagagagggactctgggcttg
gcttaggcatttgaaacctcaaagcccaccccagtgacacatttacgcca
atacggccacacctactaattctttcaaatagtgccatttcctagtgacc
cactattcaaatctatggactctgtgggttcatttttattcaaaccacca
cagtgcctgtggtggtttgaatggtgtggtcactgtctagcctcttccct
ctgggggcatcagaacttttttgtttgacaaaccaaggaggagtggaagc
agagctggggaacaaatatggttccacaaggactcccgtgtagttgggaa
tgccagaagtgtttacagcataggtggcctgcacagcaggtagctggggt
cccatggtctttcgatatgaacagtagcagcacatagggggggtcaagct
gccatcctgagtgtgagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57814585_57815607
seq2: B6Ng01-127I23.b_51_1071 (reverse)

seq1  ACCAAAACAGACCCACCCTAAC-AAAATAAAACCACACAAGAGAGGTCCT  49
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  ACCAAAACAGACCCACCCTAACAAAAATAAAACCACACAAGAGA-GTCCT  49

seq1  CAACAGCCTCTAATAACAGATGACCTTGTCCATACAAAACACCGCCCATA  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAACAGCCTCTAATAACAGATGA-CTTGTCCATACAAAACACCGCCCATA  98

seq1  ATGTGGAACAGAGAGATTATAGACTTGTGAAAAGTGGGGTCTGTGACCCG  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGT-GAACAGAGAGATTATAGACTTGTGAAAAGTGGGGTCTGTGACCCG  147

seq1  TAATCAAGGAAAACAACAGGTAATAGAAACAAGCCTCTAGACAATCCAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGGAAAACAACAGGTAATAGAAACAAGCCTCTAGACAATCCAGA  197

seq1  TGTTGGAATAAGTAGATGGGAAGCTGAAGACTGAGAACTTAAAGATGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAATAAGTAGATGGGAAGCTGAAGACTGAGAACTTAAAGATGTCA  247

seq1  TGCATATTTATATATGGAAATGAGTAAATAAACGAAAAGATAGATGAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTTATATATGGAAATGAGTAAATAAACGAAAAGATAGATGAACT  297

seq1  AGAACAAAGAATGGAGGGAGATTTCACTCACAAGACTCTTCCTTATTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGAATGGAGGGAGATTTCACTCACAAGACTCTTCCTTATTTGC  347

seq1  AAGATGGGACAACACTTATTCTAAATAGATACCTATTATCAACTGCAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGACAACACTTATTCTAAATAGATACCTATTATCAACTGCAATA  397

seq1  ACTACTGGAAAAACATGACTGGGAGATTATAATAGAATCTTAAAAGGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGGAAAAACATGACTGGGAGATTATAATAGAATCTTAAAAGGCAT  447

seq1  CTTATGGGCCTAAAATAAGGCAAGAAACAAAGAATAAATTTAAAAGTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGGCCTAAAATAAGGCAAGAAACAAAGAATAAATTTAAAAGTAGA  497

seq1  GAAGCAAATCATATGCAGCATATTAAAACCACAGCTACAAATCCAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAATCATATGCAGCATATTAAAACCACAGCTACAAATCCAAAACT  547

seq1  CACAGCAATGTAAGTGAATATATTGATGTAAAAAGGATTATACAAATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATGTAAGTGAATATATTGATGTAAAAAGGATTATACAAATAGA  597

seq1  TACACTCTAGAAACACAGACTTTAACATAGCCTGATGGGTAGAAAGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTAGAAACACAGACTTTAACATAGCCTGATGGGTAGAAAGAGGA  647

seq1  GAAAAAAAGGCTGTGTAATCAAAGCAGTAAGTGGTCTAGAGAGATGGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGGCTGTGTAATCAAAGCAGTAAGTGGTCTAGAGAGATGGCTC  697

seq1  AGTGGTTAAGAGCAGGCAGGCCTCTAACACAGGACCCAGATTTGGTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCAGGCAGGCCTCTAACACAGGACCCAGATTTGGTTCTC  747

seq1  AGTGTGTCAGTGGCTCACAACCATCTGTAAGTCCAGCCCCAAAGGACCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCAGTGGCTCACAACCATCTGTAAGTCCAGCCCCAAAGGACCTG  797

seq1  GTACACTCTTCTGAAGGTTCTTGTACTCACACACATACTTACATGTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTCTTCTGAAGGTTCTTGTACTCACACACATACTTACATGTAGTG  847

seq1  AGAATTTTGGTTTCTTTAGAAACTCAGTAATATTATGTGACTATGTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGGTTTCTTTAGAAACTCAGTAATATTATGTGACTATGTTTTT  897

seq1  GTTTTAATCCCAGATGTGGGATGTGGTGCTGCCTCAGACTGTCCACAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATCCCAGATGTGGGATGTGGTGCTGCCTCAGACTGTCCACAGCT  947

seq1  GCTAACTATGATTGTCTCCTGCTCTAGGAGGGGTGTGAGTTTTGTCAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTATGATTGTCTCCTGCTCTAGGAGGGGTGTGAGTTTTGTCAGCT  997

seq1  GCAGATAGTTTATGTTTGGAATTC  1023
      ||||||||||||||||||||||||
seq2  GCAGATAGTTTATGTTTGGAATTC  1021

seq1: chr14_57685465_57686378
seq2: B6Ng01-127I23.g_68_987

seq1  GAATTCACTTCTGTTCAGACCTGAATTTAACCCATTCCAAAGAGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTGTTCAGACCTGAATTTAACCCATTCCAAAGAGAAAGAA  50

seq1  AGCACTGAAGCTCTAAAGGTTTGTGAAGCCTGTCCCCTCTGGAACTCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAAGCTCTAAAGGTTTGTGAAGCCTGTCCCCTCTGGAACTCGGA  100

seq1  GCTGCAGATGTGTACTGTGTCCGGGTTGTGCGACTTGGGGTTTTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGATGTGTACTGTGTCCGGGTTGTGCGACTTGGGGTTTTTGTTTT  150

seq1  TAATTTTAAGAGAGTCCCAAGTTTCTCAGTCTGGCTTTCACTGACTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAGAGAGTCCCAAGTTTCTCAGTCTGGCTTTCACTGACTATTC  200

seq1  TGATCTTTCCGTCCTCACCCCCTGAGTGCTGTGATTACAGGCCTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCCGTCCTCACCCCCTGAGTGCTGTGATTACAGGCCTGCACAC  250

seq1  CATCATGGCTGGCAGGCTTTAAGGACTTCAGCGTCTGTCTTAGCCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGCTGGCAGGCTTTAAGGACTTCAGCGTCTGTCTTAGCCAGTGT  300

seq1  TCTATTGCTGTAAAGAGACACTATGACCACAGCATCTCTATAAAACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTGTAAAGAGACACTATGACCACAGCATCTCTATAAAACACTA  350

seq1  ACTTGGGACTGGCTTACAGTTGAGAGGTTTAGTCCATTTTCATTATAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGACTGGCTTACAGTTGAGAGGTTTAGTCCATTTTCATTATAGAG  400

seq1  AGAAGCAAGGTGGCATGCAGACAGGCATGATGCTGGGGAAGTAGTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGGTGGCATGCAGACAGGCATGATGCTGGGGAAGTAGTGGAGA  450

seq1  GTTCTACATCCAGATTTGCAGGCAGCAGGAAGAGAGGGACTCTGGGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACATCCAGATTTGCAGGCAGCAGGAAGAGAGGGACTCTGGGCTTG  500

seq1  GCTTAGGCATTTGAAACCTCAAAGCCCACCCCAGTGACACATTTACGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGCATTTGAAACCTCAAAGCCCACCCCAGTGACACATTTACGCCA  550

seq1  ATACGGCCACACCTACTAATTCTTTCAAATAGTGCCATTTCCTAGTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGCCACACCTACTAATTCTTTCAAATAGTGCCATTTCCTAGTGACC  600

seq1  CACTATTCAAATCTATGGACTCTGTGGGGTTCATTTTTATTCAAACCACC  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTATTCAAATCTATGGACTCTGT-GGGTTCATTTTTATTCAAACCACC  649

seq1  ACAGTGCCTGTGGTGGTTTGAATGGTGTGGTCCACTGTCTAGCCTCTTCC  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTGCCTGTGGTGGTTTGAATGGTGTGGT-CACTGTCTAGCCTCTTCC  698

seq1  CTCT-GGGGCATCAG-ACATTTTTGTTTGACAGACCAAGGAGGAGT-GAA  747
      |||| |||||||||| || ||||||||||||| ||||||||||||| |||
seq2  CTCTGGGGGCATCAGAACTTTTTTGTTTGACAAACCAAGGAGGAGTGGAA  748

seq1  GCAGAGCTGGGG-ACAAATA-GGTTCCAC-AGGACTCCCGTGTAGTTGGG  794
      |||||||||||| ||||||| |||||||| ||||||||||||||||||||
seq2  GCAGAGCTGGGGAACAAATATGGTTCCACAAGGACTCCCGTGTAGTTGGG  798

seq1  AATGCCAGGAGTG-TTACAGCAATGGTGGCCTGCACCAGCAGGTAGCTGG  843
      |||||||| |||| ||||||||  ||||||||||| ||||||||||||||
seq2  AATGCCAGAAGTGTTTACAGCATAGGTGGCCTGCA-CAGCAGGTAGCTGG  847

seq1  GGTCCCA-GGTCTTTCGATAGTAACAGTAGCAGCAGCATAGGTGGGGTC-  891
      ||||||| ||||||||||||  ||||||||||||| |||||| |||||| 
seq2  GGTCCCATGGTCTTTCGATATGAACAGTAGCAGCA-CATAGGGGGGGTCA  896

seq1  AGCTGCCATCCTGA-TGTGAGCCC  914
      |||||||||||||| |||||||||
seq2  AGCTGCCATCCTGAGTGTGAGCCC  920