BAC Information

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BAC

Clone NameB6Ng01-128L19
Chromosome14 (Build37)
Map Location 44,072,007 - 44,194,143
singlet/doubletdoublet
Overlap geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342
Upstream geneLOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380
Downstream geneLOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L19.bB6Ng01-128L19.g
ACCDH930508DH930509
length1,1281,033
definitionDH930508|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L19, 5' end.DH930509|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,193,003 - 44,194,143)(44,072,007 - 44,073,042)
sequence
gaattctttttatagtgaggaattattctgtaatcctatggttcccatta
ccttttacagagaagaaaggggacagaagtaattgaagctcatgggtatt
taaaatctatactcaattaggttagggaggggagctgggaaactgataag
ataacaatcaataaagctagggtcaggaggccattcaggtgtgaatttat
atttctgagtgacttttctactcttttttataatttatttttattcattt
tctaatcagaattacaaatagggacaaaaccaacaaagaatgtttcatga
cacatgaagcaaaaataaaagcaactatatgaaacaccaggaaaaaatac
atataccacctatcaaagacaaaaaaacagatccccttaagatagaagga
acacagaagtcaaggaaattctggcatcccagtgcaaaatcaaggttgag
aaagaggggatgacccaaatctgctgaaagagatgtatgcctctaagaca
cactgtcacactcctgagaaagaaatgcgtatggtcaaattctcttagct
accagaatgacaggaatcttcgtctccaccagacatatttcagtgggcct
gtggttattccacatgactgaatcaagcatacacacaccacaggattgct
aagtactgccacttatgaaaaacatccataattgtttaaataacataatc
atctattctctacccatgagctgagtttcctaataatattttcaccacta
atcttcagctaaatcaactagggaatgtccccatgataaaacacacttga
cgtctgtctgtactgccaagctgtattaaatgcaaacgacataggcataa
tgtaagtatttatgttgctctgtatctgaattaaaaaaaatgagaagagc
tctcgaagtaaggaagagtaaaagtgttcacctgaagacattgtgcaagc
caagattactgggagagcaaaatctctcatcatgtacctctttacataat
cataataacattgaaatatataaatatatatcaatagactttctactctt
aacagaatactggctgacacttgctaatatttcacaactgaaattcctca
acacaggcatttaagctgaattctctgc
gaattcagatatgtgctgaggcacatcaagacctactggggaaataggaa
gattctgagagtaaatttttcttgtcctgataggtcatcaaggaaaatta
caaaatcattctacaaaattgcaaaggttttgagccaaagtctgtaacat
gttttctgcttagtcttgggtgtccatatttttcaaacccatactccaaa
aaaggagacctacttacattcctcttgtaaagattgttaccagaagtaac
ttattttctactgtgttgccaaagacagccatgggctgtaagtctgtgct
gctaaatgacagccaaagaaggctctttagcacaatttttgtttttagat
tttggtttgagcttggattacttttgttatttggttttctttagtttcat
tagaagttttttgtttgtttctttgctgttgttttgttttgtaattgatt
taatgttttgataaggctatacagtatatatattgactacccacttttag
ttactattgagtaaattggatgtattctaagaataaaacagtgatctcca
actcttcactctaagaaacttctttattcagctatggtatcaccctattg
aaatctcacacctatcagacaaagatggatctgtgtatggggcttgggtt
ccataatgacttcccagccagactgagctacaaaagtaatagattgtaca
ttcagtgtggatagtgtgtccaactatgtggataacgacttcatgatgga
aaagttatccatgctgtatccttgcatgtcaaatatttagctgctgctaa
aatactgtgaatgacagtgttgaacaaatcaatgggaaatatatcagtat
tttctgaaatgtctttcatgaaataaaacaaattctaagggaatataaaa
gctggtagaaaacacagacatgtatgcttctgatttcttcaaatgttcta
tcagtggtaaatactactacagatattcaattttaggaccttttgagata
gggatgtattatttttcggttattttgtgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44193003_44194143
seq2: B6Ng01-128L19.b_48_1175 (reverse)

seq1  GCAGAGAAATCAACTTAAATGCCCTATG-GTTGAGGAATGTCAGTTGGTG  49
      |||||||| ||| ||||||||||   || |||||||||| |||||||   
seq2  GCAGAGAATTCAGCTTAAATGCC---TGTGTTGAGGAATTTCAGTTG--T  45

seq1  GAAATATTTAGGCAAGTGTCAGCCAGTATTCTGTTAAGAGTAGAAAAGTC  99
      ||||||||   |||||||||||||||||||||||||||||||| ||||||
seq2  GAAATATT--AGCAAGTGTCAGCCAGTATTCTGTTAAGAGTAG-AAAGTC  92

seq1  TTATTGATATATATTTATATAATTTCAATGTTATTATGATTATGTAAGGA  149
       ||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  -TATTGATATATATTTATAT-ATTTCAATGTTATTATGATTATGTAAAGA  140

seq1  GGTACATGATGAGAGATTTTGCCTCTCCCAGTAAATCTTGGCTTGCACAA  199
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GGTACATGATGAGAGATTTTG-CTCTCCCAGT-AATCTTGGCTTGCACAA  188

seq1  TGTCTTCAGGTGAACATTTTTACTCTTCTTTACTTCGAGAGCTCTTCTCA  249
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TGTCTTCAGGTGAACACTTTTACTCTTCCTTACTTCGAGAGCTCTTCTCA  238

seq1  TTTTTTTTTAAATTCAGATACAGAGCAGCATAAATACTTACATTATGCCT  299
      ||||||||  ||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTTTT--AATTCAGATACAGAGCAACATAAATACTTACATTATGCCT  286

seq1  ATGTCGTTTGCATTTAATACAGCTTGGCAGTAGAGACAGACGTCAAGTGT  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGTCGTTTGCATTTAATACAGCTTGGCAGTACAGACAGACGTCAAGTGT  336

seq1  GTTTTATCATGGGGACATTCCCTAGTTGATTTAGCTGAAGATTAGTGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCATGGGGACATTCCCTAGTTGATTTAGCTGAAGATTAGTGGTG  386

seq1  AAAATATTATTAGGAAACTCAGCTCATGGGTAGAGAATAGATGATTATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTAGGAAACTCAGCTCATGGGTAGAGAATAGATGATTATGT  436

seq1  TATTTAAACAATTATGGATGTTTTTCATAAGTGGCACTACTTAGCAATCC  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTTAAACAATTATGGATGTTTTTCATAAGTGGCAGTACTTAGCAATCC  486

seq1  TGTGGTATGTGTATGCTTGATTCAGTAATGTGGAATAACCACAGGCCCAC  549
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTGGTGTGTGTATGCTTGATTCAGTCATGTGGAATAACCACAGGCCCAC  536

seq1  TGAAATATGTCTGGTGGAGACGAAGATTCCTGTCATTCTGGTAGCTAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGTCTGGTGGAGACGAAGATTCCTGTCATTCTGGTAGCTAAGA  586

seq1  GAATTTGACCATATGCATTTCTTTCTCAGGAGTGTGACAGTGTGTCTAAG  649
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GAATTTGACCATACGCATTTCTTTCTCAGGAGTGTGACAGTGTGTCTTAG  636

seq1  AGGCATACTTCTCTTTCAGCAGATTTGGGTCATCCCCTCCTTCTCAACCT  699
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCATACATCTCTTTCAGCAGATTTGGGTCATCCCCTCTTTCTCAACCT  686

seq1  TGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTCCTTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCACTGGGATGCCAGAATTTCCTTGACTTCTGTGTTCCTTCTA  736

seq1  TCTTAAAGGGATCAGTTTTTTTGTCTTTGATAGGAGGTATATGTA-TTTT  798
      |||||| |||||| |||||||||||||||||||| |||||||||| ||||
seq2  TCTTAAGGGGATCTGTTTTTTTGTCTTTGATAGGTGGTATATGTATTTTT  786

seq1  TCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCATGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTTTCATATAGTTGCTTTTATTTTTGCTTCATGTGTCATGAAA  836

seq1  CATTCTTTGTTGGTTTTCTCCCTATTTGTATTTCTGATTAGAAAATGAAT  898
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CATTCTTTGTTGGTTTTGTCCCTATTTGTAATTCTGATTAGAAAATGAAT  886

seq1  AAAAATAAATTATAAAAAAAGAGTAGAAAAGTCACTCAGAAATATAAATT  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATTAT-AAAAAAGAGTAGAAAAGTCACTCAGAAATATAAATT  935

seq1  CACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCTCATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACACCTGAATGGCCTCCTGACCCTAGCTTTATTGATTGTTATCTTATCA  985

seq1  GTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAATACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGCTCCCCTCCCTAACCTAATTGAGTATAGATTTTAAATACCC  1035

seq1  ATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTAATGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTCAATTACTTCTGTCCCCTTTCTTCTCTGTAAAAGGTAATGGG  1085

seq1  ACTCATAAGATTACAGAACAATTCCTCACTATAAAAAGAATTC  1141
      |  |||| |||||||||| ||||||||||||||||||||||||
seq2  AACCATAGGATTACAGAATAATTCCTCACTATAAAAAGAATTC  1128

seq1: chr14_44072007_44073042
seq2: B6Ng01-128L19.g_67_1099

seq1  GAATTCAGATATGTGCTGAGGCACATCAAGACCTACTGGGGAAATAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATGTGCTGAGGCACATCAAGACCTACTGGGGAAATAGGAA  50

seq1  GATTCTGAGAGTAAATTTTTCTTGTCCTGATAGGTCATCAAGGAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAGAGTAAATTTTTCTTGTCCTGATAGGTCATCAAGGAAAATTA  100

seq1  CAAAATCATTCTACAAAATTGCAAAGGTTTTGAGCCAAAGTCTGTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATTCTACAAAATTGCAAAGGTTTTGAGCCAAAGTCTGTAACAT  150

seq1  GTTTTCTGCTTAGTCTTGGGTGTCCATATTTTTCAAACCCATACTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCTTAGTCTTGGGTGTCCATATTTTTCAAACCCATACTCCAAA  200

seq1  AAAGGAGACCTACTTACATTCCTCTTGTAAAGATTGTTACCAGAAGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGACCTACTTACATTCCTCTTGTAAAGATTGTTACCAGAAGTAAC  250

seq1  TTATTTTCTACTGTGTTGCCAAAGACAGCCATGGGCTGTAAGTCTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTACTGTGTTGCCAAAGACAGCCATGGGCTGTAAGTCTGTGCT  300

seq1  GCTAAATGACAGCCAAAGAAGGCTCTTTAGCACAATTTTTGTTTTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGACAGCCAAAGAAGGCTCTTTAGCACAATTTTTGTTTTTAGAT  350

seq1  TTTGGTTTGAGCTTGGATTACTTTTGTTATTTGGTTTTCTTTAGTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGAGCTTGGATTACTTTTGTTATTTGGTTTTCTTTAGTTTCAT  400

seq1  TAGAAGTTTTTTGTTTGTTTCTTTGCTGTTGTTTTGTTTTGTAATTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTTTTGTTTGTTTCTTTGCTGTTGTTTTGTTTTGTAATTGATT  450

seq1  TAATGTTTTGATAAGGCTATACAGTATATATATTGACTACCCACTTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTGATAAGGCTATACAGTATATATATTGACTACCCACTTTTAG  500

seq1  TTACTATTGAGTAAATTGGATGTATTCTAAGAATAAAACAGTGATCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGAGTAAATTGGATGTATTCTAAGAATAAAACAGTGATCTCCA  550

seq1  ACTCTTCACTCTAAGAAACTTCTTTATTCAGCTATGGTATCACCCTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCACTCTAAGAAACTTCTTTATTCAGCTATGGTATCACCCTATTG  600

seq1  AAATCTCACACCTATCAGACAAAGATGGATCTGTGTATGGGGCTTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACACCTATCAGACAAAGATGGATCTGTGTATGGGGCTTGGGTT  650

seq1  CCATAATGACTTCCCAGCCAGACTGAGCTACAAAAGTAATAGATTGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGACTTCCCAGCCAGACTGAGCTACAAAAGTAATAGATTGTACA  700

seq1  TTCAGTGTGGATAGTGTGTCCAACTATGTGGATAACGACTTCATGATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGGATAGTGTGTCCAACTATGTGGATAACGACTTCATGATGGA  750

seq1  AAAGTTATCCATGCTGTATCCTTGCATGTCAAATATTTAGCTGCTGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATCCATGCTGTATCCTTGCATGTCAAATATTTAGCTGCTGCTAA  800

seq1  AATACTGTGAATGACAGTGTTGAACAAATCAATGGGAAATATATCAGTA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATACTGTGAATGACAGTGTTGAACAAATCAATGGGAAATATATCAGTAT  850

seq1  TTTCTGAAATGTCTTTCAGGAAATAAAAACAAATTCTAAGGGAATATAAA  899
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTTCTGAAATGTCTTTCATGAAAT-AAAACAAATTCTAAGGGAATATAAA  899

seq1  AGCTGGTAGAAAACACAGACATGTATGCTTCTGATTTCCTTCAAATGTTC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTGGTAGAAAACACAGACATGTATGCTTCTGATTT-CTTCAAATGTTC  948

seq1  TATCAGTGGTAAATACTACTACAGATATTCAATTTTAGGACCTTTTGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGGTAAATACTACTACAGATATTCAATTTTAGGACCTTTTGAGA  998

seq1  TAGGGATGTATTATTTTTTTGGTTATTTTGTTGTTTT  1036
      ||||||||||||| ||||| |||||||||| ||||||
seq2  TAGGGATGTATTA-TTTTTCGGTTATTTTG-TGTTTT  1033