BAC Information

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BAC

Clone NameB6Ng01-128M06
Chromosome14 (Build37)
Map Location 61,719,326 - 61,860,407
singlet/doubletdoublet
Overlap geneSacs, Sgcg
Upstream geneLOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19
Downstream geneArl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M06.bB6Ng01-128M06.g
ACCDH930530DH930531
length1,0201,090
definitionDH930530|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M06, 5' end.DH930531|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,719,326 - 61,720,191)(61,859,291 - 61,860,407)
sequence
gaattcacaaaatacccattacagttaaatcataattatgtttaacatgt
atgaagaatataagaccaataaataaaaaccagttgaaattacactatca
atgaaaactctttaaaatgaaatttaaaagactattttatttaaaaatat
attaaaagggattaaatacttaggaataaacttaacagaaggagtataaa
actggtacaaactacaaactacaaaatatgcctgaaagaaattaaagaaa
tcctaaggcctcatgctcacatgtcagaaagaagagtttatatggtaaga
ggggaattggcccatctgacaaatctaggctgtcccatgacagctatgaa
gcctctgcaagctgccaataacgcttgagatgtcacacttttcagtttca
aattttactgcaaagttgcagtcatcaagacagtgtggtacagtgatgac
cagagacgtccagacagtgggccacggtggcagtctagaaatacacttct
gcatccatggacaagtgactgacagaaacaccatgttcactaagtggggc
aaagtcatcgaaccgccagtgagctggagaattgaacatcccaaaccaga
gaatgagctactcgacaccattttaaaacaccaatgcaaaatgggtaaga
cctacactgaagaaatccaggtacaaggtttctaaaagaaaacacatgca
gggatttatgatttcgttactgtttcttcaatacgatttcaaacaagtac
ccaaaccaaaattgtcgacttggactttgtcagcatcagacatcttttgt
gcactaggaagaaagcaggctctgggaaaagaaagaccacaagatgaaca
aaataccctcaaggcatccatctgatgggcatcttttatccagaacatgt
gcagatctctcacagtccacacgcaaaggacgcacgtaaatccctctact
tgtgtgacttgtctttatttttttaatgagcaatgattacattaccattt
tctcaaaagaacacatatga
gaattcttgggtggaaggcatgacaggagggcaggggtgaggatgactct
gggatgaccatcgcccagctgtgcttcagaacatggaaatcacatatagg
ctgctacatgggcctgtactatggtccctccagggctacccacactgaag
gaagaagtggtccagtgtggctgagaatgcacagggaatgaagttaagta
atcccagatggttttacagcacggtggtcgccatgatctcagcggcattg
tctttggtttaccggcccttttgtgactgcagacttggggaacacagccc
ctggaacacaaacttctctcttcctgaaagtgcttctcagttaaagttct
ccaataagtatttatttcatcaagaacacagtgaacatgcagtcttaaaa
gggtgtttaggatgtcttaagagataatgaatcctaactgtgcttgtggt
tcgtgtacgtacatgcatttgtgggctgaaacttcaagaattgtatgccc
cagaagagtccattttactatatctttatttaaaaattaaaaagcagggt
caaggtatcaggtccagcacagcttggtcctggaagcctgactagggtgg
tgagggaatgaagactgatagacaggtgtccagaaaagctggggtggatg
ggctgtgctctatctgctggagcagcaccaattacaccacacccccttca
gtaggctccttatgcactgcactggggaggtgtcatcttgtccctgtaag
aggtctcagtaaggtagtggccacaatcaatcaatcactcactcactcac
tcactcaatcaatcaatcactcaatcatcaatgttcttaaagttaaccat
tacagtaaggtttatttttaatatggtcatgggtcttaggtgttattata
aaatgatttgttaaatctacacacatctctcaaatagactttgtcttaca
aaaagtttttaaaatagaatttgatataaacactcagttcaatattttag
gagaaatcgaaaattggaagatgctgagatgcattgtgtaattttgtatt
gaaaaaagcaaaaataatcaatggaacttcctgtctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_61719326_61720191
seq2: B6Ng01-128M06.b_48_913

seq1  GAATTCACAAAATACCCATTACAGTTAAATCATAATTATGTTTAACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAATACCCATTACAGTTAAATCATAATTATGTTTAACATGT  50

seq1  ATGAAGAATATAAGACCAATAAATAAAAACCAGTTGAAATTACACTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATATAAGACCAATAAATAAAAACCAGTTGAAATTACACTATCA  100

seq1  ATGAAAACTCTTTAAAATGAAATTTAAAAGACTATTTTATTTAAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTCTTTAAAATGAAATTTAAAAGACTATTTTATTTAAAAATAT  150

seq1  ATTAAAAGGGATTAAATACTTAGGAATAAACTTAACAGAAGGAGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGGATTAAATACTTAGGAATAAACTTAACAGAAGGAGTATAAA  200

seq1  ACTGGTACAAACTACAAACTACAAAATATGCCTGAAAGAAATTAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTACAAACTACAAACTACAAAATATGCCTGAAAGAAATTAAAGAAA  250

seq1  TCCTAAGGCCTCATGCTCACATGTCAGAAAGAAGAGTTTATATGGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGCCTCATGCTCACATGTCAGAAAGAAGAGTTTATATGGTAAGA  300

seq1  GGGGAATTGGCCCATCTGACAAATCTAGGCTGTCCCATGACAGCTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTGGCCCATCTGACAAATCTAGGCTGTCCCATGACAGCTATGAA  350

seq1  GCCTCTGCAAGCTGCCAATAACGCTTGAGATGTCACACTTTTCAGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCAAGCTGCCAATAACGCTTGAGATGTCACACTTTTCAGTTTCA  400

seq1  AATTTTACTGCAAAGTTGCAGTCATCAAGACAGTGTGGTACAGTGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTGCAAAGTTGCAGTCATCAAGACAGTGTGGTACAGTGATGAC  450

seq1  CAGAGACGTCCAGACAGTGGGCCACGGTGGCAGTCTAGAAATACACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGTCCAGACAGTGGGCCACGGTGGCAGTCTAGAAATACACTTCT  500

seq1  GCATCCATGGACAAGTGACTGACAGAAACACCATGTTCACTAAGTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATGGACAAGTGACTGACAGAAACACCATGTTCACTAAGTGGGGC  550

seq1  AAAGTCATCGAACCGCCAGTGAGCTGGAGAATTGAACATCCCAAACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCGAACCGCCAGTGAGCTGGAGAATTGAACATCCCAAACCAGA  600

seq1  GAATGAGCTACTCGACACCATTTTAAAACACCAATGCAAAATGGGTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCTACTCGACACCATTTTAAAACACCAATGCAAAATGGGTAAGA  650

seq1  CCTACACTGAAGAAATCCAGGTACAAGGTTTCTAAAAGAAAACACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGAAGAAATCCAGGTACAAGGTTTCTAAAAGAAAACACATGCA  700

seq1  GGGATTTATGATTTCGTTACTGTTTCTTCAATACGATTTCAAACAAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTATGATTTCGTTACTGTTTCTTCAATACGATTTCAAACAAGTAC  750

seq1  CCAAACCAAAATTGTCGACTTGGACTTTGTCAGCATCAGACATCTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAAATTGTCGACTTGGACTTTGTCAGCATCAGACATCTTTTGT  800

seq1  GCACTAGGAAGAAAGCAGGCTCTGGGAAAAGAAAGACCACAAGATGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGAAGAAAGCAGGCTCTGGGAAAAGAAAGACCACAAGATGAACA  850

seq1  AAATACCCTCAAGGCA  866
      ||||||||||||||||
seq2  AAATACCCTCAAGGCA  866

seq1: chr14_61859291_61860407
seq2: B6Ng01-128M06.g_68_1157 (reverse)

seq1  AAAGAGACAGGAAGTTCCCATTGATTTATTTTTTTGCTTCTTTTCAATTA  50
      |||||||||||||||| ||||||||   | ||||||||| ||||||||  
seq2  AAAGAGACAGGAAGTT-CCATTGAT---TATTTTTGCTT-TTTTCAAT--  43

seq1  ACTAAAATTACAC-ATGCATCTTCATACATTCCTTCCATTTTTCTGTATT  99
      || |||||||||| ||||||| |||  |||  |||||| |||||   |||
seq2  AC-AAAATTACACAATGCATC-TCA-GCAT--CTTCCAATTTTC--GATT  86

seq1  TCTCCTAAATATTTGAAACTTGAGTTGTTTATATTCAATGTCTATTTTTT  149
      |||||||||   |||||   |||| |||||||| ||||  ||||||||  
seq2  TCTCCTAAAATATTGAA--CTGAG-TGTTTATA-TCAAATTCTATTTT--  130

seq1  AAAAACCTTTTTGTAAGGACAAAGGTCTATTTGAGAGATGTGTGTAAGAT  199
       |||| |||||||||| |||||| ||||||||||||||||||||| ||||
seq2  -AAAAACTTTTTGTAA-GACAAA-GTCTATTTGAGAGATGTGTGT-AGAT  176

seq1  TTAACAAATCATTTTATAATAAACACCTAAGACCCATGACCATATTAAAA  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAACAAATCATTTTATAAT-AACACCTAAGACCCATGACCATATTAAAA  225

seq1  AATAAAACCTTACTGTAATGGTTTAACTTTAAGAACATTGATGATTGAGT  299
      |   ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  A--TAAACCTTACTGTAATGG-TTAACTTTAAGAACATTGATGATTGAGT  272

seq1  GATTGATTGATTGAGTGAGTGAGTGAGTGAGTGATTGATTGATTGTGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTGATTGAGTGAGTGAGTGAGTGAGTGATTGATTGATTGTGGCC  322

seq1  ACTACCTTACTGAGACCTCTTACAGGGACAAGATGACACCTCCCCAGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTACTGAGACCTCTTACAGGGACAAGATGACACCTCCCCAGTGC  372

seq1  AGTGCATAAGGAGCCTACTGAAGGGGGTGTGGTGTAATTGGTGCTGCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATAAGGAGCCTACTGAAGGGGGTGTGGTGTAATTGGTGCTGCTCC  422

seq1  AGCAGATAGAGCACAGCCCATCCACCCCAGCTTTTCTGGACACCTGTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAGAGCACAGCCCATCCACCCCAGCTTTTCTGGACACCTGTCTA  472

seq1  TCAGTCTTCATTCCCTCACCACCCTAGTCAGGCTTCCAGGACCAAGCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCATTCCCTCACCACCCTAGTCAGGCTTCCAGGACCAAGCTGT  522

seq1  GCTGGACCTGATACCTTGACCCTGCTTTTTAATTTTTAAATAAAGATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACCTGATACCTTGACCCTGCTTTTTAATTTTTAAATAAAGATATA  572

seq1  GTAAAATGGACTCTTCTGGGGCATACAATTCTTGAAGTTTCAGCCCACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGACTCTTCTGGGGCATACAATTCTTGAAGTTTCAGCCCACAA  622

seq1  ATGCATGTACGTACACGAACCACAAGCACAGTTAGGATTCATTATCTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTACGTACACGAACCACAAGCACAGTTAGGATTCATTATCTCTT  672

seq1  AAGACATCCTAAACACCCTTTTAAGACTGCATGTTCACTGTGTTCTTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCTAAACACCCTTTTAAGACTGCATGTTCACTGTGTTCTTGAT  722

seq1  GAAATAAATACTTATTGGAGAACTTTAACTGAGAAGCACTTTCAGGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATACTTATTGGAGAACTTTAACTGAGAAGCACTTTCAGGAAGA  772

seq1  GAGAAGTTTGTGTTCCAGGGGCTGTGTTCCCCAAGTCTGCAGTCACAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTGTGTTCCAGGGGCTGTGTTCCCCAAGTCTGCAGTCACAAAA  822

seq1  GGGCCGGTAAACCAAAGACAATGCCGCTGAGATCATGGCGACCACCGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGTAAACCAAAGACAATGCCGCTGAGATCATGGCGACCACCGTGC  872

seq1  TGTAAAACCATCTGGGATTACTTAACTTCATTCCCTGTGCATTCTCAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCATCTGGGATTACTTAACTTCATTCCCTGTGCATTCTCAGCC  922

seq1  ACACTGGACCACTTCTTCCTTCAGTGTGGGTAGCCCTGGAGGGACCATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGACCACTTCTTCCTTCAGTGTGGGTAGCCCTGGAGGGACCATAG  972

seq1  TACAGGCCCATGTAGCAGCCTATATGTGATTTCCATGTTCTGAAGCACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCCATGTAGCAGCCTATATGTGATTTCCATGTTCTGAAGCACAG  1022

seq1  CTGGGCGATGGTCATCCCAGAGTCATCCTCACCCCTGCCCTCCTGTCATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGATGGTCATCCCAGAGTCATCCTCACCCCTGCCCTCCTGTCATG  1072

seq1  CCTTCCACCCAAGAATTC  1117
      ||||||||||||||||||
seq2  CCTTCCACCCAAGAATTC  1090