BAC Information

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BAC

Clone NameB6Ng01-129L14
Chromosome14 (Build37)
Map Location 19,827,161 - 19,920,526
singlet/doubletdoublet
Overlap geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneEG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129L14.bB6Ng01-129L14.g
ACCDH931233DH931234
length1,1391,146
definitionDH931233|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L14, 5' end.DH931234|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,827,161 - 19,828,124)(19,919,122 - 19,920,526)
sequence
gaattctttgtttagctctaagccccaacttttaagggggttatttgatt
ttctggagtccaccctcttgaattctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgctggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggtttcgtgtgaagttccttga
tccacttagatttgaccttagtacaagaagataggaatggaccgattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattga
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattctaccagaggtacttt
tatccttgagaagagtttttgctattctaggttttttgttattccagagt
aactcacttctttagaacattatcatatatgatttcctcttaaatcattt
gcctactttaccttccttttcaggaaacaaaataagagcccaagactcca
caagcaaacaagaaatatccatagtgattcattttaatctcctagattac
ttggaggaacataatacatactattcatgaagcatttcctcctacttttt
aaataagaagctacagtatttgtgggcaatcctcaagttacattgtgcac
ataaccactgtgagatgtgtgttaaatgcatcgtgtccaggcttctggta
taccattctgggcactcatgccctagtggtagctgtggtttctcagcagc
aagtggctttgtttacaagatgaaatatctccgatgattgtggattattc
gttgttaatgaactatcaataagaatgccattttaaaaa
gaattcatgacagcatggatacagtatggtagtgattacatcataaagtg
tgtatccatggggtaagtgatattatccacacacaaaagatctataaaag
ccatctatacacctaggtatatgtatgtatgactttactatgtagccctg
gctgcctggaacttacagagatccatctctgggtgtgaattctaggtcta
cagcagggaatagaacacctgaataaggaagatggtttcaagagtcacta
cttgcaaataaatttttattcataagaaatagaatttaaaaaaacaggtt
ttaaaagttcaattaatatagaggtaaaagcaaaaaaagaaagagagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagacaagacca
agcacatataacttctaaataacatagcaacaactcaaagaacaaaaacc
aaaacttcattcaaaactctaacataaaattattgttcagctgctttctc
tttctgcacatttaagcagcacagacctacagcctgttactcctcctgga
cacttagtggcagtgcaataacctcagttctctgccaaggggagttgtct
gaagagaaaagggaataacaccctgaatcagccatggcttcctagttagg
gcctattcaccctaaggaaatgaactatatggaagaaaattcatccaagg
aagattgggatgctggggatggagcagggaactcttggggtgacacttat
tctgcagaatgctctcttcttgggctgtggccaatcctagcttttcttgc
agtttctgagacctgcaagagaaaggtagttactaagacacaggtttggt
ggggacaagcatggcagctgtcagccttcttgcctcccaccacctgactg
tacttgacagtcaacattaatattttcatgaaattatggatgttaaatct
gaagaatgcaagttttcacacagtcaaaaaccatggagtgacaagatcac
ctcagcttctatcagttcaccaggactgccaaggagagacgtcatgatcc
aagaaagaaaggcacatgccacatccagtttatggaatgcccatggactg
gattgccttaatccccagtcgtatgagccatgacctgcagtatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19827161_19828124
seq2: B6Ng01-129L14.b_247_1184

seq1  GAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTC  50

seq1  TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACT  100

seq1  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTCGTGTGAAGTTCCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTCGTGTGAAGTTCCTTGAT  150

seq1  CCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGACCGATTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGACCGATTCACA  200

seq1  TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG  250

seq1  CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG  300

seq1  ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGAT  350

seq1  CTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCT  400

seq1  CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTACTTTT  450

seq1  ATCCTTGAGAAGAGTTTTTGCTATTCTAGGTTTTTTGTTATTCCAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAGAAGAGTTTTTGCTATTCTAGGTTTTTTGTTATTCCAGAGTA  500

seq1  ACTCACTTCTTTAGAACATTATCATATATGATTTCCTCTTAAATCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCTTTAGAACATTATCATATATGATTTCCTCTTAAATCATTTG  550

seq1  CCTACTTTACCTTCCTTTTCAGGAAACAAAATAAGAGCCCAAGACTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTACCTTCCTTTTCAGGAAACAAAATAAGAGCCCAAGACTCCAC  600

seq1  AAGCAAAACAAGAAATATCCATAGTGATTCATTTTAATCTCCTAGATTAC  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGC-AAACAAGAAATATCCATAGTGATTCATTTTAATCTCCTAGATTAC  649

seq1  TTGGAGGAACATAATACATACTATTCATGAAGCATTTCCTCCTACTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAACATAATACATACTATTCATGAAGCATTTCCTCCTACTTTTT  699

seq1  AAATAAGAAGCTACAGTATTTGTGGGCAATCCTCAAGTTACATTGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATAAGAAGCTACAGTATTTGTGGGCAATCCTCAAGTTACATTGTGCA-  748

seq1  CATAACCACTGTGAGATGTGTGTTAAATGCATCCGTGTCCCAGGCCTTCT  800
      |||||||||||||||||||||||||||||||| ||||| ||||| |||||
seq2  CATAACCACTGTGAGATGTGTGTTAAATGCAT-CGTGT-CCAGG-CTTCT  795

seq1  GGTATACCATTCTGGGCACTCATGCCCTAGTTGGTAGCTGTGGTTTCTCA  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTATACCATTCTGGGCACTCATGCCCTAG-TGGTAGCTGTGGTTTCTCA  844

seq1  AGGCAGCACAGTGGCCTATGTTTTACAAAGATGAAATATCTTCCCGATGA  900
        |||||| ||||| || || ||||| ||||||||||||||  |||||||
seq2  --GCAGCA-AGTGG-CTTTG-TTTAC-AAGATGAAATATCT--CCGATGA  886

seq1  ATTTGTGATATTATTCGTTTGTTTTATTTGACTATTTCCACATAAAGATG  950
        |||||  |||||||||   | ||| |  |||||     ||  ||||  
seq2  --TTGTG-GATTATTCGT---TGTTAATGAACTAT-----CAATAAGAAT  925

seq1  GCGCATTTTAAAAA  964
      || |||||||||||
seq2  GC-CATTTTAAAAA  938

seq1: chr14_19919122_19920526
seq2: B6Ng01-129L14.g_70_1215 (reverse)

seq1  GCGATACTGTTGCCACTGGCAAGTGTACCTTTCAACTCTGCTTTAATCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTCCAGTCAGGGTGACAGGTGAATAACATGTCACATTCTTGCATGTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCATGATAGGTGGAATGCTATGCAGAGCTTTGAGTGAGTTCTTGTCCATA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTTGTTGGCTGGGCAGCAGATTTATAGCCCCATAAGTTCTGGGTTCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAGACAGGATACATGCACAGGTCATGTGACATCCCATGTACATGCACCTT  250
             ||||| ||  |||||||||           |  ||| |  || 
seq2  -----GCGATAC-TG--CAGGTCATG-----------GCTCATACGACT-  30

seq1  GGAGGAATTAGAGCCAACTACAAATGTCAAATGAGTGCATCTCATTAACA  300
         || |||| || ||| | ||   ||| |    | ||||  ||| ||| 
seq2  --GGGGATTA-AGGCAA-TCCA---GTCCA---TGGGCATTCCATAAAC-  69

seq1  TTGATATGGGTGGCATGTGGCCTTCTCCTTTCTTT-TTGTAATTCATTGA  349
      | |||    ||||||||||       ||||||||| ||| |  ||| |||
seq2  TGGAT----GTGGCATGTG-------CCTTTCTTTCTTGGA--TCA-TGA  105

seq1  CGTCTCTTCCTTTGCCAGGTTCTTGGTTGGAACTGATAGAAGCCTGAGTT  399
      |||||||  | ||| |||  || ||||  ||||||||||||| ||||| |
seq2  CGTCTCT--CCTTGGCAG--TCCTGGT--GAACTGATAGAAG-CTGAGGT  148

seq1  GATCTTTGTCACTCCATGGTTTTGTGACTGTTGTTGAATACTTGGCCCTT  449
      |||| |||||||||||||||||| |||||||   |||| |||||   | |
seq2  GATC-TTGTCACTCCATGGTTTT-TGACTGT--GTGAAAACTTG---CAT  191

seq1  TCTTCAGATTTAACATCCATAATTTCAATGAAAATATTAATGTTGACTGT  499
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTCAGATTTAACATCCATAATTTC-ATGAAAATATTAATGTTGACTGT  240

seq1  CAAGTACAGTTCAGGTGGTGGGAGGC-AGAAGGCTGACAGCTGCCATGCC  548
      ||||||||| |||||||||||||||| |||||||||||||||||||||| 
seq2  CAAGTACAG-TCAGGTGGTGGGAGGCAAGAAGGCTGACAGCTGCCATGCT  289

seq1  TGTCCCCACCAAACCTGTGTCTTAGTAACTACCTTTCTCTTGCAGGTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCACCAAACCTGTGTCTTAGTAACTACCTTTCTCTTGCAGGTCTC  339

seq1  AGAAACTGCAAG-AGAGCTAGGATTGGCCACAGCCCAAGAAGAGAGCATT  647
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCAAGAAAAGCTAGGATTGGCCACAGCCCAAGAAGAGAGCATT  389

seq1  CTGCAGAATAAGTTGTCACCCCAAGAGTTCCCTGCTCCATCCCCAGCATC  697
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATAAG-TGTCACCCCAAGAGTTCCCTGCTCCATCCCCAGCATC  438

seq1  CCAATCTTCCTTGGATGAATTTTCTTCCATATAGTTCATTTCCTTAGGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTCCTTGGATGAATTTTCTTCCATATAGTTCATTTCCTTAGGGT  488

seq1  GAATAGGCCCTAACTAGGAAGCCATGGCTGATTCAGGGTGTTATTCCCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCCCTAACTAGGAAGCCATGGCTGATTCAGGGTGTTATTCCCTT  538

seq1  TTCTCTTCAGACAACTCCCCTTGGCAGAGAACTGAGGTTATTGCACTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAGACAACTCCCCTTGGCAGAGAACTGAGGTTATTGCACTGCC  588

seq1  ACTAAGTGTCCAGGAGGAGTAACAGGCTGTAGGTCTGTGCTGCTTAAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGTCCAGGAGGAGTAACAGGCTGTAGGTCTGTGCTGCTTAAATG  638

seq1  TGCAGAAAGAGAAAGCAGCTGAACAATAATTTTATGTTAGAGTTTTGAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAGAGAAAGCAGCTGAACAATAATTTTATGTTAGAGTTTTGAAT  688

seq1  GAAGTTTTGGTTTTTGTTCTTTGAGTTGTTGCTATGTTATTTAGAAGTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTGGTTTTTGTTCTTTGAGTTGTTGCTATGTTATTTAGAAGTTA  738

seq1  TATGTGCTTGGTCTTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGGTCTTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  788

seq1  TTTCTTTCTTTCTCTCTTTCTTTTTTTGCTTTTACCTCTATATTAATTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTCTCTTTCTTTTTTTGCTTTTACCTCTATATTAATTGA  838

seq1  ACTTTTAAAACCTGTTTTTTTAAATTCTATTTCTTATGAATAAAAATTTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAACCTGTTTTTTTAAATTCTATTTCTTATGAATAAAAATTTA  888

seq1  TTTGCAAGTAGTGACTCTTGAAACCATCTTCCTTATTCAGGTGTTCTATT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTAGTGACTCTTGAAACCATCTTCCTTATTCAGGTGTTCTATT  938

seq1  CCCTGCTGTAGACCTAGAATTCACACCCAGAGATGGATCTCTGTAAGTTC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGTAGACCTAGAATTCACACCCAGAGATGGATCTCTGTAAGTTC  988

seq1  CAGGCAGCCAGGGCTACATAGTAAAGTCATACATACATATACCTAGGTGT  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCCAGGGCTACATAGTAAAGTCATACATACATATACCTAGGTGT  1038

seq1  ATAGATGGCTTTTATAGATCTTTTGTGTGTGGATAATATCACTTACCCCA  1347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGCTTTTATAGATCTTTTGTGTGTGGATAATATCACTTACCCCA  1088

seq1  TGGATACACACTTTATGATGTAATCACTACCATACTGTATCCATGCTGTC  1397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACACACTTTATGATGTAATCACTACCATACTGTATCCATGCTGTC  1138

seq1  ATGAATTC  1405
      ||||||||
seq2  ATGAATTC  1146