BAC Information

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BAC

Clone NameB6Ng01-130G09
Chromosome14 (Build37)
Map Location 56,779,980 - 56,882,924
singlet/doubletdoublet
Overlap geneLOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb
Upstream geneLOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg
Downstream geneLOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130G09.bB6Ng01-130G09.g
ACCDH931723DH931724
length1,005969
definitionDH931723|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G09, 5' end.DH931724|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,779,980 - 56,780,991)(56,881,950 - 56,882,924)
sequence
gaattcatgcttgtgatatctaatgagtaaattgtacacatgaaagtaat
aaaatttgctctggttttcttttatcataaaagcatgactctggttgtaa
attcagcatggcttttctttttaaaggcatcaaatgtattttaataagat
gatgctacattactgctccatttctcagaaaaaaatttcaaattgaaagt
atcaggaacaaatcatagtacactaataaaaattcacagtgcagctaccc
aagacaggcaagactaaggctactgttgcagagattgtactagtcctgtc
aagaaaagctgtgaacagcaacatcagagacacaaaaaatggaggcaagt
tatcacaagatcttttaagatatactaaaattaaaaaactctaagagaaa
gtgtcttctttaggacacaaagtggtcatatatgagatataacagaactg
tatttatgctgtaacctctgtggacatttgtctgaattcttacctggaaa
tgaatggaggaatggggctaggtcattggaggatgtttatgttttgtggt
atatatggcagtgtctctggggttgaggggaataaagttgagaaagtaat
taaaacacgactcgggcaggggaggcagagagagagagagttagagagag
agagagttagagagagagagagagagaattatcaagattaatgaagcaat
gaagctgagtccattttttatggttctccaggctctcaacaatcaatatc
aatatagttcaggaatgtaccaggcagacttgataaagcactataccaca
gactttgaattgttaaataccaccccccccttgtctcttccttcaacata
ctccctagagtagtacaagcagggaaggaaaatatattgggaagaacccc
caacagtttttcagggagagatctggctagtgcaaaaaggcccttcttta
gggctgcgggaaacaaaccatacaacttatcataaaagtggcctgtgttt
ttgga
gaattctctcccactgagtgggccataagtctaattagaaagccattagc
tacatccagggtgtaggtgccattattatactcttgggtatatgttgctg
tgctggtcattgtggtgtttttacagctaggtaggacggttaattgccat
tagctttggcacagcaccctgagatattatgagagctattactcaaggag
aggctcaaggccaggtccagcttgagtcctacatgtcctgagtcaaaagt
atgtgatgtgttcaaaatttttaatttttttctgctaggacactcattgc
atgagggaagattttcttcactaaaatctgattatattatttttctctta
ggaaagatcaacttaaagcacctttgactttgtaagacttgtttcattca
ttaacaataattgtcaataaaaccaaggtgatgagaagttttaaattcta
tggtggtgtgactccacagtgtctgtgacttgatacattggtaaagatga
gattattgagaatgtacatagtatgactcaaaatcattgtctattgtaat
ataggtgagatgaaatgatggactttttggatatgttttggtgtgtcatg
taagcaagtcattactctctaacattgaaataaattgattcacttttgta
tcatgaggtggtattttaattccaaggttttattttattttattatcaca
ggctgacttgtagtaaataatgatatctattgatattgaatataaatgga
tttgtttatagtaaataaatattttttcttctctggacactaagtaagaa
tagctacatagaatcctctagatgctaagaggaagtggggaagcagctgg
gtctgtaaagtgtttttcatgcaacaagacgacctgaattccattctcag
agcctatgtgttaagctggtggtgctgataacccttacaatccagctctg
agatacgagagagaacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56779980_56780991
seq2: B6Ng01-130G09.b_50_1054

seq1  GAATTCATGCTTGTGATATCTAATGAGTAAATTGTACACATGAAAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTGTGATATCTAATGAGTAAATTGTACACATGAAAGTAAT  50

seq1  AAAATTTGCTCTGGTTTTCTTTTATCATAAAAGCATGACTCTGGTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCTCTGGTTTTCTTTTATCATAAAAGCATGACTCTGGTTGTAA  100

seq1  ATTCAGCATGGCTTTTCTTTTTAAAGGCATCAAATGTATTTTAATAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCATGGCTTTTCTTTTTAAAGGCATCAAATGTATTTTAATAAGAT  150

seq1  GATGCTACATTACTGCTCCATTTCTCAGAAAAAAATTTCAAATTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACATTACTGCTCCATTTCTCAGAAAAAAATTTCAAATTGAAAGT  200

seq1  ATCAGGAACAAATCATAGTACACTAATAAAAATTCACAGTGCAGCTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAACAAATCATAGTACACTAATAAAAATTCACAGTGCAGCTACCC  250

seq1  AAGACAGGCAAGACTAAGGCTACTGTTGCAGAGATTGTACTAGTCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCAAGACTAAGGCTACTGTTGCAGAGATTGTACTAGTCCTGTC  300

seq1  AAGAAAAGCTGTGAACAGCAACATCAGAGACACAAAAAATGGAGGCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCTGTGAACAGCAACATCAGAGACACAAAAAATGGAGGCAAGT  350

seq1  TATCACAAGATCTTTTAAGATATACTAAAATTAAAAAACTCTAAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAGATCTTTTAAGATATACTAAAATTAAAAAACTCTAAGAGAAA  400

seq1  GTGTCTTCTTTAGGACACAAAGTGGTCATATATGAGATATAACAGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCTTTAGGACACAAAGTGGTCATATATGAGATATAACAGAACTG  450

seq1  TATTTATGCTGTAACCTCTGTGGACATTTGTCTGAATTCTTACCTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGCTGTAACCTCTGTGGACATTTGTCTGAATTCTTACCTGGAAA  500

seq1  TGAATGGAGGAATGGGGCTAGGTCATTGGAGGATGTTTATGTTTTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAGGAATGGGGCTAGGTCATTGGAGGATGTTTATGTTTTGTGGT  550

seq1  ATATATGGCAGTGTCTCTGGGGTTGAGGGGAATAAAGTTGAGAAAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGCAGTGTCTCTGGGGTTGAGGGGAATAAAGTTGAGAAAGTAAT  600

seq1  TAAAACACGACTCGGGCAGGGGAGGCAGAGAGAGAGAGAGTTAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACGACTCGGGCAGGGGAGGCAGAGAGAGAGAGAGTTAGAGAGAG  650

seq1  AGAGAGTTAGAGAGAGAGAGAGAGAGAATTATCAAGATTAATGAAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTAGAGAGAGAGAGAGAGAGAATTATCAAGATTAATGAAGCAAT  700

seq1  GAAGCTGAGTCCATTTTTTATGGTTCTCCAGGCTCTCAACAATCAATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAGTCCATTTTTTATGGTTCTCCAGGCTCTCAACAATCAATATC  750

seq1  AATATAGTTCAGGAATGTACCAGGCAGACTTGATAAAGCACTATACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTTCAGGAATGTACCAGGCAGACTTGATAAAGCACTATACCACA  800

seq1  GACTTTGATTTGTTAAATACCACCCCCCCCTTGTCCTCTTCCTTCAAACA  850
      |||||||| ||||||||||||||||||||||||| |||||||||| ||||
seq2  GACTTTGAATTGTTAAATACCACCCCCCCCTTGT-CTCTTCCTTC-AACA  848

seq1  TACTCCCTAGAGTAGTACAAGCAGGGAAGAAATATATATTGGGAAGAACC  900
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  TACTCCCTAGAGTAGTACAAGCAGGGAAGGAAAATATATTGGGAAGAACC  898

seq1  CCCAACAGTTTTTCAGGGTAGAGATCTGGCTAGTGCAAAAAGGGCCCTTC  950
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  CCCAACAGTTTTTCAGGG-AGAGATCTGGCTAGTGCAAAAA-GGCCCTTC  946

seq1  TTTTAAGGGCTGCAGGAAACTAGACAATACAACTTTATC-TAATAGTGGC  999
      |||  |||||||| |||||| | || ||||||| ||||| ||| ||||||
seq2  TTT--AGGGCTGCGGGAAAC-AAACCATACAAC-TTATCATAAAAGTGGC  992

seq1  CTGTTTATTTGGA  1012
      |||| | ||||||
seq2  CTGTGTTTTTGGA  1005

seq1: chr14_56881950_56882924
seq2: B6Ng01-130G09.g_70_1038 (reverse)

seq1  CAGGTGTCTCTCTCTGTATCTCAGAGCTTGGATTGTAAGTGTTATCAGCA  50
      ||||| |||||||| |||||||||||| ||||||||||| ||||||||||
seq2  CAGGT-TCTCTCTC-GTATCTCAGAGC-TGGATTGTAAGGGTTATCAGCA  47

seq1  CACCCAGCTTTATCACATAGGCTCTGAGAATGGAATTCAGGTCGTCTTGT  100
      |  ||||| ||| |||||||||||||||||||||||||||||||||||| 
seq2  CCACCAGC-TTAACACATAGGCTCTGAGAATGGAATTCAGGTCGTCTTG-  95

seq1  TTGCATGGAAAACACTTTACAGACCCAGCTGCTTCCCCACTTCCTCTTAG  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGAAAAACACTTTACAGACCCAGCTGCTTCCCCACTTCCTCTTAG  145

seq1  CATCTAGAGGATTCTATGTAGCTATTCTTACTTAGTGTCCAGAGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATCTAGAGGATTCTATGTAGCTATTCTTACTTAGTGTCCAGAGAAGAAA  195

seq1  AAATATTTATTTACTATAAACAAATCCATTTATATTCAATATCAATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATTTACTATAAACAAATCCATTTATATTCAATATCAATAGAT  245

seq1  ATTCATTATTTACTACAAGTCAGCCTGTGATAATAAAATAAAATAAAACC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCATTATTTACTACAAGTCAGCCTGTGATAATAAAATAAAATAAAACC  294

seq1  TTGGAATTAAAATACCACCTCATGATACAAAAGTGAATCAATTTATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTAAAATACCACCTCATGATACAAAAGTGAATCAATTTATTTCA  344

seq1  ATGTTAGAGAGTAATGACTTGCTTACATGACACACCAAAACATATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAGAGTAATGACTTGCTTACATGACACACCAAAACATATCCAAA  394

seq1  AAGTCCATCATTTCATCTCACCTATATTACAATAGACAATGATTTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATCATTTCATCTCACCTATATTACAATAGACAATGATTTTGAGT  444

seq1  CATACTATGTACATTCTCAATAATCTCATCTTTACCAATGTATCAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATGTACATTCTCAATAATCTCATCTTTACCAATGTATCAAGTCA  494

seq1  CAGACACTGTGGAGTCACACCACCATAGAATTTAAAACTTCTCATCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGTGGAGTCACACCACCATAGAATTTAAAACTTCTCATCACCT  544

seq1  TGGTTTTATTGACAATTATTGTTAATGAATGAAACAAGTCTTACAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTGACAATTATTGTTAATGAATGAAACAAGTCTTACAAAGTC  594

seq1  AAAGGTGCTTTAAGTTGATCTTTCCTAAGAGAAAAATAATATAATCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTTTAAGTTGATCTTTCCTAAGAGAAAAATAATATAATCAGAT  644

seq1  TTTAGTGAAGAAAATCTTCCCTCATGCAATGAGTGTCCTAGCAGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAGAAAATCTTCCCTCATGCAATGAGTGTCCTAGCAGAAAAAA  694

seq1  ATTAAAAATTTTGAACACATCACATACTTTTGACTCAGGACATGTAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTTTGAACACATCACATACTTTTGACTCAGGACATGTAGGAC  744

seq1  TCAAGCTGGACCTGGCCTTGAGCCTCTCCTTGAGTAATAGCTCTCATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGACCTGGCCTTGAGCCTCTCCTTGAGTAATAGCTCTCATAAT  794

seq1  ATCTCAGGGTGCTGTGCCAAAGCTAATGGCAATTAACCGTCCTACCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTGCTGTGCCAAAGCTAATGGCAATTAACCGTCCTACCTAGC  844

seq1  TGTAAAAACACCACAATGACCAGCACAGCAACATATACCCAAGAGTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACACCACAATGACCAGCACAGCAACATATACCCAAGAGTATAA  894

seq1  TAATGGCACCTACACCCTGGATGTAGCTAATGGCTTTCTAATTAGACTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCACCTACACCCTGGATGTAGCTAATGGCTTTCTAATTAGACTTA  944

seq1  TGGCCCACTCAGTGGGAGAGAATTC  975
      |||||||||||||||||||||||||
seq2  TGGCCCACTCAGTGGGAGAGAATTC  969