BAC Information

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BAC

Clone NameB6Ng01-130H16
Chromosome14 (Build37)
Map Location 103,875,501 - 104,011,467
singlet/doubletdoublet
Overlap geneScel
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneLOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H16.bB6Ng01-130H16.g
ACCDH931781DH931782
length7061,068
definitionDH931781|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H16, 5' end.DH931782|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,875,501 - 103,876,206)(104,010,389 - 104,011,467)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaatctggctcccaacccattgtacttaa
tttctgcacgagaagcttcatgtctggttttggttatgagaagcttgaag
agataatgtagagtgaggcacagaggtgttagactacataagataagaaa
gcagaaagaatcacaaaggaactcacacaatatgtactcactgataagtg
gatattagcccaaaacctaggatacccaagatataagatacaatttccta
aacacatgaaactcaagaaaaatgaagactgaagtgtggacactatgccc
ctccttagaagtgggaacaaaacacccatggaaggagggagttacagaga
caaagtttggagctgagatgaaaggatggaccatgtagagactgccatat
ccagggatccacctcataatcagcatccaaacgctgacaccattgcatac
actagcaagattttattgaaaggacccagatgtagctgtctcttgtgaga
ctatgccggggcctagcaaacacagaagtagatgctcacagtcaactact
ggatggatcacagggctcccaatggaggagctagagaaagtagccaagga
gctaaagggatctgcaaccctatagatggaacaacattatgaactaacca
gtaccc
gaattcttcactctggcttcggtcaaacacgaagtgccacacattggctg
tgcacagttaagacacaagtcagagtcacagcttatgaatatgattttta
aaaggtattactgtccagtgtacaaagacagaggggaggacacacagact
tgtgagtctttacgaagcatgccctgtacatcctgtcagggattctcagg
agtgaaagtttggaagtaccccacgcacacacagaatggggcggaatatc
ggattggttagaactgcaaaatcaacatggaaagtggatgtgagaaacaa
tctggggaaagcagagaggaaggcagagtacaaatataattaagcttatt
cttgtaattgactctgaagcctgatggaatgcgggtctctggatattttt
ccagatgtagcctcccagtcgctcattaagctcatgagtttgtcattaac
ttctgtgcttttgatcctatggaggaatcccaaataatttcattcgctat
accaacgccgtcaggaataaaggccctctaacatggagattcaggactgt
cccttcaatagcgatttgtttttcttgttctccttactgtcgaagttaaa
aataaattgaatgtactctcttgtaacaatcaattaaattttataggatt
ttgtttttcagacatattctgcatgtgttttacatcagcacttaaatttc
tcatgcttagttaaaaatgcatacccatagcatcttgctttctccttact
gatgctaattaagagcctaagttatagtaacatttggtcttgtaattttt
tttttattttttatttttggtttttcgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactttgtagaccaggctgggctcgaactcaga
atctgcctgcctctgcctcctgagtgctgagattaaagcgtgtgccacca
ccgcccggcatatgtttttttttaatgctatatttaaaataaaattaacc
atttcagtaaagtaccattaaaggccatggattgtattatgactctattt
attttattttcagtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103875501_103876206
seq2: B6Ng01-130H16.b_48_753

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAATCTGGCTCCCAACCCATTGTACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAATCTGGCTCCCAACCCATTGTACTTAA  100

seq1  TTTCTGCACGAGAAGCTTCATGTCTGGTTTTGGTTATGAGAAGCTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCACGAGAAGCTTCATGTCTGGTTTTGGTTATGAGAAGCTTGAAG  150

seq1  AGATAATGTAGAGTGAGGCACAGAGGTGTTAGACTACATAAGATAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGTAGAGTGAGGCACAGAGGTGTTAGACTACATAAGATAAGAAA  200

seq1  GCAGAAAGAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG  250

seq1  GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA  300

seq1  AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC  350

seq1  CTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGGGAGTTACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGGGAGTTACAGAGA  400

seq1  CAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATAT  450

seq1  CCAGGGATCCACCTCATAATCAGCATCCAAACGCTGACACCATTGCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATCCACCTCATAATCAGCATCCAAACGCTGACACCATTGCATAC  500

seq1  ACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGA  550

seq1  CTATGCCGGGGCCTAGCAAACACAGAAGTAGATGCTCACAGTCAACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCGGGGCCTAGCAAACACAGAAGTAGATGCTCACAGTCAACTACT  600

seq1  GGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGA  650

seq1  GCTAAAGGGATCTGCAACCCTATAGATGGAACAACATTATGAACTAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGGATCTGCAACCCTATAGATGGAACAACATTATGAACTAACCA  700

seq1  GTACCC  706
      ||||||
seq2  GTACCC  706

seq1: chr14_104010389_104011467
seq2: B6Ng01-130H16.g_68_1135 (reverse)

seq1  TTTCACTTGAAAATAAAATTAAATAGAGTCATAATTACAATCCATGCCTT  50
      |||||| ||||||||||| ||||||||||||||| ||||||||||| | |
seq2  TTTCAC-TGAAAATAAAA-TAAATAGAGTCATAA-TACAATCCATGGCCT  47

seq1  TTAATGGTACTTTTACCTGAAATGGTTAATTTTTATGTTAAATATAGCAT  100
      |||||||||||||   ||||||||||||| |||||| |||||||||||||
seq2  TTAATGGTACTTT--ACTGAAATGGTTAA-TTTTATTTTAAATATAGCAT  94

seq1  TAAAAAAAAAAACATTATGCCGGGCGGTGGTGGCACACGCCTTTAATCTC  150
      |||||||||| |   |||||||||||||||||||||||| ||||||||||
seq2  TAAAAAAAAACA---TATGCCGGGCGGTGGTGGCACACG-CTTTAATCTC  140

seq1  AGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  200
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AGCACTCAGGAGGCAGAGGCAGGCAGA-TTCTGAGTTCGAGCCCAGCCTG  189

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  239

seq1  CTCGAAAAACCAAAAATAAAAAATAAAAAAAAAATTACAAGACCAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAACCAAAAATAAAAAATAAAAAAAAAATTACAAGACCAAATGT  289

seq1  TACTATAACTTAGGCTCTTAATTAGCATCAGTAAGGAGAAAGCAAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAACTTAGGCTCTTAATTAGCATCAGTAAGGAGAAAGCAAGATGC  339

seq1  TATGGGTATGCATTTTTAACTAAGCATGAGAAATTTAAGTGCTGATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTATGCATTTTTAACTAAGCATGAGAAATTTAAGTGCTGATGTAA  389

seq1  AACACATGCAGAATATGTCTGAAAAACAAAATCCTATAAAATTTAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCAGAATATGTCTGAAAAACAAAATCCTATAAAATTTAATTGA  439

seq1  TTGTTACAAGAGAGTACATTCAATTTATTTTTAACTTCGACAGTAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAAGAGAGTACATTCAATTTATTTTTAACTTCGACAGTAAGGAG  489

seq1  AACAAGAAAAACAAATCGCTATTGAAGGGACAGTCCTGAATCTCCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAAACAAATCGCTATTGAAGGGACAGTCCTGAATCTCCATGTT  539

seq1  AGAGGGCCTTTATTCCTGACGGCGTTGGTATAGCGAATGAAATTATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCTTTATTCCTGACGGCGTTGGTATAGCGAATGAAATTATTTGG  589

seq1  GATTCCTCCATAGGATCAAAAGCACAGAAGTTAATGACAAACTCATGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCATAGGATCAAAAGCACAGAAGTTAATGACAAACTCATGAGC  639

seq1  TTAATGAGCGACTGGGAGGCTACATCTGGAAAAATATCCAGAGACCCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGCGACTGGGAGGCTACATCTGGAAAAATATCCAGAGACCCGCA  689

seq1  TTCCATCAGGCTTCAGAGTCAATTACAAGAATAAGCTTAATTATATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAGGCTTCAGAGTCAATTACAAGAATAAGCTTAATTATATTTGT  739

seq1  ACTCTGCCTTCCTCTCTGCTTTCCCCAGATTGTTTCTCACATCCACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTTCCTCTCTGCTTTCCCCAGATTGTTTCTCACATCCACTTTC  789

seq1  CATGTTGATTTTGCAGTTCTAACCAATCCGATATTCCGCCCCATTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGATTTTGCAGTTCTAACCAATCCGATATTCCGCCCCATTCTGTG  839

seq1  TGTGCGTGGGGTACTTCCAAACTTTCACTCCTGAGAATCCCTGACAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGGGGTACTTCCAAACTTTCACTCCTGAGAATCCCTGACAGGAT  889

seq1  GTACAGGGCATGCTTCGTAAAGACTCACAAGTCTGTGTGTCCTCCCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGCATGCTTCGTAAAGACTCACAAGTCTGTGTGTCCTCCCCTCT  939

seq1  GTCTTTGTACACTGGACAGTAATACCTTTTAAAAATCATATTCATAAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTACACTGGACAGTAATACCTTTTAAAAATCATATTCATAAGCT  989

seq1  GTGACTCTGACTTGTGTCTTAACTGTGCACAGCCAATGTGTGGCACTTCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGACTTGTGTCTTAACTGTGCACAGCCAATGTGTGGCACTTCG  1039

seq1  TGTTTGACCGAAGCCAGAGTGAAGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TGTTTGACCGAAGCCAGAGTGAAGAATTC  1068