BAC Information

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BAC

Clone NameB6Ng01-130L05
Chromosome14 (Build37)14 (Build37)
Map Location 44,628,106 - 44,629,13444,336,760 - 44,337,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2
Downstream geneAng-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130L05.bB6Ng01-130L05.g
ACCDH931950DH931951
length1,121373
definitionDH931950|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L05, 5' end.DH931951|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,628,106 - 44,629,134)(44,336,760 - 44,337,138)
sequence
gaattcttaaaaaatgagtgtgatattatatgatttctcaactatgtgaa
tattaaggatgcaatatgaattatacgagggccttcatgaatgctaagga
acaaaggcagctgtactataaaccaggttgtcagaaagacacaaaggcag
gcacattccggagttcaaagtcagcctgggacccagcaagtccaggccca
ggtgaggtagaatggtaattttaggactagaaatttcaggtcccaccctg
ctagtttaccatcctgtttgtcagaggcaggcagatctctgaattctttt
gcagtgttaaaagaaaatttgctcttgctgtttcctaagaattaaggtcc
tggggtcacaggatgctgagtcatggtataatcaaaagaaaacttagaga
gctgtctagagatctccagagaaagcagatctaagagagagagaaaaatc
agaacacagaggaagcaggttggaaaactgtctccagcagaacataggat
gccagcttagacccaagatttgattttgaggggtttgtttttgctgctct
cagacactctttgtctcagaacccatcaccaacctgaggctggtccttgg
cagaatctgcacttttcacataaaactacatttggggaacttcagggatt
gacataatctagttatttgagatgaaattgggtacagtctaagagtcttc
attatgtagctctggatgtcctggaacttactttgtagaccaggctggtt
ttgaactcacaaaaatacttttcaatttttactcataattttgttaccta
aggctattttcaagacctggtaagaaacaagtttttgtttgttcaagaat
cattcaggtctggtatagatcttaaaattactttaattctcctggtaggt
catggttagatttaccatcaagcacagcaaaaataacatggaggaacagg
ctatcaatgtgtgctaaattatctatttaccaacagacttaaacagcaag
aaactcagagtcagctttctgcagagtgtgaggggcagaaagaataatac
acataggggacaatgttgtgtttttgtacagaaagcatctccaggccgca
atgacagaattcaactgtgta
tctgaaaagctcttttgcaacatgacttacagttacaccttttcagataa
ttcgtctgaatctctaaaaggtattctattgctgctacactgaagatgaa
atttccagggtttggacatgcctcaactgcctcttgccccaggcctgctt
ccctcagcccctagctctctggcctcacaaaaatcaatagtctataattc
attaagagtctcttagagtctcctgacaaacacagccaaaggatgtctcc
catgccttatattggcactttttattcgatatcctatggctcttggggaa
gacttttttcccagtagcataactctctctctctctctttctctctctct
ctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44628106_44629134
seq2: B6Ng01-130L05.b_147_1164

seq1  AAGGCAGCTGTACTATAAACCAGGTTGTCAGAAAGACACAAAGGCAGGTA  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGCAGCTGTACTATAAACCAGGTTGTCAGAAAGACACAAAGGCAGGCA  50

seq1  CATTCCAGAGTTCAAAGTCAGCCTGGGACCCAGCAAGTCTAGGCCCAGGT  100
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CATTCCGGAGTTCAAAGTCAGCCTGGGACCCAGCAAGTCCAGGCCCAGGT  100

seq1  GGGGTAGAATGGTAATTTTCAGACTAGAAATTTCAGGTCCCACCCAGCTA  150
      | |||||||||||||||||  |||||||||||||||||||||||| ||||
seq2  GAGGTAGAATGGTAATTTTAGGACTAGAAATTTCAGGTCCCACCCTGCTA  150

seq1  GTTTACCATCCTGTTTGTCAGAGGCAGGCAGATCTCTGAATTCTTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATCCTGTTTGTCAGAGGCAGGCAGATCTCTGAATTCTTTTGCA  200

seq1  GTGTTAAAAGAAAATTTGCTCTTGCTGTTTCCTAAGAATTAAGGTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAAGAAAATTTGCTCTTGCTGTTTCCTAAGAATTAAGGTCCTGG  250

seq1  GGTCACAGGATGCTGAATCATGGTATAATCAAAAGAAAACTTAGAGAGCT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTCACAGGATGCTGAGTCATGGTATAATCAAAAGAAAACTTAGAGAGCT  300

seq1  GTCTAGAGATCTCCAGAGAAAGCAGATCTAAGAGAGAGAGAAAAATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGATCTCCAGAGAAAGCAGATCTAAGAGAGAGAGAAAAATCAGA  350

seq1  ACAGAGAGGAAGCAGGTTGGAAAACTGTCTCCAGCAGAACATAGGATGCC  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGAAGCAGGTTGGAAAACTGTCTCCAGCAGAACATAGGATGCC  400

seq1  AGCTTAGACCCAAGATTTGACTTTGAGGGGTTTGTTTTTGCTGCTCTCAG  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCTTAGACCCAAGATTTGATTTTGAGGGGTTTGTTTTTGCTGCTCTCAG  450

seq1  ACACTCTTTGTCTCAGAACCCATCACCAACCTGAGGCTGGTCCTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTGTCTCAGAACCCATCACCAACCTGAGGCTGGTCCTTGGCAG  500

seq1  AATCTGCACTTTTCACATAAAACTACATTTGGGGAACTTCAGGGATTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACTTTTCACATAAAACTACATTTGGGGAACTTCAGGGATTGAC  550

seq1  ATAATGTAGTTATTTGAGATGAAATTGGGTACAGTCTAAGAGTCTTCATT  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAGTTATTTGAGATGAAATTGGGTACAGTCTAAGAGTCTTCATT  600

seq1  ATGTAGCTCTGGATGTCCTGGATCTTACTTTGTAGACCAGGCTGGTTTTG  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGTAGCTCTGGATGTCCTGGAACTTACTTTGTAGACCAGGCTGGTTTTG  650

seq1  AACTCACAAAAAAACTTTTCAATTTTTACTGATAATTTTGTTACCTAAGG  700
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AACTCACAAAAATACTTTTCAATTTTTACTCATAATTTTGTTACCTAAGG  700

seq1  CTATTTTCAAGACCTGGTAAGAAACAAGTTTTTGTTTGTTCAAGAATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAAGACCTGGTAAGAAACAAGTTTTTGTTTGTTCAAGAATCAT  750

seq1  TCAGGTCTGGTATAGATCTTAAAATTACTTTAATTCTCCTGGTAGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTGGTATAGATCTTAAAATTACTTTAATTCTCCTGGTAGGTCAT  800

seq1  GGTTAGATTTACCATCAAGCATAGCAAAAATAACAATGGAGGAACAGAGC  850
      ||||||||||||||||||||| |||||||||||| |||||||||||| ||
seq2  GGTTAGATTTACCATCAAGCACAGCAAAAATAAC-ATGGAGGAACAG-GC  848

seq1  TATCAATGTGTGCTAAATTATCTATTTACCAACAGAACTTAAACAGCAAG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATCAATGTGTGCTAAATTATCTATTTACCAACAG-ACTTAAACAGCAAG  897

seq1  AAACTCAGAAGTCAAGCTTTCTGCAGTGTGTGAGGGGCCAGAAAAGAAAT  950
      |||||||| |||| |||||||||||| |||||||||| ||||||   |||
seq2  AAACTCAG-AGTC-AGCTTTCTGCAGAGTGTGAGGGG-CAGAAA--GAAT  942

seq1  AATAACACATAGGGGAACCAATG-TGTG-TTTTGTACAGAAAGCATCTCC  998
      ||| ||||||||||||  ||||| |||| ||||||||||||||||||| |
seq2  AAT-ACACATAGGGGA--CAATGTTGTGTTTTTGTACAGAAAGCATCT-C  988

seq1  CAGGCCCGCATATGACAGAA-CCAACTGTGTA  1029
      |||| ||||| |||||||||  ||||||||||
seq2  CAGG-CCGCA-ATGACAGAATTCAACTGTGTA  1018

seq1: chr14_44336760_44337138
seq2: B6Ng01-130L05.g_69_447

seq1  GAATTCTCTGAAAAGCTCTTTTGCAACATGACTTACAGTTACACCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAAGCTCTTTTGCAACATGACTTACAGTTACACCTTTTC  50

seq1  AGATAATTCGTCTGAATCTCTAAAAGGTATTCTATTGCTGCTACACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCGTCTGAATCTCTAAAAGGTATTCTATTGCTGCTACACTGAA  100

seq1  GATGAAATTTCCAGGGTTTGGACATGCCTCAACTGCCTCTTGCCCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATTTCCAGGGTTTGGACATGCCTCAACTGCCTCTTGCCCCAGGC  150

seq1  CTGCTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTCAGCCCCTAGCTCTCTGGCCTCACAAAAATCAATAGTCTA  200

seq1  TAATTCATTAAGAGTCTCTTAGAGTCTCCTGACAAACACAGCCAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTAAGAGTCTCTTAGAGTCTCCTGACAAACACAGCCAAAGGAT  250

seq1  GTCTCCCATGCCTTATATTGGCACTTTTTATTCGATATCCTATGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCATGCCTTATATTGGCACTTTTTATTCGATATCCTATGGCTCTT  300

seq1  GGGGAAGACTTTTTTCCCAGTAGCATAACTCTCTCTCTCTCTCTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGACTTTTTTCCCAGTAGCATAACTCTCTCTCTCTCTCTTTCTCT  350

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTC  379
      |||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTC  379