BAC Information

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BAC

Clone NameB6Ng01-130P20
Chromosome14 (Build37)
Map Location 5,332,344 - 5,474,638
singlet/doubletdoublet
Overlap geneLOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501
Upstream geneLOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743
Downstream geneLOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130P20.bB6Ng01-130P20.g
ACCDH932164DH932165
length1,100897
definitionDH932164|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P20, 5' end.DH932165|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,473,523 - 5,474,638)(5,332,344 - 5,333,230)
sequence
gaattcacataacaacagaaaccaaggaatgagaatccctgccttaaaaa
taagaggaaagtcattacagatatctactggacccttgcctgtggcacag
tgtagtgtaaaattgtcatagaagtactctattcctacatgcttgcccgg
gaagcccttgaaggtcagctagctccatttggtctcctggctctgctgtc
ctctgcccaggatagtaagtttaattagcacctaggggacccagtttgaa
tgagccaggatgtggcatgcacttggcttgggtagtacatgatatagcct
gtttgcacatgattattgattccttaattcagcatattatttgcttcttg
ggccatgccacaggatgaacactgaattcaacatcattaaatcacaacat
gagaagacaatgttggatatgaataaaatgatccagtccataattggttc
catgcagtattccaaggaactgatagaagataactattcctacaggtgag
ttagtgacacaaatgagacccccagaactaggcagggaatgcttctgtca
ttttaggactttgaacaaaagcaagggttctggttttatgctatctgttt
ttatccaggaaccctgccctgaggcaagggtcttggatttgtacctcttg
gacacaggtgtcctaagtgtgaagagtgtccaagaccctccaatctttat
tcttccaaattcaagatcctctacatagaaaacttttccaccacgctggg
aatatccaggaaccctgaacctctgggtttctgaccacagattaaaagat
ctaggattcccaacaaaaatgtaaagattgcacacctgtttgggtcgtct
cacctctctcagaggggctaagccctctccctgctgaagttttatggtac
cacagacctataatcaaccatgaggaacatttcctcttctgtgatgtata
tggtgtactcttggtgtcaggatttagaagtttgtgagtctgtgaatatg
ctgtatcttgaaatgacctgctctgtttgtgctgctatgtaactgagact
cttctggggctgtctgtatcagtccttgcaggaatcattgacttgtacga

gaattcaccattggaaaatcactaacagcactgtgaagttttctaaggtg
gacagcaggaagcctgtccttttcctaccctctccctcagcccctcttcc
ccacctgtgtaggattttgaggttgaatgtgcattgtgcactgctgctgc
aacgtagctcttccctgtggctgtgctgaagcagctggccagggaagcct
gggagctgaggctccagcctgtggattctctttcctcagactttagtctg
gaccagggagtggtattctctcctgtggatgtgtgtatatatattcttta
ctttatactttgttcacgtagttcggtgcattcttccaggcattctggat
gggcgctttagcctagacatttattttggcatattgtcatcttgggctgc
atgcatgtcctctcttgtttctgagtcctcaccatgctcttcccagcttc
ctgttagccaaagggaatcactctttctgaaccaaaagctctcagagcag
agctgaacctcccagaaaatgctcttctctacctaatgcgccagatgggg
gtgggcccgaaactaaacagcactgtagaggtggcctaaaggaccggaac
ccccaggcagaggtgggaggtaaggtcctagcaatggtgctgagtgaggg
tccgtaagacccagttcttctcctgtgcagagggaacttttacttagctg
gaatggtacctttgtggtccgagcatgtggagggattcggggttcagagt
gcaccccagaacataggagatagctccatgtcccccttttccttcaggag
cctttctcctcactccctgcttgcctattacaaggggaggaggatcttcc
acttgcctgggcctgctgcatcatgcccctgccctatcctttactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5473523_5474638
seq2: B6Ng01-130P20.b_49_1148 (reverse)

seq1  TCGTACAAGTCCTATGATCCCTGCAAGGGCCCTGATTCCCAGACAGCCCC  50
      |||||||||| | ||||| |||||||||   |||||   ||||||| |||
seq2  TCGTACAAGT-CAATGATTCCTGCAAGG--ACTGAT--ACAGACAG-CCC  44

seq1  CAGAAGAGTCCACAGTTACATAGCAGCACCAAACAGAGGCAGGTCATATC  100
      ||||||||| | |||||||||||||||| |||||||| ||||||||| ||
seq2  CAGAAGAGT-CTCAGTTACATAGCAGCA-CAAACAGA-GCAGGTCATTTC  91

seq1  AAGATACCAGCCATATTCCACAGGACTCAACAAACTTCTAAAAACCCTGA  150
      |||||| ||| |||||| |||| ||||| ||||||||||  ||| |||||
seq2  AAGATA-CAG-CATATT-CACA-GACTC-ACAAACTTCT--AAATCCTGA  134

seq1  CACCAAGAGTACACCATATACATCACAGAAGAGGAAATGTTCCTCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGTACACCATATACATCACAGAAGAGGAAATGTTCCTCATGGT  184

seq1  TGATTATAGGTCTGTGGTACCATAAAACCTTCAGCAGGGAGAGGGCTTAG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGATTATAGGTCTGTGGTACCATAAAA-CTTCAGCAGGGAGAGGGCTTAG  233

seq1  CCCCTCTGAGAGAGGTGAGACGA-CCAAACAGGTGTGCAATCTTTACATT  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCCTCTGAGAGAGGTGAGACGACCCAAACAGGTGTGCAATCTTTACATT  283

seq1  TTTGTTGGGAATCCTAGATCTTTTAATCTGTGGTCAGAAACCCAGAGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGGAATCCTAGATCTTTTAATCTGTGGTCAGAAACCCAGAGGTT  333

seq1  CAGGGTTCCTGGATATTCCCAGCGTGGTGGAAAAGTTTTCTATGTAGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCCTGGATATTCCCAGCGTGGTGGAAAAGTTTTCTATGTAGAGG  383

seq1  ATCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGACACTCTTCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGACACTCTTCACA  433

seq1  CTTAGGACACCTGTGTCCAAGAGGTACAAATCCAAGACCCTTGCCTCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACACCTGTGTCCAAGAGGTACAAATCCAAGACCCTTGCCTCAGG  483

seq1  GCAGGGTTCCTGGATAAAAACAGATAGCATAAAACCAGAACCCTTGCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTCCTGGATAAAAACAGATAGCATAAAACCAGAACCCTTGCTTT  533

seq1  TGTTCAAAGTCCTAAAATGACAGAAGCATTCCCTGCCTAGTTCTGGGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAGTCCTAAAATGACAGAAGCATTCCCTGCCTAGTTCTGGGGGT  583

seq1  CTCATTTGTGTCACTAACTCACCTGTAGGAATAGTTATCTTCTATCAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTGTCACTAACTCACCTGTAGGAATAGTTATCTTCTATCAGTT  633

seq1  CCTTGGAATACTGCATGGAACCAATTATGGACTGGATCATTTTATTCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAATACTGCATGGAACCAATTATGGACTGGATCATTTTATTCATA  683

seq1  TCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTTGAATTCAGTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTTGAATTCAGTGTT  733

seq1  CATCCTGTGGCATGGCCCAAGAAGCAAATAATATGCTGAATTAAGGAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTGGCATGGCCCAAGAAGCAAATAATATGCTGAATTAAGGAATC  783

seq1  AATAATCATGTGCAAACAGGCTATATCATGTACTACCCAAGCCAAGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCATGTGCAAACAGGCTATATCATGTACTACCCAAGCCAAGTGCA  833

seq1  TGCCACATCCTGGCTCATTCAAACTGGGTCCCCTAGGTGCTAATTAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCCTGGCTCATTCAAACTGGGTCCCCTAGGTGCTAATTAAACT  883

seq1  TACTATCCTGGGCAGAGGACAGCAGAGCCAGGAGACCAAATGGAGCTAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCTGGGCAGAGGACAGCAGAGCCAGGAGACCAAATGGAGCTAGC  933

seq1  TGACCTTCAAGGGCTTCCCGGGCAAGCATGTAGGAATAGAGTACTTCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCAAGGGCTTCCCGGGCAAGCATGTAGGAATAGAGTACTTCTAT  983

seq1  GACAATTTTACACTACACTGTGCCACAGGCAAGGGTCCAGTAGATATCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTTACACTACACTGTGCCACAGGCAAGGGTCCAGTAGATATCTG  1033

seq1  TAATGACTTTCCTCTTATTTTTAAGGCAGGGATTCTCATTCCTTGGTTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTTTCCTCTTATTTTTAAGGCAGGGATTCTCATTCCTTGGTTTC  1083

seq1  TGTTGTTATGTGAATTC  1116
      |||||||||||||||||
seq2  TGTTGTTATGTGAATTC  1100

seq1: chr14_5332344_5333230
seq2: B6Ng01-130P20.g_67_963

seq1  GAATTCACCATTGGAAAATCACTAACAGCACTGTGAAGTTTTCTAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTGGAAAATCACTAACAGCACTGTGAAGTTTTCTAAGGTG  50

seq1  GACAGCAGGAAGCCTGTCCTTTTCCTACCCTCTCCCTCAGCCCCTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGAAGCCTGTCCTTTTCCTACCCTCTCCCTCAGCCCCTCTTCC  100

seq1  CCACCTGTGTAGGATTTTGAGGTTGAATGTGCATTGTGCACTGCTGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGTAGGATTTTGAGGTTGAATGTGCATTGTGCACTGCTGCTGC  150

seq1  AACGTAGCTCTTCCCTGTGGCTGTGCTGAAGCAGCTGGCCAGGGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAGCTCTTCCCTGTGGCTGTGCTGAAGCAGCTGGCCAGGGAAGCCT  200

seq1  GGGAGCTGAGGCTCCAGCCTGTGGATTCTCTTTCCTCAGACTTTAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGAGGCTCCAGCCTGTGGATTCTCTTTCCTCAGACTTTAGTCTG  250

seq1  GACCAGGGAGTGGTATTCTCTCCTGTGGATGTGTGTATATATATTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGAGTGGTATTCTCTCCTGTGGATGTGTGTATATATATTCTTTA  300

seq1  CTTTATACTTTGTTCACGTAGTTCGGTGCATTCTTCCAGGCATTCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACTTTGTTCACGTAGTTCGGTGCATTCTTCCAGGCATTCTGGAT  350

seq1  GGGCGCTTTAGCCTAGACATTTATTTTGGCATATTGTCATCTTGGGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTTTAGCCTAGACATTTATTTTGGCATATTGTCATCTTGGGCTGC  400

seq1  ATGCATGTCCTCTCTTGTTTCTGAGTCCTCACCATGCTCTTCCCAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCCTCTCTTGTTTCTGAGTCCTCACCATGCTCTTCCCAGCTTC  450

seq1  CTGTTAGCCAAAGGGAATCACTCTTTCTGAACCAAAAGCTCTCAGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCCAAAGGGAATCACTCTTTCTGAACCAAAAGCTCTCAGAGCAG  500

seq1  AGCTGAACCTCCCAGAAAATGCTCTTCTCTACCTAATGCGCCAGATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACCTCCCAGAAAATGCTCTTCTCTACCTAATGCGCCAGATGGGG  550

seq1  GTGGGCCCGAAACTAAACAGCACTGTAGAGGTGGCCTAAAGGACCGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCGAAACTAAACAGCACTGTAGAGGTGGCCTAAAGGACCGGAAC  600

seq1  CCCCAGGCAGAGGTGGGAGGTAAGGTCCTAGCAATGGTGCTGAGTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCAGAGGTGGGAGGTAAGGTCCTAGCAATGGTGCTGAGTGAGGG  650

seq1  TCCGTAAGACCCAGTTCTTCTCCTGTGCAGAGGGAACTTTTACTTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAAGACCCAGTTCTTCTCCTGTGCAGAGGGAACTTTTACTTAGCTG  700

seq1  GAATGGTACC-TTGTGGTCCGAGCATGTGGAGGGATTCGGGGTTCAGAGT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTACCTTTGTGGTCCGAGCATGTGGAGGGATTCGGGGTTCAGAGT  750

seq1  GCACCCCAGAACATAGGAGATAGCTCCATGTCCCCC-TTTCCCTCAGGAG  798
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GCACCCCAGAACATAGGAGATAGCTCCATGTCCCCCTTTTCCTTCAGGAG  800

seq1  CC-TTCTCCTCACT-CCTGC-TGCCTATTACAAGGGGAGGAGGATC-TCC  844
      || ||||||||||| ||||| ||||||||||||||||||||||||| |||
seq2  CCTTTCTCCTCACTCCCTGCTTGCCTATTACAAGGGGAGGAGGATCTTCC  850

seq1  AC-TGCCT-GGCCTGCTGCATCATGCCCCTG-CCTAT-CTCTACTCT  887
      || ||||| |||||||||||||||||||||| ||||| || ||||||
seq2  ACTTGCCTGGGCCTGCTGCATCATGCCCCTGCCCTATCCTTTACTCT  897