BAC Information

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BAC

Clone NameB6Ng01-132P01
Chromosome5 (Build37)14 (Build37)
Map Location 37,408,143 - 37,408,24415,348,175 - 15,349,294
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1
Downstream geneJakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P01.bB6Ng01-132P01.g
ACCDH933619DH933620
length1,0071,111
definitionDH933619|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P01, 5' end.DH933620|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,408,143 - 37,408,244)(15,348,175 - 15,349,294)
sequence
gaattctttgtttagctctgttccccatttttcatagggttatttgtttc
tctggagtctaacttcttgagttctttgtatgtatggatactagccctct
attggatgtagggttggtaaagatcttttcccaatctgttggttgccatt
ttgtcctattgacagtgtcctttgccttacagaagtttgtaatttcatga
agtcccatttgtcaattcttagagcataggttattggtgttctgttcagg
atatgttccctcgtgcccatgtgctcaaagctcttccccactttcttttc
tattactttcaatgtatctaaatttatgtagaggtccttgatgcccttgg
atttaaactttgtacaaggatataagaatggattgatttgggggctggcg
agatggctcagtggttaagagcatcgagtgctcttccgaaggtcctgagt
tcaaatcccagcaaccacatgttggctcacaaccatccgtaatgaaatat
gatgccctcttctggagtgtctgaagacagctacagtgtacttacatata
ataaataaaataaatcttaaaaaaaaagactggattgatttgcattcttt
tgcatgctaacgaccagtcaaaccagcacgatttgttgaaaaccctatct
ttcttccactggatgattttagctcctttgtcaaagatcaagtgactgta
gaagtgtgggttcatttctaggtcttcaattgttttccattgttctccct
gcttgtcactgtaccagtaccatgtagtttttatcactattgctctatag
tacagcttgaggtctggcatgctgattcccccaggagatctctaattgtt
gagtatagttttcactatcgtggattttacttattacagatgaatttgag
aattgctcttttctaaccttagaagatttgagtttggattttgatgggga
ttgcattgaaattgtatattgctttagcaagatgctatttttactatatt
actctga
gaattctttaagatcaagaaacctgtaagaagcaggttgaagtcatctca
agcatatatagtcctccctctttttgttatttttttttctaaatcaaaac
ctctcatctactaacaagaaattttaataaaaaaatataacttaagaacc
ttaggtaggagatgggaggtaccaaatgagtataaaattatgtagacaac
aagctcagagagaggatggtggtcagttcttactcagtggtcaagcgatc
cccaaagcatcactgtgtgcttttctatccccaaaagataagcagaaggg
aatcagcaaaggaaaggcctttgatcagaccagtgactagaacctagcaa
ttctggaatgtaaaacgctggagctacataagctgtaccacctcagcagg
actgcatccaggtcccgtggagctgaatattctgcaacgtaagggtttgt
gtttaagaaaaggaatactaggtgtgaacacttagtatatactaccatgg
atatttatttgtaatggggaaatgtacaccaagttgtcatagttcttgag
aatttcttttaggatgtcactgaaacttgccaaaatatataagactgaga
agactgtctcctcttccttaccatccagagtgtgtacggacagcgcatgc
aaatgagaggtcctggtcctgccctgggattaaagctcctctttgtgtgc
agctgctcccaccctagcaaatgtcactttctgttcttctactttaataa
atgtccacaagccttccaaatgtaatataacacgctctctttccgtgtaa
agggtgaagggtgggacacagctcagcacagaatgttgtctagtatgtag
gggatcgtgggctggatgtccagcaaagcaaacagaaaaataaaaggaaa
ggtccagagatatagttttggcatttctctttagtaggcaaggaattttt
ttccctatagtaaaaatgactgagagaaccttcagaatgaaagtttaata
cttcattatttgtggagctgtgagatttggtgccagtattccccaaccac
tttcatcaaagtgtataagtttaagccacactggaaagaggcaatgtctt
tataagccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37408143_37408244
seq2: B6Ng01-132P01.b_437_537 (reverse)

seq1  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGA  50
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTACGGATGGTTGTGAGCCAACATGTGGTTGCTGGGATTTGAACTCAGGA  50

seq1  CCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGC  100
      |||||||||||||| || | |||||||| ||||||||||||||| |||||
seq2  CCTTCGGAAGAGCACTC-GATGCTCTTAACCACTGAGCCATCTCGCCAGC  99

seq1  CC  102
      ||
seq2  CC  101

seq1: chr14_15348175_15349294
seq2: B6Ng01-132P01.g_66_1176 (reverse)

seq1  CATGGCTGATAA--GCATTG-CTCTTTCCAGTGTGGCTTAAAACTTATAC  47
      ||||||| ||||   ||||| |||||||||||||||||| ||||||||||
seq2  CATGGCTTATAAAGACATTGCCTCTTTCCAGTGTGGCTT-AAACTTATAC  49

seq1  ACTTTTGGATGAAAGTGTTTGGGGAAATACTGGCCAACCCAAATCCTCAC  97
      |||||  |||||||||| |||||| |||||||||    |||||| |||||
seq2  ACTTT--GATGAAAGTGGTTGGGG-AATACTGGC---ACCAAAT-CTCAC  92

seq1  AGCTCCACAAATATATGAAAGTATTAAACTTTTCATCTGTAGGTTCTCTT  147
      ||||||||||||| ||| ||||||||||||||   |||| |||||||| |
seq2  AGCTCCACAAATA-ATG-AAGTATTAAACTTTCATTCTGAAGGTTCTC-T  139

seq1  CAGTCATTTTTACTATAGGGAAAAAAAATTCCTTGCCTACT-AAGAGAAA  196
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CAGTCATTTTTACTATAGGG-AAAAAAATTCCTTGCCTACTAAAGAGAAA  188

seq1  TGCCAAAACTATATCTCCTGGACCTTTCCTTTTATTTTTCTGTTTGCTTT  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCCAAAACTATATCT-CTGGACCTTTCCTTTTATTTTTCTGTTTGCTTT  237

seq1  GCTGGACATCCAGCCCACGATCCCCTACATACTAGACAACATTCTGTGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACATCCAGCCCACGATCCCCTACATACTAGACAACATTCTGTGCT  287

seq1  GAGCTGTGTCCCACCCTTCACCCTTTACACGGAAAGAGAGCGTGTTATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTCCCACCCTTCACCCTTTACACGGAAAGAGAGCGTGTTATAT  337

seq1  TACATTTGGAAGGCTTGTGGACATTTATTAAAGTAGAAGAACAGAAAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGGAAGGCTTGTGGACATTTATTAAAGTAGAAGAACAGAAAGTG  387

seq1  ACATTTGCTAGGGTGGGAGCAGCTGCACACAAAGAGGAGCTTTAATCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTAGGGTGGGAGCAGCTGCACACAAAGAGGAGCTTTAATCCCA  437

seq1  GGGCAGGACCAGGACCTCTCATTTGCATGCGCTGTCCGTACACACTCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGACCAGGACCTCTCATTTGCATGCGCTGTCCGTACACACTCTGG  487

seq1  ATGGTAAGGAAGAGGAGACAGTCTTCTCAGTCTTATATATTTTGGCAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGGAAGAGGAGACAGTCTTCTCAGTCTTATATATTTTGGCAAGT  537

seq1  TTCAGTGACATCCTAAAAGAAATTCTCAAGAACTATGACAACTTGGTGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACATCCTAAAAGAAATTCTCAAGAACTATGACAACTTGGTGTA  587

seq1  CATTTCCCCATTACAAATAAATATCCATGGTAGTATATACTAAGTGTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCATTACAAATAAATATCCATGGTAGTATATACTAAGTGTTCA  637

seq1  CACCTAGTATTCCTTTTCTTAAACACAAACCCTTACGTTGCAGAATATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTATTCCTTTTCTTAAACACAAACCCTTACGTTGCAGAATATTC  687

seq1  AGCTCCACGGGACCTGGATGCAGTCCTGCTGAGGTGGTACAGCTTATGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACGGGACCTGGATGCAGTCCTGCTGAGGTGGTACAGCTTATGTA  737

seq1  GCTCCAGCGTTTTACATTCCAGAATTGCTAGGTTCTAGTCACTGGTCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCGTTTTACATTCCAGAATTGCTAGGTTCTAGTCACTGGTCTGA  787

seq1  TCAAAGGCCTTTCCTTTGCTGATTCCCTTCTGCTTATCTTTTGGGGATAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCTTTCCTTTGCTGATTCCCTTCTGCTTATCTTTTGGGGATAG  837

seq1  AAAAGCACACAGTGATGCTTTGGGGATCGCTTGACCACTGAGTAAGAACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACACAGTGATGCTTTGGGGATCGCTTGACCACTGAGTAAGAACT  887

seq1  GACCACCATCCTCTCTCTGAGCTTGTTGTCTACATAATTTTATACTCATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCATCCTCTCTCTGAGCTTGTTGTCTACATAATTTTATACTCATT  937

seq1  TGGTACCTCCCATCTCCTACCTAAGGTTCTTAAGTTATATTTTTTTATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTCCCATCTCCTACCTAAGGTTCTTAAGTTATATTTTTTTATTA  987

seq1  AAATTTCTTGTTAGTAGATGAGAGGTTTTGATTTAGAAAAAAAAATAACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTGTTAGTAGATGAGAGGTTTTGATTTAGAAAAAAAAATAACA  1037

seq1  AAAAGAGGGAGGACTATATATGCTTGAGATGACTTCAACCTGCTTCTTAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGGAGGACTATATATGCTTGAGATGACTTCAACCTGCTTCTTAC  1087

seq1  AGGTTTCTTGATCTTAAAGAATTC  1120
      ||||||||||||||||||||||||
seq2  AGGTTTCTTGATCTTAAAGAATTC  1111