BAC Information

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BAC

Clone NameB6Ng01-133H09
Chromosome14 (Build37)
Map Location 44,860,524 - 45,062,892
singlet/doubletdoublet
Overlap geneEG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
Upstream geneEG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862
Downstream geneBC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H09.bB6Ng01-133H09.g
ACCDH934001DH934002
length1,011659
definitionDH934001|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H09, 5' end.DH934002|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,061,880 - 45,062,892)(44,860,524 - 44,861,181)
sequence
gaattccaaaacattgaatcattcttacatcctatacatgatgcatattg
gatcatggtgagtgatcatttgcatgtgttattagaaacagtttccaaga
cattattgagtatttttgcatcaatatttgttatggtttttatatgctca
acccactgagtggcaacataagaaggagtggccaagttagagtatatggg
acactgtgtgtgtggtcaaaaccctcaccctagctgcctggacattaatg
ctctattagcagccttcacatgaacatgtaggacactcagcttctcctgt
accatgcctttctggatgcgtccatgtggccaccttgtgggtacttgact
gatcctcttaaaacttgtatggcatccacattgaattctaggagaagctg
cagtgcagccagatttggaggagtcccaaaaccctcctgggacaactagt
catggagattgttcagcagccatccatctgcagcagttagggtgttcttc
agagtaacatctcttctcaaaagctttgaagaaccacctgtctgagggcc
agaagctcttgtgagtatatgctgatgcagagttagaaacagctctacta
ataactcagcctgatgcacagagtcctaaggggagacacagcaaatacag
aggtctgaaggaaaggacaaagtaccccaaatctgagtatccaagactgt
atcctcaaattagaaagacaacagaaaaaaatggagagggaacccagtac
gtgacaatggggagaagggaggccaggtgttcctggtggtcatgatctct
gcacagagttcacagtaaatttcaatgtggattatgaaaggagaaaatgt
tcactttcttttatacattcaccttgttgggcagataatccatgcaggaa
ggctgagaaagggctaagaaagaaagtgatctcagagaaacagaaggact
gagggttctctagtgtagtatactgtagtgtggtgtggtgcagtgtgttg
tggtgaagtac
gaattcaggttatgtcctggacttccctcatgcagtggctgccacagttt
gcctcctatatactgagaccttctggtgcttattaaattaagtatcctga
tgccaggacaacacaggttggggttccttagtaagggatcaagggcttca
agacctccctcatgagcctggaaggaaagactacccttctaaaaagttcc
caggaagtctgtgcacaggtcctggcccactttaaccctgttaccacttt
tttttaaaatatatcttcagaacacagatcagattctcagttgtaggttc
ttattgctacacagctacccagagcaaaaaaaatcagtatttgatgggag
gggactcaatatcaggatggctatatataatcctcgcgggatttaaatgt
gtcatcaaggtgaacatatagacaaagagcagtgctgactaaggtggggt
tccctgtgcatggagacagcatcaccttgcaacaggccccactgtagact
ccagattccaaggatgcatagacccatgggggacaccagtacatacacac
acacagacacacacacacacacacacacacacacacacacacagagacac
acacacaggcacacacacacaattggtcctctatgaggagtccatgttct
gtaggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45061880_45062892
seq2: B6Ng01-133H09.b_48_1058 (reverse)

seq1  GTACTTCACCACAACACACTGCACCACACCACACTACAGTATACTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCACCACAACACACTGCACCACACCACACTACAGTATACTACACT  50

seq1  AGAGAACCCTCAGTCCTTCTGTTTCTCTGAGATCAACTTTCTTTCTTAGC  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGAACCCTCAGTCCTTCTGTTTCTCTGAGATC-ACTTTCTTTCTTAGC  99

seq1  CCTTTCTCAGCCTTCCTGCATGGATTATCTGCCCAAACAAGGTGAATGTA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  CCTTTCTCAGCCTTCCTGCATGGATTATCTGCCC-AACAAGGTGAATGT-  147

seq1  ATAAAAGAAAGTGAACATTTTCTCCTTTCATAATCCACATTGAAATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAGTGAACATTTTCTCCTTTCATAATCCACATTGAAATTTAC  197

seq1  TGTGAACTCTGTGCAGAGATCATGACCACCAGGAACACCTGGCCTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTCTGTGCAGAGATCATGACCACCAGGAACACCTGGCCTCCCTT  247

seq1  CTCCCCATTGTCACGTACTGGGTTCCCTCTCCA-TTTTTTCTGTTGTCTT  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCCCATTGTCACGTACTGGGTTCCCTCTCCATTTTTTTCTGTTGTCTT  297

seq1  TCTAATTTGAGGATACAGTCTTGGATACTCAGATTTGGGGTACTTTGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTGAGGATACAGTCTTGGATACTCAGATTTGGGGTACTTTGTCC  347

seq1  TTTCCTTCAGACCTCTGTATTTGCTGTGTCTCCCCTTAGGACTCTGTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCAGACCTCTGTATTTGCTGTGTCTCCCCTTAGGACTCTGTGCA  397

seq1  TCAGGCTGAGTTATTAGTAGAGCTGTTTCTAACTCTGCATCAGCATATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGAGTTATTAGTAGAGCTGTTTCTAACTCTGCATCAGCATATAC  447

seq1  TCACAAGAGCTTCTGGCCCTCAGACAGGTGGTTCTTCAAAGCTTTTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAGCTTCTGGCCCTCAGACAGGTGGTTCTTCAAAGCTTTTGAGA  497

seq1  AGAGATGTTACTCTGAAGAACACCCTAACTGCTGCAGATGGATGGCTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTACTCTGAAGAACACCCTAACTGCTGCAGATGGATGGCTGCT  547

seq1  GAACAATCTCCATGACTAGTTGTCCCAGGAGGGTTTTGGGACTCCTCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCTCCATGACTAGTTGTCCCAGGAGGGTTTTGGGACTCCTCCAA  597

seq1  ATCTGGCTGCACTGCAGCTTCTCCTAGAATTCAATGTGGATGCCATACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTGCACTGCAGCTTCTCCTAGAATTCAATGTGGATGCCATACAA  647

seq1  GTTTTAAGAGGATCAGTCAAGTACCCACAAGGTGGCCACATGGACGCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGAGGATCAGTCAAGTACCCACAAGGTGGCCACATGGACGCATC  697

seq1  CAGAAAGGCATGGTACAGGAGAAGCTGAGTGTCCTACATGTTCATGTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCATGGTACAGGAGAAGCTGAGTGTCCTACATGTTCATGTGAA  747

seq1  GGCTGCTAATAGAGCATTAATGTCCAGGCAGCTAGGGTGAGGGTTTTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTAATAGAGCATTAATGTCCAGGCAGCTAGGGTGAGGGTTTTGAC  797

seq1  CACACACACAGTGTCCCATATACTCTAACTTGGCCACTCCTTCTTATGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGTGTCCCATATACTCTAACTTGGCCACTCCTTCTTATGTT  847

seq1  GCCACTCAGTGGGTTGAGCATATAAAAACCATAACAAATATTGATGCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGTGGGTTGAGCATATAAAAACCATAACAAATATTGATGCAAA  897

seq1  AATACTCAATAATGTCTTGGAAACTGTTTCTAATAACACATGCAAATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAATAATGTCTTGGAAACTGTTTCTAATAACACATGCAAATGAT  947

seq1  CACTCACCATGATCCAATATGCATCATGTATAGGATGTAAGAATGATTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCATGATCCAATATGCATCATGTATAGGATGTAAGAATGATTCA  997

seq1  ATGTTTTGGAATTC  1013
      ||||||||||||||
seq2  ATGTTTTGGAATTC  1011

seq1: chr14_44860524_44861181
seq2: B6Ng01-133H09.g_69_727

seq1  GAATTCAGGCTATGTCCTGGACTTCCCTCATGCAGTGGCTGCCACAGTTT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTATGTCCTGGACTTCCCTCATGCAGTGGCTGCCACAGTTT  50

seq1  GCCTCCTATATACTGAGACCTTCTGGTGCTTATTAAATTAAGTATCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTATATACTGAGACCTTCTGGTGCTTATTAAATTAAGTATCCTGA  100

seq1  TGCCAGGACAACACAGGTTGGGGTTCCTTAGTAAGGGATCAAGGGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGACAACACAGGTTGGGGTTCCTTAGTAAGGGATCAAGGGCTTCA  150

seq1  AGACCTCCCTCATGAGCCTGGAAGGAAAGACTACCCTTCTAAAAAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCCTCATGAGCCTGGAAGGAAAGACTACCCTTCTAAAAAGTTCC  200

seq1  CAGGAAGTCTGTGCACAGGTCCTGGCCCACTTTAACCCTGTTACCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCTGTGCACAGGTCCTGGCCCACTTTAACCCTGTTACCACTTT  250

seq1  TTTTTAAAATATATCTTCAGAACACAGATCAGATTCTCAGTTGTAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATATATCTTCAGAACACAGATCAGATTCTCAGTTGTAGGTTC  300

seq1  TTATTGCTACACAGCTACCCAGAGCAAAAAAAATCAGTATTTGATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTACACAGCTACCCAGAGCAAAAAAAATCAGTATTTGATGGGAG  350

seq1  GGGACTCAATATCAGGATGGCTATATATAATCCTCGCGGGATTTAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAATATCAGGATGGCTATATATAATCCTCGCGGGATTTAAATGT  400

seq1  GTCATCAAGGTGAACATATAGACAAAGAGCAGTGCTGACTAAGGTGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGGTGAACATATAGACAAAGAGCAGTGCTGACTAAGGTGGGGT  450

seq1  TCCCTGTGCATGGAGACAGCATCACCTTGCAACAGGCCCCACTGTAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCATGGAGACAGCATCACCTTGCAACAGGCCCCACTGTAGACT  500

seq1  CCAGATTCCAAGGATGCATAGACCCATGGGGGACACCAGTACATACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCAAGGATGCATAGACCCATGGGGGACACCAGTACATACACAC  550

seq1  ACACAGACACACACACACACACACACACACACACACACACACAGAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACACACACACACACACACACACACACACACACAGAGACAC  600

seq1  ACACACAGGCACACACACACAATTGGTCCTCTATGAGGAGTCCATG-TCT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACACAGGCACACACACACAATTGGTCCTCTATGAGGAGTCCATGTTCT  650

seq1  GTAGGCTTT  658
      |||||||||
seq2  GTAGGCTTT  659