BAC Information

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BAC

Clone NameB6Ng01-134L08
Chromosome14 (Build37)15 (Build37)
Map Location 84,149,551 - 84,150,58289,175,078 - 89,175,339
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L08.bB6Ng01-134L08.g
ACCDH934937DH934938
length1,036982
definitionDH934937|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L08, 5' end.DH934938|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,149,551 - 84,150,582)(89,175,078 - 89,175,339)
sequence
gaattcactaaaattgcttcaggtaacaagagagtaatttatcttcataa
ggtaaggtaaacctagagggagatgaataaaaattatttctaaattattt
atctttatgaaataaataacaaaacataaattcaatggtaaaattatagc
taaattgaaatacttattttctttagctataagaaatgcaaatatttaat
ttcagtgcctatgaacaattttatgaattgctcataaatttttatataac
tttgagttttcctttctattccattaatctctctttttctgaatcttgtt
tttatgaccctttttcatactaaacctggtataaacccaaaactcagaag
gttatagtctctaaggaaaccagcagttgttcaactaaatgaaattttat
aaaatttaaagtaaaatataatgaaatctttttccttttctcattttcgt
cctctacctgcccaagtcctctatctcaaattcactcaatgctcacagcc
tactattaaactgatagcctttatcatgattattagtcacatatatgtca
aacagccttcgtaacattcacgtttatagctataaagatacattctgact
atatttggtcagagccaattcttttggaatatggaatggagacacatgtg
cagagacttttaagtatgcaatgtgtaaaaactaagtgtctgagcggagc
taactatattaatcttactggtgtgccccagcacaacaggggtcaggcaa
tgtggccagaacctgtgaagggggaatgtaaatgctgaagtgtgtaggga
agctaccaaataatatgttcaaaagatgccatggtatcccctatgtgata
tctcaacagctgcggttacttttacaagaactgcacaaaataaagccagt
taaattccatcattgagggcctggtgagatggctcagcggtaagacactg
actgctcttcccaaggtcctgagttcaaatcccagcatcacatggtggat
cacaaccatctgtagtgagatatgacacctcttctg
gaattctatgttttacaaagaaagaagctgatatatttactgtgacttct
gtttaaataagtaatttttttatcattaaacaacattgctctagttcata
taattaagatgctatctaggacctaatgacagtttatgcatctgcctgat
atgttgtattcaaaagtttgatggtaaacttcttaaaataggtataaatg
ttattactgaatattttactgaatttaggaattacataggtgtgagatta
ccaacttctagctactatactgtaccgcagaccagcctcatcagcccccc
tcaatcctcaggagaaatcagggttctgtggtatctgaatgtaattttgt
caaagttagcatcagatatatataatacagaagaaaacaaagaagtaggg
tgtcacaagaggtaaggtatattgaagttatctgacacaaaacagaggaa
tgccttcaaaggactggcaggaaccaagcaatgtttacagttaagaataa
gaacagccttgccggactttaccccttcttagaatttggaacaaaacacc
catggaaggagttacagagacaaaatttggagctgtgacgaaaggatgga
ccatctagtgattgccatatgcagggatccatcccataatcagcttccaa
atgctgacagcattgcatacactagcaagatttttctgaaaggacccaga
tatagctctctcttgtgagactatgccggggcctagcaaacacagaagtg
gatgctcacagtcagctattggatgggtcaccaggaccctaatggaggag
ctagagaaattacccaaggagctaaagggaactgcaaccctatatgtgga
acaacaatatgaactaactaatactccggagctcttgtctttagctgcat
atgtatcaaagatggcctagtcgaccatcactgcaacagaggcccatgac
tgcaaactttatatgcccagtacagggaacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84149551_84150582
seq2: B6Ng01-134L08.b_45_1073

seq1  GAATTCACTAAAATTGCTTCAGGTAACAAGAGAGTAATTTATCTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAATTGCTTCAGGTAACAAGAGAGTAATTTATCTTCATAA  50

seq1  GGTAAGGTAAACCTAGAGGGAGATGAATAAAAATTATTTCTAAATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTAAACCTAGAGGGAGATGAATAAAAATTATTTCTAAATTATTT  100

seq1  ATCTTTATGAAATAAATAACAAAACATAAATTCAATGGTAAAATTATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATGAAATAAATAACAAAACATAAATTCAATGGTAAAATTATAGC  150

seq1  TAAATTGAAATACTTATTTTCTTTAGCTATAAGAAATGCAAATATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAATACTTATTTTCTTTAGCTATAAGAAATGCAAATATTTAAT  200

seq1  TTCAGTGCCTATGAACAATTTTATGAATTGCTCATAAATTTTTATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTATGAACAATTTTATGAATTGCTCATAAATTTTTATATAAC  250

seq1  TTTGAGTTTTCCTTTCTATTCCATTAATCTCTCTTTTTCTGAATCTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTTCCTTTCTATTCCATTAATCTCTCTTTTTCTGAATCTTGTT  300

seq1  TTTATGACCCTTTTTCATACTAAACCTGGTATAAACCCAAAACTCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACCCTTTTTCATACTAAACCTGGTATAAACCCAAAACTCAGAAG  350

seq1  GTTATAGTCTCTAAGGAAACCAGCAGTTGTTCAACTAAATGAAATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTCTCTAAGGAAACCAGCAGTTGTTCAACTAAATGAAATTTTAT  400

seq1  AAAATTTAAAGTAAAATATAATGAAATCTTTTTCCTTTTCTCATTTTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAGTAAAATATAATGAAATCTTTTTCCTTTTCTCATTTTCGT  450

seq1  CCTCTACCTGCCCAAGTCCTCTATCTCAAATTCACTCAATGCTCACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTGCCCAAGTCCTCTATCTCAAATTCACTCAATGCTCACAGCC  500

seq1  TACTATTAAACTGATAGCCTTTATCATGATTATTAGTCACATATATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAAACTGATAGCCTTTATCATGATTATTAGTCACATATATGTCA  550

seq1  AACAGCCTTCGTAACATTCACGTTTATAGCTATAAAGATACATTCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTCGTAACATTCACGTTTATAGCTATAAAGATACATTCTGACT  600

seq1  ATATTTGGTCAGAGCCAATTCTTTTGGAATATGGAATGGAGACACATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGTCAGAGCCAATTCTTTTGGAATATGGAATGGAGACACATGTG  650

seq1  CAGAGACTTTTAAGTATGCAATGTGTAAAAACTAAGTGTCTGAGCGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTTTAAGTATGCAATGTGTAAAAACTAAGTGTCTGAGCGGAGC  700

seq1  TAACTATATTAATCTTACTGGTGTGCCCCAGCACAACAGGGGTCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATATTAATCTTACTGGTGTGCCCCAGCACAACAGGGGTCAGGCAA  750

seq1  TGTGGCCAGAACCTGTGAAGGGGGAATGTAAATGCTGAAGTGTGTAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAACCTGTGAAGGGGGAATGTAAATGCTGAAGTGTGTAGGGA  800

seq1  AGCTACCAAATAATATGTTCAAAAGATGCCATGGTATCCCCTATGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAAATAATATGTTCAAAAGATGCCATGGTATCCCCTATGTGATA  850

seq1  TCTCAACAGCTGCGGTTACTTTTACAAGAACTGCACAAAATAAAGCCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGCTGCGGTTACTTTTACAAGAACTGCACAAAATAAAGCCAGT  900

seq1  TAAATTCCATCATTGAGGGCCTGGTGAGATGGCTCAGCGGGTAAGAACAC  950
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TAAATTCCATCATTGAGGGCCTGGTGAGATGGCTCAGC-GGTAAG-ACAC  948

seq1  TGACTGCTCTTCCCAAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTG  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACTGCTCTTCCCAAGGTCCTGAGTTCAAATCCCAGC-ATCACATGGTG  997

seq1  GATCACAACCATCTGTAGTGAGATATGACACC  1032
      ||||||||||||||||||||||||||||||||
seq2  GATCACAACCATCTGTAGTGAGATATGACACC  1029

seq1: chr15_89175078_89175339
seq2: B6Ng01-134L08.g_794_1048 (reverse)

seq1  GCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCT  50
      ||||| ||||||||| ||||||||||||||||| ||||  ||||||||||
seq2  GCGTT-CCCTGTACT-GGGCATATAAAGTTTGC-AGTC--ATGGGCCTCT  45

seq1  CTTTCCAGTGATGGGCGACTAGGCCATCTTTTGGTACATATGCAGCTAGA  100
        || ||||||||| ||||||||||||| |||| |||||||||||||| |
seq2  -GTTGCAGTGATGGTCGACTAGGCCATC-TTTGATACATATGCAGCTAAA  93

seq1  GTCAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  150
      | |||||||||||| ||| | ||||||||||||||||||||||| |||||
seq2  GACAAGAGCTCCGGAGTATTAGTTAGTTCATATTGTTGTTCCACATATAG  143

seq1  GGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTG  200
      |||||||| || |||||||||||||| || ||||||||||||||||||| 
seq2  GGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTA  193

seq1  GGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGT  250
      ||| ||  |||| |||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGGTGACCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGT  243

seq1  TTGCTAGGCCCC  262
      ||||||||||||
seq2  TTGCTAGGCCCC  255