BAC Information

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BAC

Clone NameB6Ng01-134P16
Chromosome14 (Build37)
Map Location 55,351,692 - 55,524,806
singlet/doubletdoublet
Overlap geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1
Upstream geneLOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe
Downstream geneSlc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134P16.bB6Ng01-134P16.g
ACCDH935143DH935144
length1,1431,070
definitionDH935143|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P16, 5' end.DH935144|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,351,692 - 55,352,839)(55,523,709 - 55,524,806)
sequence
gaattcttggtttctttcaaagtagggtttctttctggctgatagtagcc
cacatccacacaaaggggagaggggactctaggaatgtagccaagatact
atcctgctgcctaccacagctctgtttcttccaaagcaaggtgagcttcc
ttgcacgccccctatcataggtcaccctcaaagcagcaagacccccttag
cacccacactgacatgcgtgctcccacaaagccaccactcaggagtggag
acagacaagttcatcaaatacacacagcaacgtggacagaaaagtggccc
agaagggcctccgtccatcactcaccgggaggaggtgaagagggagccat
tgactccaccaaacgtggacagggcaacagaaatgggcatgatccaggcc
atgaccccgaggagtttctctccaaaagtctggggggggggaaacaagaa
atgagtggagacaaagaggtgaaacccccattccagtctattcttcgctt
tcacggtgcctgtctcccacctaccctgccgactctctctggctaatctt
gagagccccggcccagactgccatgccacagagacagctacacatcaaaa
acacacgctgtggcttagctagctgagggggcaatgtatggtggtgacaa
cagtgatgagctaacacttatccttgcttatgaatgaggaaaccgaggcg
cttagtgacctatggctgacctcagattggacactgggggaatgaaaggg
gtcaggagcagaggcgaggagctgtaagtcaaccctgtgcacactacaga
tgttgctgcacagggagattcacagacttgcagtctgattcagttcctac
cccctccttaaacacgcttacttctttattttttttcagtgctggggtca
agcccagggccctgctttgtgtgaagcacgtgctctgccactgagctatt
gtctcagttctgggtttgctatgtggtgggctttagtttcccatgtataa
atagaaattggacccttagtcagacttcctaatcacaggagcagactatg
atggaaggaaataagaccagctgttttttccttcttttagaaggtatctc
tgtgaggactgcctgtccttggcactcacctggtagacctcaa
gaattccagtaggattccttcccggaagcaccgtgcaggtcctctctagc
aagcacatgattggctagcttgagtagcacgctgttccactcctaatacc
aagggatatgaaaaaggaaagaaagctgcacagttaggacaggactggat
gtttgaaaataagcaatggctgtctaccatagtattaactcattaagaag
actctgctcaagggctttgattacttgtctgaggttacaacgctaaggag
gcccagttagagcacagagtcggagctctgctaggtacagtggcacatgc
ctttagtcccagccgtgtgggggcagaagcaggaggatctgtagttggag
gctagtctggtctacatagtgagttccaggccagccagagctactgagtg
agaccctgccaaaacaaacaatcaaaaccaccaaaaacaaaatggaaaag
gaagaaaaggataaaggtctcctccccttaacctggggattcccttggca
gtgagaaaaggagtctcttggcacccctgggaagaagcagtaggagactg
cagcccggttggtggggtgctttcttagcatacactaacccgaggtatgg
tcctctgtgcgcgtgtgtatgccctgaatctcggcactcaggaggtagag
gcaggaggatcaaaagctcaaggaaatcggcaaggctggcctgcagcacg
tgaagtactgtattaataaaatcaagcatcaccttcccaagccaacctta
tctggtcacatggtacagtagttagctagctacccatgtctggtttggct
tcaggtttggaaggagcgcaagctcttcatcttgttcaccgtgtgaaaac
tcttaaggcagataattacaatctgtataggaaatgcaggcaagtgtaaa
ggtggggtgcttcgaagagaagtgtcacacacacagcgcacgagtcgctt
acctctctggtaaggagctgggagatagctcagtgttgacatttgtgtga
gtcagaggtgacatcggtagacagaaaactctcatttatctttgagacgc
accaatcctttataaagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55351692_55352839
seq2: B6Ng01-134P16.b_48_1190

seq1  GAATTCTTGGTTTCTTTCAAAGTAGGGTTTCTTTCTGGCTGATAGTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTTCTTTCAAAGTAGGGTTTCTTTCTGGCTGATAGTAGCC  50

seq1  CACATCCACACAAAGGGGAGAGGGGACTCTAGGAATGTAGCCAAGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCACACAAAGGGGAGAGGGGACTCTAGGAATGTAGCCAAGATACT  100

seq1  ATCCTGCTGCCTACCACAGCTCTGTTTCTTCCAAAGCAAGGTGAGCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTGCCTACCACAGCTCTGTTTCTTCCAAAGCAAGGTGAGCTTCC  150

seq1  TTGCACGCCCCCTATCATAGGTCACCCTCAAAGCAGCAAGACCCCCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGCCCCCTATCATAGGTCACCCTCAAAGCAGCAAGACCCCCTTAG  200

seq1  CACCCACACTGACATGCGTGCTCCCACAAAGCCACCACTCAGGAGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACTGACATGCGTGCTCCCACAAAGCCACCACTCAGGAGTGGAG  250

seq1  ACAGACAAGTTCATCAAATACACACAGCAACGTGGACAGAAAAGTGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGTTCATCAAATACACACAGCAACGTGGACAGAAAAGTGGCCC  300

seq1  AGAAGGGCCTCCGTCCATCACTCACCGGGAGGAGGTGAAGAGGGAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCTCCGTCCATCACTCACCGGGAGGAGGTGAAGAGGGAGCCAT  350

seq1  TGACTCCACCAAACGTGGACAGGGCAACAGAAATGGGCATGATCCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCACCAAACGTGGACAGGGCAACAGAAATGGGCATGATCCAGGCC  400

seq1  ATGACCCCGAGGAGTTTCTCTCCAAAAGTCTGGGGGGGGGGAAACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCGAGGAGTTTCTCTCCAAAAGTCTGGGGGGGGGGAAACAAGAA  450

seq1  ATGAGTGGAGACAAAGAGGTGAAACCCCCATTCCAGTCTATTCTTCGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGAGACAAAGAGGTGAAACCCCCATTCCAGTCTATTCTTCGCTT  500

seq1  TCACGGTGCCTGTCTCCCACCTACCCTGCCGACTCTCTCTGGCTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTGCCTGTCTCCCACCTACCCTGCCGACTCTCTCTGGCTAATCTT  550

seq1  GAGAGCCCCGGCCCAGACTGCCATGCCACAGAGACAGCTACACATCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCCCGGCCCAGACTGCCATGCCACAGAGACAGCTACACATCAAAA  600

seq1  ACACACGCTGTGGCTTAGCTAGCTGAGGGGGCAATGTATGGTGGTGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCTGTGGCTTAGCTAGCTGAGGGGGCAATGTATGGTGGTGACAA  650

seq1  CAGTGATGAGCTAACACTTATCCTTGCTTATGAATGAGGAAACCGAGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGAGCTAACACTTATCCTTGCTTATGAATGAGGAAACCGAGGCG  700

seq1  CTTAGTGACCTATGGCTGACCTCAGATTGGACACTGGGGGAATG-AAGGG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAGTGACCTATGGCTGACCTCAGATTGGACACTGGGGGAATGAAAGGG  750

seq1  GTCAGGAGCAGAGGCGAGGAGCTGTAAGTCAACCCTGTGCACACTACAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCAGAGGCGAGGAGCTGTAAGTCAACCCTGTGCACACTACAGA  800

seq1  TGTTGCTGCACAGGGAGATTCACAGACTTGCAGTCTGATTCAGTTCCTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCACAGGGAGATTCACAGACTTGCAGTCTGATTCAGTTCCTAC  850

seq1  CCCCTCCTTAAACACGCTTACTTCTTTA-TTTTTTTCAGTGCTGGGGTCA  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCTCCTTAAACACGCTTACTTCTTTATTTTTTTTCAGTGCTGGGGTCA  900

seq1  AGCCCAGGGCCCTGC-TTGTGTGAAGCACGTGCTCTGCCACTGAGCTATT  947
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGGCCCTGCTTTGTGTGAAGCACGTGCTCTGCCACTGAGCTATT  950

seq1  GTCTCAGTTCTGGGTTTGCTATGT-GTGGGCTTTAGTTTCCCATGTATAA  996
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  GTCTCAGTTCTGGGTTTGCTATGTGGTGGGCTTTAGTTTCCCATGTAT-A  999

seq1  AATAGAAA-TGGACCCTTAGTCAGACTTCCTAAATTCACAGAAGCAGACT  1045
      |||||||| ||||||||||||||||||||||||  |||||| ||||||||
seq2  AATAGAAATTGGACCCTTAGTCAGACTTCCTAA--TCACAGGAGCAGACT  1047

seq1  ATGATGGTAGGAAAATAAGGACCAGCTGTTTTTTCCTTTTCTTTTGAGAC  1095
      ||||||| ||| |||||| |||||||||||||||||  |||||||   | 
seq2  ATGATGGAAGG-AAATAA-GACCAGCTGTTTTTTCC--TTCTTTT---AG  1090

seq1  AGGGTTTCTCTGTGAAGCCCTGGCTGTCC-TGGAACTCACTCTGTAGACC  1144
      | ||| |||||||| ||  ||| |||||| ||| ||||||   |||||||
seq2  AAGGTATCTCTGTG-AGGACTGCCTGTCCTTGGCACTCACCTGGTAGACC  1139

seq1  TCAA  1148
      ||||
seq2  TCAA  1143

seq1: chr14_55523709_55524806
seq2: B6Ng01-134P16.g_70_1139 (reverse)

seq1  CTGCTTTTATAAAAGTGATTGGTGCCCTTCTCCAAAGATAACCCTGAGAG  50
      |||| ||||||||   ||||||||  | ||| |||||||||   ||||||
seq2  CTGC-TTTATAAA--GGATTGGTG--CGTCT-CAAAGATAA--ATGAGAG  42

seq1  TTTTCTTGTCCTTCCCGATGTCACCTCTGACCTCCACACCAAATTGTCCA  100
      ||||| ||||  | |||||||||||||||||   |||||  || ||| ||
seq2  TTTTC-TGTC--TACCGATGTCACCTCTGAC--TCACAC--AAATGT-CA  84

seq1  ACACCTTGAGCTTAATCTCCCCAGGCTCCTTACCAGGAGAGGTAAGCGAC  150
      ||||  ||||||  |||||||   ||||||||||| ||||||||||||||
seq2  ACAC--TGAGCT--ATCTCCC--AGCTCCTTACCA-GAGAGGTAAGCGAC  127

seq1  TTCGTGCGCTGTGTTGTGTGACACTTTCTCTTCGAAGCCACCCCCACCTT  200
       |||||||||||| |||||||||| |||||||||||||   |||||||||
seq2  -TCGTGCGCTGTG-TGTGTGACAC-TTCTCTTCGAAGC--ACCCCACCTT  172

seq1  TACACTTGCCTGCATTTCCTATACAGATTGTAATTATCTGCCTTAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGCCTGCATTTCCTATACAGATTGTAATTATCTGCCTTAAGAGT  222

seq1  TTTCACACGGTGAACAAGATGAAGAGCTTGCGCTCCTTCCAAACCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACGGTGAACAAGATGAAGAGCTTGCGCTCCTTCCAAACCTGAAG  272

seq1  CCAAACCAGACATGGGTAGCTAGCTAACTACTGTACCATGTGACCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAGACATGGGTAGCTAGCTAACTACTGTACCATGTGACCAGATA  322

seq1  AGGTTGGCTTGGGAAGGTGATGCTTGATTTTATTAATACAGTACTTCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCTTGGGAAGGTGATGCTTGATTTTATTAATACAGTACTTCACG  372

seq1  TGCTGCAGGCCAGCCTTGCCGATTTCCTTGAGCTTTTGATCCTCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGGCCAGCCTTGCCGATTTCCTTGAGCTTTTGATCCTCCTGCCT  422

seq1  CTACCTCCTGAGTGCCGAGATTCAGGGCATACACACGCGCACAGAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCTGAGTGCCGAGATTCAGGGCATACACACGCGCACAGAGGACC  472

seq1  ATACCTCGGGTTAGTGTATGCTAAGAAAGCACCCCACCAACCGGGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCGGGTTAGTGTATGCTAAGAAAGCACCCCACCAACCGGGCTGCA  522

seq1  GTCTCCTACTGCTTCTTCCCAGGGGTGCCAAGAGACTCCTTTTCTCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTACTGCTTCTTCCCAGGGGTGCCAAGAGACTCCTTTTCTCACTG  572

seq1  CCAAGGGAATCCCCAGGTTAAGGGGAGGAGACCTTTATCCTTTTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAATCCCCAGGTTAAGGGGAGGAGACCTTTATCCTTTTCTTCCT  622

seq1  TTTCCATTTTGTTTTTGGTGGTTTTGATTGTTTGTTTTGGCAGGGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTGTTTTTGGTGGTTTTGATTGTTTGTTTTGGCAGGGTCTCA  672

seq1  CTCAGTAGCTCTGGCTGGCCTGGAACTCACTATGTAGACCAGACTAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGCTCTGGCTGGCCTGGAACTCACTATGTAGACCAGACTAGCCT  722

seq1  CCAACTACAGATCCTCCTGCTTCTGCCCCCACACGGCTGGGACTAAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACAGATCCTCCTGCTTCTGCCCCCACACGGCTGGGACTAAAGGC  772

seq1  ATGTGCCACTGTACCTAGCAGAGCTCCGACTCTGTGCTCTAACTGGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACTGTACCTAGCAGAGCTCCGACTCTGTGCTCTAACTGGGCCT  822

seq1  CCTTAGCGTTGTAACCTCAGACAAGTAATCAAAGCCCTTGAGCAGAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCGTTGTAACCTCAGACAAGTAATCAAAGCCCTTGAGCAGAGTCT  872

seq1  TCTTAATGAGTTAATACTATGGTAGACAGCCATTGCTTATTTTCAAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAGTTAATACTATGGTAGACAGCCATTGCTTATTTTCAAACAT  922

seq1  CCAGTCCTGTCCTAACTGTGCAGCTTTCTTTCCTTTTTCATATCCCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGTCCTAACTGTGCAGCTTTCTTTCCTTTTTCATATCCCTTGG  972

seq1  TATTAGGAGTGGAACAGCGTGCTACTCAAGCTAGCCAATCATGTGCTTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAGTGGAACAGCGTGCTACTCAAGCTAGCCAATCATGTGCTTGC  1022

seq1  TAGAGAGGACCTGCACGGTGCTTCCGGGAAGGAATCCTACTGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGACCTGCACGGTGCTTCCGGGAAGGAATCCTACTGGAATTC  1070