BAC Information

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BAC

Clone NameB6Ng01-135A06
Chromosome14 (Build37)
Map Location 31,465,977 - 31,467,079
singlet/doubletsinglet
Overlap geneEG665466
Upstream geneCacna2d3, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd
Downstream geneRft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A06.b
ACCDH935171
length1,108
definitionDH935171|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A06, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttaaagagagtacgatagcctggtctggcgatcctcttgtct
cctgataccacctgatcagaattaagtatttatatgtctttgcgtacatg
caaactttgtgtatcccatgaactgggaacgccagggtctctctttgcac
ctttacatggtaggggagtgtcaaactcagattggcaggcttacatggta
agctcttaacctgctgggctaatttgcaggcctgctaattatcttccctg
tactcctgttccctgttccccagcagaaggccctgtttcaaagcaaagga
aaacagaacaaaacaagccagcagtggctgctgcgggacaaagtgctcag
cagagactaatcagtgagattcttgccattggcgatcacacgaatgtagt
tacataacccttccaccaactgggctggacaggacttctcccaattttgc
aaaggaagaactgaggactgaaggtcagacacagaattttcatgtatgta
gttctctgtagaaaccttcccaaggctctgatacttggcctggttgtcga
gaggagaaaagtaagccttggaggtgtgaggtgccttgttcaaatctgca
catcatgggcctgggcagaacagatcggggtcaagggtcagactggaagt
actttatacttttttttttaaagtggccaacatacgcaatcaccattttc
aaagctctttggccttccttgctgtctggtaactgcctgtcatcttacac
atcactaccatctttatcagtacattttagatgctcatatttggatccct
tcatcccagcactcaggagacaggtgtatctctgagtttgaggctagcct
ggtctatatagcattcatcaagaacagccagaaagacatagtggaattct
gtctcaaaacaaacaaaccaaaaatccagccccttagtggtcctcaaaga
gaccctgtgggtgtttctttgttttgtcatgtctctgcccaatatcttct
tgacagtactcttcacttttcaggccccatactgaccctaactacccaag
tctgtactttctatggactaatgtatcttctcagatcatatatggaagtc
ctgatgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_31465977_31467079
seq2: B6Ng01-135A06.b_65_1151 (reverse)

seq1  CACATTCAGGACTGTCACTATATGAATTCTGAGAAGATACATTTAGTCCA  50
      |||| |||||||| ||  |||||||  |||||||||||||| ||||||||
seq2  CACA-TCAGGACT-TCCATATATGA--TCTGAGAAGATACA-TTAGTCCA  45

seq1  TAGAAAGTACAGACTGTGGGGTAGTTAGGGGTCAGTATGGGGGCCCTGAA  100
      ||||||||||||||  | ||||||||| ||||||||||||||  |||| |
seq2  TAGAAAGTACAGAC--TTGGGTAGTTA-GGGTCAGTATGGGG--CCTG-A  89

seq1  AAAGTGAAGAGTACTGTCAAGGAAGATATTTGGGCAGAGACCATGACAAA  150
      |||||||||||||||||||| ||||||| ||||||||||| |||||| ||
seq2  AAAGTGAAGAGTACTGTCAA-GAAGATA-TTGGGCAGAGA-CATGAC-AA  135

seq1  AACAAAGAAACACCCAACAGGGTCTCTTTGAGGACCACTAAGGGGGCTGG  200
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AACAAAGAAACACCC-ACAGGGTCTCTTTGAGGACCACTAA-GGGGCTGG  183

seq1  GTTTTTTGTTTGTTTGTTTTGAGACAGAATTCCACTATGTCTTTCTGGCT  250
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGTTTGTTTGTTTTGAGACAGAATTCCACTATGTCTTTCTGGCT  233

seq1  GTTCTTGATGTATGCTATATAGACCAGGCTAGCCTCAAACTCAGAGATAC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGATGAATGCTATATAGACCAGGCTAGCCTCAAACTCAGAGATAC  283

seq1  ACCTGTCTCCTGAGTGCTGGGATGAAGGGATCCAAATATGAGCATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTCCTGAGTGCTGGGATGAAGGGATCCAAATATGAGCATCTAAA  333

seq1  ATGTACTGATAAAGATGGTAGTGATGTGTAAGATGACAGGCAGTTACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGATAAAGATGGTAGTGATGTGTAAGATGACAGGCAGTTACCAG  383

seq1  ACAGCAAGGAAGGCCAAAGAGCTTTGAAAATGGTGATTGCGTATGTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGAAGGCCAAAGAGCTTTGAAAATGGTGATTGCGTATGTTGGC  433

seq1  CACTTTAAAAAAAAAAGTATAAAGTACTTCCAGTCTGACCCTTGACCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAAAAAAAAGTATAAAGTACTTCCAGTCTGACCCTTGACCCCG  483

seq1  ATCTGTTCTGCCCAGGCCCATGATGTGCAGATTTGAACAAGGCACCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCTGCCCAGGCCCATGATGTGCAGATTTGAACAAGGCACCTCAC  533

seq1  ACCTCCAAGGCTTACTTTTCTCCTCTCGACAACCAGGCCAAGTATCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAGGCTTACTTTTCTCCTCTCGACAACCAGGCCAAGTATCAGAG  583

seq1  CCTTGGGAAGGTTTCTACAGAGAACTACATACATGAAAATTCTGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAAGGTTTCTACAGAGAACTACATACATGAAAATTCTGTGTCTG  633

seq1  ACCTTCAGTCCTCAGTTCTTCCTTTGCAAAATTGGGAGAAGTCCTGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGTCCTCAGTTCTTCCTTTGCAAAATTGGGAGAAGTCCTGTCCA  683

seq1  GCCCAGTTGGTGGAAGGGTTATGTAACTACATTCGTGTGATCGCCAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTGGTGGAAGGGTTATGTAACTACATTCGTGTGATCGCCAATGG  733

seq1  CAAGAATCTCACTGATTAGTCTCTGCTGAGCACTTTGTCCCGCAGCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTCACTGATTAGTCTCTGCTGAGCACTTTGTCCCGCAGCAGCC  783

seq1  ACTGCTGGCTTGTTTTGTTCTGTTTTCCTTTGCTTTGAAACAGGGCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGCTTGTTTTGTTCTGTTTTCCTTTGCTTTGAAACAGGGCCTTC  833

seq1  TGCTGGGGAACAGGGAACAGGAGTACAGGGAAGATAATTAGCAGGCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAACAGGGAACAGGAGTACAGGGAAGATAATTAGCAGGCCTGC  883

seq1  AAATTAGCCCAGCAGGTTAAGAGCTTACCATGTAAGCCTGCCAATCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCCAGCAGGTTAAGAGCTTACCATGTAAGCCTGCCAATCTGAG  933

seq1  TTTG--ACTGCAGAACCCATGTAAAGGTGGAAAGAGAGA-ACTGATGCCT  997
      ||||  ||| |   | ||||||||||||| |||||||||  |||  |  |
seq2  TTTGACACTCCCCTA-CCATGTAAAGGTGCAAAGAGAGACCCTGGCG-TT  981

seq1  GAGAGTTCA-CTGATACACACACAACTACA-CTATGCAAAAACAAATAAA  1045
         ||||||   |||||||| |    | ||  || ||||| ||| |||||
seq2  CCCAGTTCATGGGATACACA-AAGTTTGCATGTACGCAAAGACATATAAA  1030

seq1  TATTTAATTCTCATCACTTGGGAGCTGGAGACAAGAGGATCGGGAGTTCA  1095
      || |||||||| ||||  ||| | | ||||||||||||||||  ||  | 
seq2  TACTTAATTCTGATCAGGTGGTATCAGGAGACAAGAGGATCGCCAG-ACC  1079

seq1  AGGCTATC  1103
      ||||||||
seq2  AGGCTATC  1087


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