BAC Information

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BAC

Clone NameB6Ng01-135I01
Chromosome14 (Build37)
Map Location 85,220,669 - 85,221,741
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I01.bB6Ng01-135I01.g
ACCDH935521DH935522
length1,2481,055
definitionDH935521|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I01, 5' end.DH935522|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgacattgtgttttttcactctgaacctgtaagtcaaaacac
acattcttctaaaagtttcttttgggagtggctttttatcacagcaacat
aaggtcaccaatacttgttcagtgttcaggtacacttacaaagatgctgt
tcttcatattgtggtcagggtgagtttgtgatatggcttctgaggaaagt
ttccagtaataaaatcactgtcatctttcatatcagaacctggatgtcca
tcattgagtgaatggattaagaaaatttgatccatttaaacaatggaata
ttattcaggatttaaaaataatgaatcatgaaatttgtaagtaaattcat
agaactaaaaaaaattcatattgagcaaggtagctcaacccttcccaaaa
tatggtacatattttcttatatgtgaatattagatattaagttgttgtta
aacaaactataacccataaaatcacatgaccatagaaattaggtagacag
taagagactaagagtgggaaggtcagataaccctaggaagggataataga
cagttatgatatgtaactgcttggtatttgtgtgagtagggatgaaatga
aatgatagggaaacagaaagaggagaggatagtgaaagattaccagtagg
aagagctaaaagtaaaggccatttgagctgtcatataaaagccaaaaaca
gtagaggattcctaaaatacatgcatatttgaccacaatctaaatgacat
cactttataatggggtaacagagctctattcactggatatctcccttatg
tgaagttcttcatcaaagattccccatgaaatcctccaaacaacttcagc
taattttcaaacctctccacacactgatgctaaggccttataagtgaaga
caacacctagacaaatcattgaacatagataagtcaagccaatgccttat
attgtaccttcttgtttatagatttgttttttaatggtactagaacatat
atgcaccctcccaaacagaaaggtaaatacccaaccagccaccaaacaca
tctaaatagtgacttcactgtgaatatatgtcagtacaatagcagcaact
atcttatgagaagtacacccaatgcctgatttgctcaagctcattcatga
ttgacccatattgtcttggaactttttgtgacaagatactgaaactaata
tggtcaggactctagggcactacactccatgctgcttcctgatgctag
gaattcatatttatggaaaactttggatgtgcaagtgaagaagtgatgca
cttacatgtgcatatgtgtaaacacaatcatcctaaaaacaagggcaaat
atttccagaaacaaagaaaaaaggacaaacaaacaaacaaaatggcacca
aaaccaaaaaaaaaaaaaaaaaaaaaaacgaataaaaaacaaattttaaa
caaatgaagagttgaaattagttgttctctaaatgaccccaattttcctt
ggaatcagggaagatgacattgttggtatcatgagtagttcattagcatg
agggcagtagttctaacacctaacaccttctaaatttaggtttatgattc
atgacttaatctaacctctagggagatagaaaaaggagggcgacagaagc
tctgtcagcttagccagctgatcaactctggggtttagtgaaagagccta
tttaaaaacaaaaaacaaacaaaaaaacccaacctgttttcaataaacat
gtatacacacataaaacacacagataatcactggcaagaaaataaaatct
gcaatttagacaatgacaggcttttactgtttcattactgtatgatgatt
atttgtctttggacttctgaatgacatgttgatttgtgaaccctaaatcc
tttctttaggaacattatatttttaaaaagtttgtttcttaaataggcca
tgggaaacactcactgggattttcttagctaaagaagagtcttagaaagt
ccccattttcaaggaaaaggcagtgtagattttaatagcagctttatggt
cttaccatttcaaatattaagaaataccaaatttatatgatagacattta
tttaaccttaatttatcactattgatgctgccataatattctgtttataa
tttcacagaatgttttctgtttttatgaatttggagatatatactttaac
attctatttaacacatttccctaatcttaaattaacatttctttaagtac
ataaatgttaacattgagcttattccattttatgctcatctagcttgccc
acttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85220669_85221741
seq2: B6Ng01-135I01.g_70_1124

seq1  GAATTCATATTTATGGAAAACTTTGGATGTGCAAGTGAAGAAGTGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTATGGAAAACTTTGGATGTGCAAGTGAAGAAGTGATGCA  50

seq1  CTTACATGTGCATATGTGTAAACACAATCATCCTAAAAACAAGGGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGTGCATATGTGTAAACACAATCATCCTAAAAACAAGGGCAAAT  100

seq1  ATTTCCAGAAACAAAGAAAAAAGGACAAACAAACAAACAAAATGGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAAACAAAGAAAAAAGGACAAACAAACAAACAAAATGGCACCA  150

seq1  AAACCAAAAAAAAAAAAAAAAAAAAAAACGAATAAAAAACAAATTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAAAAAAAAAAAAAACGAATAAAAAACAAATTTTAAA  200

seq1  CAAATGAAGAGTTGAAATTAGTTGTTCTCTAAATGACCCCAATTTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAGAGTTGAAATTAGTTGTTCTCTAAATGACCCCAATTTTCCTT  250

seq1  GGAATCAGGGAAGATGACATTGTTGGTATCATGAGTAGTTCATTAGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGGGAAGATGACATTGTTGGTATCATGAGTAGTTCATTAGCATG  300

seq1  AGGGCAGTAGTTCTAACACCTAACACCTTCTAAATTTAGGTTTATGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTAGTTCTAACACCTAACACCTTCTAAATTTAGGTTTATGATTC  350

seq1  ATGACTTAATCTAACCTCTAGGGAGATAGAAAAAGGAGGGCGACAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAATCTAACCTCTAGGGAGATAGAAAAAGGAGGGCGACAGAAGC  400

seq1  TCTGTCAGCTTAGCCAGCTGATCAACTCTGGGGTTTAGTGAAAGAGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCTTAGCCAGCTGATCAACTCTGGGGTTTAGTGAAAGAGCCTA  450

seq1  TTTAAAAACAAAAAACAAACAAAAAAACCCAACCTGTTTTCAATAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACAAAAAACAAACAAAAAAACCCAACCTGTTTTCAATAAACAT  500

seq1  GTATACACACATAAAACACACAGATAATCACTGGCAAGAAAATAAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACACATAAAACACACAGATAATCACTGGCAAGAAAATAAAATCT  550

seq1  GCAATTTAGACAATGACAGGCTTTTACTGTTTCATTACTGTATGATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTAGACAATGACAGGCTTTTACTGTTTCATTACTGTATGATGATT  600

seq1  ATTTGTCTTTGGACTTCTGAATGACATGTTGATTTGTGAACCCTAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTTGGACTTCTGAATGACATGTTGATTTGTGAACCCTAAATCC  650

seq1  TTTCTTTAGGAACATTATA-TTTTAAAAAGTTTGTTTCTTAAATAGGCCA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTCTTTAGGAACATTATATTTTTAAAAAGTTTGTTTCTTAAATAGGCCA  700

seq1  TGGGAAACACTCACTGGGA-TTTCTTAGCTAAAGAAGAGTCTTAGAAAGT  748
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGGAAACACTCACTGGGATTTTCTTAGCTAAAGAAGAGTCTTAGAAAGT  750

seq1  CCCCATTTTCAAGGAAAAGGCAGTGTAGATTTTAATAGCAGCTTTATGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTCAAGGAAAAGGCAGTGTAGATTTTAATAGCAGCTTTATGGT  800

seq1  CTTACCATTTCAAATAATTAAGAAATACCAAATTTAATATGATAGACATT  848
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CTTACCATTTCAAAT-ATTAAGAAATACCAAATTT-ATATGATAGACATT  848

seq1  TATTT-ACCTTAATTTATCACTATTGATGCTGCCATAATATTCTGTTTAT  897
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACCTTAATTTATCACTATTGATGCTGCCATAATATTCTGTTTAT  898

seq1  AATTTCACAGAATG-TTTCTGTTTTTTATTGAATTTGTAGATTATATACT  946
      |||||||||||||| |||||||||||   |||||||| ||| ||||||||
seq2  AATTTCACAGAATGTTTTCTGTTTTT--ATGAATTTGGAGA-TATATACT  945

seq1  TTAACATTCTAATTTAACCACATTTCCCTAATATCTTTAAAATTAAACAT  996
      |||||||||| |||||| ||||||||||||  |||||  ||||| |||| 
seq2  TTAACATTCT-ATTTAA-CACATTTCCCTA--ATCTT--AAATT-AACA-  987

seq1  TTTCTTTAAAGTACATAAATTGTTAAAACAATTGAAGCTATTCTCATTTT  1046
      ||||||| ||||||||||| ||||||    |||||   ||||| ||||||
seq2  TTTCTTT-AAGTACATAAA-TGTTAA---CATTGAGCTTATTC-CATTTT  1031

seq1  ATGCTCATCTTAGTCTATGCCCACTTG  1073
      ||||||||| ||| || ||||||||||
seq2  ATGCTCATC-TAG-CT-TGCCCACTTG  1055