BAC Information

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BAC

Clone NameB6Ng01-135L22
Chromosome14 (Build37)
Map Location 109,297,781 - 109,409,961
singlet/doubletdoublet
Overlap geneSlitrk1
Upstream geneLOC668757, EG668761
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L22.bB6Ng01-135L22.g
ACCDH935706DH935707
length1,1571,193
definitionDH935706|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L22, 5' end.DH935707|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,408,784 - 109,409,961)(109,297,781 - 109,298,986)
sequence
gaattcagtctggcagttcctcagaaaattggacatagtactaccagaag
atccagcaatacctctcctgggcatatatccagaagaagttcctactggt
aataaggactcaagctctatgttctggactagttaagggcagtatgagct
gtgcaaagtgagtgttgagaaattccctcaggtcctatgcaagaataata
gtgcttttaaccactgacctagcaccctcgatttatgtcattacaaataa
gagtttcttaaagaaacttatatcagttttagaaataaaaaaagaatatc
tgcatgtgggaaaatatctaaatatggtcttacatgccctttttctttta
ctgctaaacggattctctatccccactactttttcaaagctgggaaacat
ggaaaacatttcatgatttttaatcaatatcttacaacaaaatttttcaa
aactacagccctccggctaacagcatcatccaggagtttattaaaagcga
ggattctcaggccaccttatatttggatgagagagaaactcttgagctaa
acagcaacatctttttcacatgctttttaaataaaaattacgtttgaaaa
atcggagacgctaaatttcagctaaaatgcaattttatcttaatttctcc
atattgcttttatgttttccacagtatggtctcttccaggcttagccatg
tgtatgtattttgccaaggtataaaagttaacttttaacattcattcttt
gacatttcaaacatgtgactatcccttggctgatttaattaacattcttc
aaattagcctgtgctaactaatttgggaggaaatgccaggtgactaatct
gtgttgcctcagatgatgtctcttcctattgcttttctgctccctgcaga
tcagtctgttctgtaaagttgtcttggaagtccttacaacaaggtttctt
agtaaatgctaatctccacactccctttgtgtttcactttcccttcctct
caacactgtgaaatcccctaactgatttaacacctacatttagtactaac
ttttcctgtattggcaaatgatagtcataatcatcatattttatctactt
caatacattttatacttcctatgtcgcaagggatacttttctggatttcc
gtacatt
gaattcatcccagataccttggcatagaataattttgaataaaataactt
ttaaaatagtcactactgtggccagtcaacattccaaaaaagctgaaaat
ttcgaagagatgttcctttctggattaatagagagaatttgttctttaga
gtgttctatatttctcaaggaatgagcgattctgaaacattcggtcagga
tggagggatgagatcctgtgcttcagcagatggcacagttgaagaaaggc
caaggcattcatgctaaatgacacacaattagactgaggaatgccgagaa
tctataaaaacaggcagcagctccttattattattttgtcacgaattctc
acctttctttctgattcgttactgagctcataattttagtctgctttaag
ttttattgagatgcgattttgatttcttgtaactatatcaggcaataata
ttttcctattctgctgtggctaaacaagtatcctgcgaacagaaatgtca
aggtggtatggaacacaggacagcaatggactgagacgtcaaagatgtgg
gaaataagtgcttctcattgggccggaaacttttctctaggatatagaaa
gttatatttgaaaaatgtatgatgtaagtttttttaaatgtttaagccaa
aatacatgctttaatagaacaattctgatatcttttgagacactgcacaa
tgaaccagacccaacactgtgaacagtgtagtcaatacaagctaagtaaa
tagtaaggtgagaaagagaacattctgactttttcgtcttattaactttc
aaaattagtgtgggaagtgttcatggcaagaactatcaatagtatttcag
tagtaatattataaaaacatgcatatatatttatgttctacctgggaaac
tataatagtttgtacagctaaccaatcacagtaattgttctattcaaata
ggacatatcacattcatatttacataacaatgtaattcatgacatgttat
ttgtttagacatattctcaaatcactgtagaaatagacaatttttgtgtt
ccattagtggccatacaggatttctgttttgattgtataaccacacatgt
atgtatgtttaaatttagtcctgagtaggccttagtcagtatatcatccc
tcgatggacaaaatatattattcctggcaatacattttatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109408784_109409961
seq2: B6Ng01-135L22.b_49_1205 (reverse)

seq1  AATGTACCGGGATATCCAGGAAAAGTACTCCTTGCAGAAACATAGGAAGT  50
      |||||||  ||| ||||| ||||||||  ||||||    |||||||||||
seq2  AATGTAC--GGAAATCCA-GAAAAGTATCCCTTGC---GACATAGGAAGT  44

seq1  AATAAAAATGTAATATTGAAGTAGATAAAATATGGATGAATTTATTGACT  100
      |   ||||||   |||||||||||||||||||| |||||  ||| |||| 
seq2  A--TAAAATG---TATTGAAGTAGATAAAATAT-GATGA--TTA-TGAC-  84

seq1  TATCATTTTGCCAAATACAGGAAAAGTTAAGTACTAAATGTA-GTGTTAA  149
      ||||| |||||| ||||||||||||||| ||||||||||||| ||||| |
seq2  TATCA-TTTGCC-AATACAGGAAAAGTT-AGTACTAAATGTAGGTGTT-A  130

seq1  AATCAGTTAGGGGATTTCACAGTGTTGAGAGGAAGGGAAAGTGAAACACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTAGGGGATTTCACAGTGTTGAGAGGAAGGGAAAGTGAAACACA  180

seq1  AAGGGAGTGTGGAGATTAGCATTTACTAAGAAACCTTGTTGTAAGGACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGGGAGTGTGGAGATTAGCATTTACTAAGAAACCTTGTTGTAAGGA-CT  229

seq1  TCCAAGACAACTTTACAGAACAGACTGATCCTGCAGGGAGCAGAAAAGCA  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCAAGACAACTTTACAGAACAGACTGAT-CTGCAGGGAGCAGAAAAGCA  278

seq1  ATAGGAAGAGACATCATCTGAGGCAACACAGATTAGTCACCTGGCATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAGACATCATCTGAGGCAACACAGATTAGTCACCTGGCATTTC  328

seq1  CTCCCAAATTAGTTAGCACAGGCTAATTTGAAGAATGTTAATTAAATCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATTAGTTAGCACAGGCTAATTTGAAGAATGTTAATTAAATCAG  378

seq1  CCAAGGGATAGTCACATGTTTGAAATGTCAAAGAATGAATGTTAAAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGATAGTCACATGTTTGAAATGTCAAAGAATGAATGTTAAAAGTT  428

seq1  AACTTTTATACCTTGGCAAAATACATACACATGGCTAAGCCTGGAAGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATACCTTGGCAAAATACATACACATGGCTAAGCCTGGAAGAGA  478

seq1  CCATACTGTGGAAAACATAAAAGCAATATGGAGAAATTAAGATAAAATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGTGGAAAACATAAAAGCAATATGGAGAAATTAAGATAAAATTG  528

seq1  CATTTTAGCTGAAATTTAGCGTCTCCGATTTTTCAAACGTAATTTTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGCTGAAATTTAGCGTCTCCGATTTTTCAAACGTAATTTTTATT  578

seq1  TAAAAAGCATGTGAAAAAGATGTTGCTGTTTAGCTCAAGAGTTTCTCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATGTGAAAAAGATGTTGCTGTTTAGCTCAAGAGTTTCTCTCT  628

seq1  CATCCAAATATAAGGTGGCCTGAGAATCCTCGCTTTTAATAAACTCCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAATATAAGGTGGCCTGAGAATCCTCGCTTTTAATAAACTCCTGG  678

seq1  ATGATGCTGTTAGCCGGAGGGCTGTAGTTTTGAAAAATTTTGTTGTAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTGTTAGCCGGAGGGCTGTAGTTTTGAAAAATTTTGTTGTAAGA  728

seq1  TATTGATTAAAAATCATGAAATGTTTTCCATGTTTCCCAGCTTTGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAAAAATCATGAAATGTTTTCCATGTTTCCCAGCTTTGAAAAA  778

seq1  GTAGTGGGGATAGAGAATCCGTTTAGCAGTAAAAGAAAAAGGGCATGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGGATAGAGAATCCGTTTAGCAGTAAAAGAAAAAGGGCATGTAA  828

seq1  GACCATATTTAGATATTTTCCCACATGCAGATATTCTTTTTTTATTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATATTTAGATATTTTCCCACATGCAGATATTCTTTTTTTATTTCTA  878

seq1  AAACTGATATAAGTTTCTTTAAGAAACTCTTATTTGTAATGACATAAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATATAAGTTTCTTTAAGAAACTCTTATTTGTAATGACATAAATC  928

seq1  GAGGGTGCTAGGTCAGTGGTTAAAAGCACTATTATTCTTGCATAGGACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCTAGGTCAGTGGTTAAAAGCACTATTATTCTTGCATAGGACCT  978

seq1  GAGGGAATTTCTCAACACTCACTTTGCACAGCTCATACTGCCCTTAACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATTTCTCAACACTCACTTTGCACAGCTCATACTGCCCTTAACTA  1028

seq1  GTCCAGAACATAGAGCTTGAGTCCTTATTACCAGTAGGAACTTCTTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAACATAGAGCTTGAGTCCTTATTACCAGTAGGAACTTCTTCTGG  1078

seq1  ATATATGCCCAGGAGAGGTATTGCTGGATCTTCTGGTAGTACTATGTCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCAGGAGAGGTATTGCTGGATCTTCTGGTAGTACTATGTCCA  1128

seq1  ATTTTCTGAGGAACTGCCAGACTGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  ATTTTCTGAGGAACTGCCAGACTGAATTC  1157

seq1: chr14_109297781_109298986
seq2: B6Ng01-135L22.g_68_1260

seq1  GAATTCATCCCAGATACCTTGGCATAGAATAATTTTGAATAAAATAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCAGATACCTTGGCATAGAATAATTTTGAATAAAATAACTT  50

seq1  TTAAAATAGTCACTACTGTGGCCAGTCAACATTCCAAAAAAGCTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGTCACTACTGTGGCCAGTCAACATTCCAAAAAAGCTGAAAAT  100

seq1  TTCGAAGAGATGTTCCTTTCTGGATTAATAGAGAGAATTTGTTCTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGAGATGTTCCTTTCTGGATTAATAGAGAGAATTTGTTCTTTAGA  150

seq1  GTGTTCTATATTTCTCAAGGAATGAGCGATTCTGAAACATTCGGTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTATATTTCTCAAGGAATGAGCGATTCTGAAACATTCGGTCAGGA  200

seq1  TGGAGGGATGAGATCCTGTGCTTCAGCAGATGGCACAGTTGAAGAAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGATGAGATCCTGTGCTTCAGCAGATGGCACAGTTGAAGAAAGGC  250

seq1  CAAGGCATTCATGCTAAATGACACACAATTAGACTGAGGAATGCCGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATTCATGCTAAATGACACACAATTAGACTGAGGAATGCCGAGAA  300

seq1  TCTATAAAAACAGGCAGCAGCTCCTTATTATTATTTTGTCACGAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAAACAGGCAGCAGCTCCTTATTATTATTTTGTCACGAATTCTC  350

seq1  ACCTTTCTTTCTGATTCGTTACTGAGCTCATAATTTTAGTCTGCTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTTCTGATTCGTTACTGAGCTCATAATTTTAGTCTGCTTTAAG  400

seq1  TTTTATTGAGATGCGATTTTGATTTCTTGTAACTATATCAGGCAATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGAGATGCGATTTTGATTTCTTGTAACTATATCAGGCAATAATA  450

seq1  TTTTCCTATTCTGCTGTGGCTAAACAAGTATCCTGCGAACAGAAATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATTCTGCTGTGGCTAAACAAGTATCCTGCGAACAGAAATGTCA  500

seq1  AGGTGGTATGGAACACAGGACAGCAATGGACTGAGACGTCAAAGATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTATGGAACACAGGACAGCAATGGACTGAGACGTCAAAGATGTGG  550

seq1  GAAATAAGTGCTTCTCATTGGGCCGGAAACTTTTCTCTAGGATATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGTGCTTCTCATTGGGCCGGAAACTTTTCTCTAGGATATAGAAA  600

seq1  GTTATATTTGAAAAATGTATGATGTAAGTTTTTTTAAATGTTTAAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTGAAAAATGTATGATGTAAGTTTTTTTAAATGTTTAAGCCAA  650

seq1  AATACATGCTTTAATAGAACAATTCTGATATCTTTTGAGACACTGCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGCTTTAATAGAACAATTCTGATATCTTTTGAGACACTGCACAA  700

seq1  TGAACCAGACCCAACACTGTGAACAGTGTAGTCAATACAAGCTAAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGACCCAACACTGTGAACAGTGTAGTCAATACAAGCTAAGTAAA  750

seq1  TAGTAAGGTGAGAAAGAGAACATTCTGACTTTTTCGTCTTATTAACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGGTGAGAAAGAGAACATTCTGACTTTTTCGTCTTATTAACTTTC  800

seq1  AAAATTAGTGTGGGAAGTGTTCATGGCAAGAACTATCAATAGTATTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGTGTGGGAAGTGTTCATGGCAAGAACTATCAATAGTATTTCAG  850

seq1  TAGTAATATTATAAAAACATGCATATATATTTATGTTCTACCTGGGAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTAATATTATAAAAACATGCATATATATTTATGTTCTACCTGGG-AAA  899

seq1  CTATAATAGTTTGTACAGCTAACCAATCACAGTAATTGTTCTAATTCAAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTATAATAGTTTGTACAGCTAACCAATCACAGTAATTGTTCT-ATTCAAA  948

seq1  TAGGACATAATCACATTCATATTTACATAACAATGTAATTCAATGACATG  1000
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TAGGACAT-ATCACATTCATATTTACATAACAATGTAATTC-ATGACATG  996

seq1  TTATTTGTTTAAGACATATTCTTCAAATCACTTGTAGAAATTAGACCAAT  1050
      |||||||||| |||||||||| ||||||||| |||||||| |||| ||||
seq2  TTATTTGTTT-AGACATATTC-TCAAATCAC-TGTAGAAA-TAGA-CAAT  1041

seq1  TTTTGTGTTCCATTAGTGG-CATACAGGATTTCTGTTTTGATTGGTATAA  1099
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTTTGTGTTCCATTAGTGGCCATACAGGATTTCTGTTTTGATT-GTATAA  1090

seq1  -CACACATGTATGTATGTATAATATTAGTCCTGAAGTAGCCCTTATAGTC  1148
       ||||||||||||||||| |||  ||||||||| ||||| |||  |||||
seq2  CCACACATGTATGTATGTTTAAATTTAGTCCTG-AGTAGGCCT--TAGTC  1137

seq1  AGTAATATCATCCCTCAAATTGACAAAAT-TATTATTTCTGGCAATTACA  1197
      ||| ||||||||||||  || |||||||| ||||||| ||||||| ||||
seq2  AGT-ATATCATCCCTC-GATGGACAAAATATATTATTCCTGGCAA-TACA  1184

seq1  TTTTATATG  1206
      |||||||||
seq2  TTTTATATG  1193