BAC Information

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BAC

Clone NameB6Ng01-135P21
Chromosome14 (Build37)
Map Location 5,640,281 - 5,641,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184
Downstream geneEG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P21.bB6Ng01-135P21.g
ACCDH935890DH935891
length1,1811,176
definitionDH935890|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P21, 5' end.DH935891|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagagacctctgttcatccaggtctcagggctcatccaaagtac
agtcctgaacctgatgtggccaaccaagtgttcctgtgttgttggctgac
ctctgcctcaggcttcagaggcactggaggggcagtcttggcctttaggt
ggcagccatttcaggtcctctaccataccagataatgagtcttccacaga
ggcctgtcaactcaaaaatagaagcttgggtatttccaaagtttgggatg
ccactctacagtcatgatgaattggttacatgagatcatacaagttaact
aatgtctgtatgactattttttcttatttgaaagtgagtaatgagatcat
ctgaggagtgggtgctaagagtaaaatcactgattaaaatgagtgatagg
actgtacagagtatgggcttaattttctgggtcaagtgcaaatagctggg
aaagttcaaaacaaaaccaatagaaacaacaggaatactaacaaaaacaa
ttgtttaaaaaccttctgagtgctgggattacaggcatgtaccaactcta
ccctacttttttgtgtatgtataacaaacaaacaaacaaacatccctatt
ctagttctagcagttgcatcagagagagctgtgtgacactgcatgctgct
tcctttccccagatagctcaggtttctgtcctataccaggtcagctggag
gtaaagctggtgccatgccatgattctgcaacaatccttttcttggtaaa
attgatcctgtatacagtgagccccttgttgttggatccaggccccgtta
ggccagcaaacacataagccacccttagtgaaagagaaaaggaaaattgg
aagaaaaagacctcactttgaatctatcacctatctccccttgatttttg
aagctctgcatattgatattgtttggctcaagaacggagtgaaattcaga
tgtttcccaatgagaaatacatagtttttcactcttttattctgtgagtt
agcgggcatatagcaccagattcagcagaaccagcataggaccacagaag
ccaggagatgataatggccaaggtaagcatcctgaaccttatagaacaca
ttaaattgaagtttcatctcaactcaagcaatggcactccctgtcttacc
tctctgaactttatacctgctgtgaatcacg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacactagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactactccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaatatgccccaactggtaagaaggacacatgctccactat
gttcatagcaatagccagaagctggaaagaaccaagatgcccctcaacag
aggaatggatacagaatatgtggtacatctacacaatggagtactactca
gctattaaaaagaatgaatttatgaaattcctagccaaatggatggacct
ggagggcatcatcctgagtgaggtaacacattcacaaaggaactcacaca
atatgtactcactgataagtggatattagcccaaaacctaggatacccaa
gatataagatacaatttcctaaacacatgaaactcaagataaatgaagac
tgaagtgtggacactatgcccctccttagaagtgggaacaaaacaccctt
ggaaggagttacagagacaaagtttggagctgagatgaaagaatggacca
tgtagagactgccatatccagggatccaccccataatcagcatcccaaac
gctgacaccattgcatacactagcaagattttatcgaaggacccagatgt
agctgtctcttgtgagactatgccggggtcctagcaaacccagaagtaga
tcctcacagtcagctaatggatgaatcacagggctcccaatggagtagct
agagaaagtaccaaagaagctaatggatctgcaaccctataggtgaacaa
cattatggaactaaccagtaccccggagctctttgactcctaggaagcat
attgtatccataactatggtctagtcggcttcattggaagagaaggtcaa
tgggacttgccaacttttatatgcctcagtacagggaacgcctcgagcat
aaacggtgaaaggttgtaggtgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5640281_5641466
seq2: B6Ng01-135P21.b_50_1230

seq1  GAATTCAAGAGACCTCTGTTCATCCAGGTCTCAGGGCTCATCCAAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGACCTCTGTTCATCCAGGTCTCAGGGCTCATCCAAAGTAC  50

seq1  AGTCCTGAACCTGATGTGGCCAACCAAGTGTTCCTGTGTTGTTGGCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAACCTGATGTGGCCAACCAAGTGTTCCTGTGTTGTTGGCTGAC  100

seq1  CTCTGCCTCAGGCTTCAGAGGCACTGGAGGGGCAGTCTTGGCCTTTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCAGGCTTCAGAGGCACTGGAGGGGCAGTCTTGGCCTTTAGGT  150

seq1  GGCAGCCATTTCAGGTCCTCTACCATACCAGATAATGAGTCTTCCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCATTTCAGGTCCTCTACCATACCAGATAATGAGTCTTCCACAGA  200

seq1  GGCCTGTCAACTCAAAAATAGAAGCTTGGGTATTTCCAAAGTTTGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCAACTCAAAAATAGAAGCTTGGGTATTTCCAAAGTTTGGGATG  250

seq1  CCACTCTACAGTCATGATGAATTGGTTACATGAGATCATACAAGTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTACAGTCATGATGAATTGGTTACATGAGATCATACAAGTTAACT  300

seq1  AATGTCTGTATGACTATTTTTTCTTATTTGAAAGTGAGTAATGAGATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTATGACTATTTTTTCTTATTTGAAAGTGAGTAATGAGATCAT  350

seq1  CTGAGGAGTGGGTGCTAAGAGTAAAATCACTGATTAAAATGAGTGATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGTGGGTGCTAAGAGTAAAATCACTGATTAAAATGAGTGATAGG  400

seq1  ACTGTACAGAGTATGGGCTTAATTTTCTGGGTCAAGTGCAAATAGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGAGTATGGGCTTAATTTTCTGGGTCAAGTGCAAATAGCTGGG  450

seq1  AAAGTTCAAAACAAAACCAATAGAAACAACAGGAATACTAACAAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAAAACAAAACCAATAGAAACAACAGGAATACTAACAAAAACAA  500

seq1  TTGTTTAAAAACCTTCTGAGTGCTGGGATTACAGGCATGTACCAACTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAAACCTTCTGAGTGCTGGGATTACAGGCATGTACCAACTCTA  550

seq1  CCCTACTTTTTTGTGTATGTATAACAAACAAACAAACAAACATCCCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTTTTGTGTATGTATAACAAACAAACAAACAAACATCCCTATT  600

seq1  CTAGTTCTAGCAGTTGCATCAGAGAGAGCTGTGTGACACTGCATGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTAGCAGTTGCATCAGAGAGAGCTGTGTGACACTGCATGCTGCT  650

seq1  TCCTTTCCCCAGATAGCTCAGGTTTCTGTCCTATACCAGGTCAGCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCCAGATAGCTCAGGTTTCTGTCCTATACCAGGTCAGCTGGAG  700

seq1  GTAAAGCTGGTGCCATGCCATGATTCTGCAACAATCCTTTTCTTGGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTGGTGCCATGCCATGATTCTGCAACAATCCTTTTCTTGGTAAA  750

seq1  ATTGATCCTGTATACAGTGAGCCCCTTGTTGTTGGATCCAGGCCCCGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCTGTATACAGTGAGCCCCTTGTTGTTGGATCCAGGCCCCGTTA  800

seq1  GGCCAGCAAACACATAAGCCACCCTCAGTGAAAGAGAAAAGGAAAATTGG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCCAGCAAACACATAAGCCACCCTTAGTGAAAGAGAAAAGGAAAATTGG  850

seq1  AAGAAAAAGACCTCAACTTTGAATCTATCACCTATCTCCCCTTGATTTTT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGACCTC-ACTTTGAATCTATCACCTATCTCCCCTTGATTTTT  899

seq1  G-AGCTCTGCATATTGATATTGTTTGGCTCAAGAAGGGAGTGAAATTCAG  949
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGCTCTGCATATTGATATTGTTTGGCTCAAGAACGGAGTGAAATTCAG  949

seq1  ATGGTTTCCCAATGAAGACATACATAGTTTTTCACTCTTT--ATCTGTGA  997
      || ||||||||||| ||| |||||||||||||||||||||   |||||||
seq2  AT-GTTTCCCAATG-AGAAATACATAGTTTTTCACTCTTTTATTCTGTGA  997

seq1  GGTTAGCGGGCATTATAGCA-CAGATTCAGCAGACCCAGCATAAGAACAC  1046
       ||||||||||| ||||||| ||||||||||||| |||||||| || |||
seq2  -GTTAGCGGGCA-TATAGCACCAGATTCAGCAGAACCAGCATAGGACCAC  1045

seq1  AGAAGCCA-GAGATGATAAT-GCCAAGGGACAGCATCCTGAA-CTTATAG  1093
      |||||||| ||||||||||| ||||||| | ||||||||||| |||||||
seq2  AGAAGCCAGGAGATGATAATGGCCAAGGTA-AGCATCCTGAACCTTATAG  1094

seq1  -ACACATTAAAATTGAGGTTTCATCTCAACTCAGGCCATTGCACTCCCTG  1142
       ||||||| ||||||| |||||||||||||||| || || ||||||||||
seq2  AACACATT-AAATTGAAGTTTCATCTCAACTCAAGCAATGGCACTCCCTG  1143

seq1  TCCTACCTC-CTGAGTCTTATACTTGCTGTGAGTACAGTATCACG  1186
      || |||||| ||||   |||||| ||||||||       ||||||
seq2  TCTTACCTCTCTGAACTTTATACCTGCTGTGA-------ATCACG  1181