BAC Information

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BAC

Clone NameB6Ng01-136J21
Chromosome1 (Build37)14 (Build37)
Map Location 153,036,786 - 153,037,04688,156,959 - 88,157,335
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758
Downstream geneEG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136J21.bB6Ng01-136J21.g
ACCDH936346DH936347
length1,044950
definitionDH936346|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J21, 5' end.DH936347|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,036,786 - 153,037,046)(88,156,959 - 88,157,335)
sequence
gaattctatcagactttcaaagaagacctaataccaatattcttcaaaat
ttccacaaaatagaaacagaaataacactacccaattttttctatggagc
cacaattacacttatatgtaaaccacataaaggaccaacaaagaaagaaa
acttcagaacaatttcccttatgaatattgatgcaaaaatactcaataaa
attcttgccaactgaatccaagaattcatcaaacgatcattcaccatgat
caattaggcttcatcccaggaatgtagggatggttcaatatatggaaatc
catcaatgtaatacactaaataaacaaattcaaagaaaataaccacatga
acatttcattagatgctgaaaatcatttgacaaaattcaatatcccttca
tgttaaaaatcttgaaaagatcaggaattcaatgcccatacctaaacata
gtaaaagcaatatacagcaaaccagtagccaacatcaaaataaatggaga
gaaacttgaagcaatcccactaaaattagggactaggcatggctgccctc
tctctccctatctattcaatatggtacttgaagttctagctagagcaatt
agacaacaaaaggaagtcaaaggatacaaattggaaagaaagaagtcaaa
ctatcactatttgcagatgatatgatagtatacctaagcgatgacaaaaa
ctccaccagacaactcctacagctgacaaactacttcagcaaagtggcca
gataataaaagtaactaaaatcagtagccttcctatactcaaagaataca
caagatgagaaagaaattagggaaacaacacccttcacaatagtcacaaa
caatataaagtatcttggtgtgactctaaccaaacaagtgaaagatgtat
atgacaagaacttcaagtctctgaagaagaaatctaagaagacctcagag
attaaagatctcctatggtagtggattggtaggattaacatagtaaaatg
gccatcttgctgaagcatctacagatcaatgcaatcccttcaaa
gaattccaagtaccacacattcacagaaactatctgcagctggcaaaaac
aaaccctagctagagcatgaggcacaccatagtcacctgcttgaggcagc
cccatgtccatgtacatgggattaaaatgagactattttcctaaaatact
tttgtgtgtttgtgtgtgtgtgtgttttcaaagaaaccccaaattctcac
ttacaggttgagattcaccaaagtcataaaagttatcaataatgtcacaa
tcaaataaccccattaaaaaatggggctcagagctgaacaaagaattctc
acctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacat
ccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccatctc
acaccattcagaatggctaagattaaaacttcaggtgacagcagatgctg
gtgaggatgtggagaaagaggaacacttctccattgttggtgggattgca
agcttgtacaaccactctggaaatcagtctggcaggttcctcagaaaatt
gtacatagtactaccagaggatcctgcaataactcttctgggcatatata
cagaatatgttctaaccggtaagaaggacacatgctccactatgttcata
gcagccttatttataatagccagaagctggaaagaactcagatgcccctc
aacagaggaatggatacagaaaatgtggtacaattacaatggagtactac
tcagctattaaaaagaatgaatttatgaaattcctagacaaatggatgga
cctggagggcatcatcctgagtgaggtaacccaatcacaaaggaactcac
acaatatgtactcactgataagtggatatagcccaaaacctaggataccc
aagatataactaaacacataaatttcctaaacacatgaaactcagaaaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153036786_153037046
seq2: B6Ng01-136J21.b_646_900

seq1  ACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAA  50
      ||||||||||||  ||||  ||||||||||||||||| ||||||||||| 
seq2  ACAACAAAAGGAAGTCAA-AGGATACAAATTGGAAAGAAAGAAGTCAAAC  49

seq1  TATCACTTTTTGCAGATGATATGATAGTGTATATATAAGTGACCCTAAAA  100
      ||||||| ||||||||||||||||||  |||||  |||| ||    ||||
seq2  TATCACTATTTGCAGATGATATGATA--GTATACCTAAGCGATGACAAAA  97

seq1  ATTCCACCAGACAACTTCTAAACCTGATAAACAGCTCCGGTGAAGTAGCT  150
      | |||||||||||||| ||| | |||| ||||  || | |  |||| || 
seq2  ACTCCACCAGACAACTCCTACAGCTGACAAACTACTTCAGCAAAGTGGCC  147

seq1  GGAT-ATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGA  199
       ||| |||||| ||||| |||    ||| | ||||| || ||| ||||||
seq2  AGATAATAAAAGTAACTAAAA----TCAGTAGCCTTCCTATACTCAAAGA  193

seq1  ATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTC  249
      ||| ||| | ||||||||||||||||||||||||||||||| ||||||||
seq2  ATACACAAGATGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTC  243

seq1  ACAAATAATATA  261
      ||||| ||||||
seq2  ACAAACAATATA  255

seq1: chr14_88156959_88157335
seq2: B6Ng01-136J21.g_355_743

seq1  AACAAAGAATTCTCAACTGAGGAATATCAAATGGCTGAGAAGCACCTGAA  50
      ||||||||||||||| |||||||||| | |||||| ||||| ||||||||
seq2  AACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAA  50

seq1  AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC  100

seq1  TCAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGT  150
      | |||||||| ||||||||| |||||||||||||||| |||| |||||||
seq2  TGAGATTCCATCTCACACCATTCAGAATGGCTAAGATTAAAACTTCAGGT  150

seq1  GACAGTATATACTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG  200
      ||||| | || |||||||||||||||||||||||||||||| ||||||||
seq2  GACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTTCTCCATTG  200

seq1  CTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAAATGAGTCTGG-TGG  249
       ||||||||||||||||||||||||| ||||||||||| |||||||  ||
seq2  TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGG  250

seq1  TTCCTCAGAAAATTGGACAT-----------AGGATCCAGTAATACCTCT  288
      ||||||||||||||| ||||           ||||||| | |||| ||||
seq2  TTCCTCAGAAAATTGTACATAGTACTACCAGAGGATCCTGCAATAACTCT  300

seq1  CCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCT  338
       |||||||||||| ||||| |||||| ||| |||||||||||||||||||
seq2  TCTGGGCATATATACAGAATATGTTCTAACCGGTAAGAAGGACACATGCT  350

seq1  CCACTATGTTCATAGCAGCCTTATTTATAATACCCAGAA  377
      |||||||||||||||||||||||||||||||| ||||||
seq2  CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA  389