BAC Information

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BAC

Clone NameB6Ng01-137J03
Chromosome14 (Build37)
Map Location 35,324,390 - 35,487,773
singlet/doubletdoublet
Overlap gene9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal
Upstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
Downstream geneLOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137J03.bB6Ng01-137J03.g
ACCDH937057DH937058
length1,155429
definitionDH937057|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J03, 5' end.DH937058|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,324,390 - 35,325,541)(35,487,345 - 35,487,773)
sequence
gaattctatataagatatgtaattgaacgctttcatgtatttggtatgtt
tttcttcataacaaaagttactctgtgagggctggtgagatggctcagca
ggtaagagcgcccgactgctcttccgaaggtcctgagttcaaatcccagc
aaccacatggtggctcacaaccatccctccctcttctggggtgtctgaag
acagctacagtgtacttacatataataataaataaatctttaaaaaaaaa
gctactttgttgtgctgtcagtagtaacaaaaatattattggttataaaa
tatgctactttagattttaaaaaaactgagaaataaaacatctccaatta
aactacatcaacaagtggaagacattgtggttttaaaagattttctaaaa
catacgtctacaaattgatgaaatgcattttaatgaattgaggaagacaa
aataacagcatacaggcaaacaggttggaatgttgaattttctaggtttt
taatgtataatcacatttgtttagcacagtctctaaatagccacagtatg
aatgttgaattgcaaaaataaaaaataaaaaagcaaagcagtacagttga
ctgcatataaacatataaagcaaacaaaagggagtaacttatgattcagt
catataaagtttagaagaaataccaccattaagtcacatgtttggattta
ttttgcaaataaaaaaattagcttttggcagttgcgtataccatcagatg
tgtgatgacaaggaaaagctgaatttttggacattaacgcggttttgtct
ttggagacgcggcatgaggcaatctcagaatcccagccttgcatcagaag
aatgtctgctgctctcccggaagctgaacaatagtgcttgttgcttatgg
gggccatccaggaaaagccagctgcggatttcgtctagtactattaattg
cttccgcttgtatataaaattggaagaattgggttgctttagtgtcggaa
aaggatatcttgctcacagcttcctgtttcctcctcaaaggcttccactg
gagctcttggcctggaatccgatgcattggaataccctgtagtgaagaac
aacggcttttcatttacaggtttcttatctccatctatgtgtcacctctc
tggag
ggacacaaatcaaccggaccgggtttggaaaagagaagtcaaatcaagta
gccggagaagaactcaaaaggcaaaattaagaggtgggaagggaaagagt
ttcttgcgatcctccggtgcccaacttccttagaagccaggtgagcaacg
agcctcgcgccgcccctgccgcctccacccgccccaactcactccgggcc
taggcagccgcccgagacctcacttaccctcggcgcctggcgggtgcttt
ggcctcgggccgcctccgcctctccggctcccaacggcccgcgggcgggc
gcgggagccccgcgcgagagaccagtgccgaccggtgccaccgagagggg
cgaggggctctgctgccgtcacagtccgcggctccgcttcggtaaatagg
aagctcgggcgacagggggggtggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_35324390_35325541
seq2: B6Ng01-137J03.b_45_1199

seq1  GAATTCTATATAAGATATGTAATTGAA-GCTTTCATGTATTTGGTATGTT  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTATATAAGATATGTAATTGAACGCTTTCATGTATTTGGTATGTT  50

seq1  TTTCTTCATAACAAAAGTTACTCTGTGAGGGCTGGTGAGATGGCTCAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATAACAAAAGTTACTCTGTGAGGGCTGGTGAGATGGCTCAGCA  100

seq1  GGTAAGAGCGCCCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCGCCCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGC  150

seq1  AACCACATGGTGGCTCACAACCATCCCTCCCTCTTCTGGGGTGTCTGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCATCCCTCCCTCTTCTGGGGTGTCTGAAG  200

seq1  ACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAAAA  250

seq1  GCTACTTTGTTGTGCTGTCAGTAGTAACAAAAATATTATTGGTTATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTGTTGTGCTGTCAGTAGTAACAAAAATATTATTGGTTATAAAA  300

seq1  TATGCTACTTTAGATTTTAAAAAAACTGAGAAATAAAACATCTCCAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTACTTTAGATTTTAAAAAAACTGAGAAATAAAACATCTCCAATTA  350

seq1  AACTACATCAACAAGTGGAAGACATTGTGGTTTTAAAAGATTTTCTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATCAACAAGTGGAAGACATTGTGGTTTTAAAAGATTTTCTAAAA  400

seq1  CATACGTCTACAAATTGATGAAATGCATTTTAATGAATTGAGGAAGACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTCTACAAATTGATGAAATGCATTTTAATGAATTGAGGAAGACAA  450

seq1  AATAACAGCATACAGGCAAACAGGTTGGAATGTTGAATTTTCTAGGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCATACAGGCAAACAGGTTGGAATGTTGAATTTTCTAGGTTTT  500

seq1  TAATGTATAATCACATTTGTTTAGCACAGTCTCTAAATAGCCACAGTATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATAATCACATTTGTTTAGCACAGTCTCTAAATAGCCACAGTATG  550

seq1  AATGTTGAATTGCAAAAATAAAAAATAAAAAAGCAAAGCAGTACAGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAATTGCAAAAATAAAAAATAAAAAAGCAAAGCAGTACAGTTGA  600

seq1  CTGCATATAAACATATAAAGCAAACAAAAGGGAGTAACTTATGATTCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATAAACATATAAAGCAAACAAAAGGGAGTAACTTATGATTCAGT  650

seq1  CATATAAAGTTTAGAAGAAATACCACCATTAAGTCACATGTTTGGA-TTA  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATATAAAGTTTAGAAGAAATACCACCATTAAGTCACATGTTTGGATTTA  700

seq1  TTTTGCAAATAAAAAAATTAGCTTTTGGCAGTTGCGTATACCATCAGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAATAAAAAAATTAGCTTTTGGCAGTTGCGTATACCATCAGATG  750

seq1  TGTGATGACAAGGAAAAGCTGAA-TTTTGGACATTAACGCGGTTTTGTCT  797
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGATGACAAGGAAAAGCTGAATTTTTGGACATTAACGCGGTTTTGTCT  800

seq1  TTGGAGACGCGGCATGAGGCAATCCCAGAATCCCAGCCTTGCATCAGAAG  847
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGGAGACGCGGCATGAGGCAATCTCAGAATCCCAGCCTTGCATCAGAAG  850

seq1  AATGTCTGCTGCTCTCCCGGAAGCTGAACAATAGTGCTTGTTGCTTAT-G  896
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTCTGCTGCTCTCCCGGAAGCTGAACAATAGTGCTTGTTGCTTATGG  900

seq1  GGGCCAT-CAGGAAAAGCCAGCTGCGGATTTCGTTCTAGTACCATTAATT  945
      ||||||| ||||||||||||||||||||||||| |||||||| |||||||
seq2  GGGCCATCCAGGAAAAGCCAGCTGCGGATTTCG-TCTAGTACTATTAATT  949

seq1  GCTTCCGC-TGTATATAAAATTGAAAGAATTGGG-TGCTTTAGTGCGGAA  993
      |||||||| |||||||||||||| |||||||||| ||||||||||  | |
seq2  GCTTCCGCTTGTATATAAAATTGGAAGAATTGGGTTGCTTTAGTGTCGGA  999

seq1  AAAGGATATCCTGCTACACAGC-TCCTGTTTCCT-CTCAAAGGCTATCAC  1041
      |||||||||| |||| |||||| ||||||||||| ||||||||||  |||
seq2  AAAGGATATCTTGCT-CACAGCTTCCTGTTTCCTCCTCAAAGGCTTCCAC  1048

seq1  T-GAGCTCTTTGCCCTGAATTCGAATGCATTGGATTATCCTGTGATGAAA  1090
      | |||||||| |||  |||| || |||||||||| || |||||  |||| 
seq2  TGGAGCTCTTGGCCTGGAATCCG-ATGCATTGGAATACCCTGTAGTGAAG  1097

seq1  GACCAAACGGCTTTTCATTTTTACA-GTCTCTTATCTCCTACTTATGTGG  1139
       ||  ||||||||||||  |||||| || |||||||||| |  |||||| 
seq2  AAC--AACGGCTTTTCA--TTTACAGGTTTCTTATCTCC-ATCTATGTGT  1142

seq1  CACCTCTCTGGAG  1152
      |||||||||||||
seq2  CACCTCTCTGGAG  1155

seq1: chr14_35487345_35487773
seq2: B6Ng01-137J03.g_76_504 (reverse)

seq1  ACCCCCCACCCCCCCTGTCGCCCGAGCTTCCTATTTACCGAAGCGGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCACCCCCCCTGTCGCCCGAGCTTCCTATTTACCGAAGCGGAGCC  50

seq1  GCGGACTGTGACGGCAGCAGAGCCCCTCGCCCCTCTCGGTGGCACCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACTGTGACGGCAGCAGAGCCCCTCGCCCCTCTCGGTGGCACCGGTC  100

seq1  GGCACTGGTCTCTCGCGCGGGGCTCCCGCGCCCGCCCGCGGGCCGTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGTCTCTCGCGCGGGGCTCCCGCGCCCGCCCGCGGGCCGTTGGG  150

seq1  AGCCGGAGAGGCGGAGGCGGCCCGAGGCCAAAGCACCCGCCAGGCGCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAGAGGCGGAGGCGGCCCGAGGCCAAAGCACCCGCCAGGCGCCGA  200

seq1  GGGTAAGTGAGGTCTCGGGCGGCTGCCTAGGCCCGGAGTGAGTTGGGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGTGAGGTCTCGGGCGGCTGCCTAGGCCCGGAGTGAGTTGGGGCG  250

seq1  GGTGGAGGCGGCAGGGGCGGCGCGAGGCTCGTTGCTCACCTGGCTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGCGGCAGGGGCGGCGCGAGGCTCGTTGCTCACCTGGCTTCTAA  300

seq1  GGAAGTTGGGCACCGGAGGATCGCAAGAAACTCTTTCCCTTCCCACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGGCACCGGAGGATCGCAAGAAACTCTTTCCCTTCCCACCTCT  350

seq1  TAATTTTGCCTTTTGAGTTCTTCTCCGGCTACTTGATTTGACTTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCCTTTTGAGTTCTTCTCCGGCTACTTGATTTGACTTCTCTTT  400

seq1  TCCAAACCCGGTCCGGTTGATTTGAGTCC  429
      |||||||||||||||||||||||| ||||
seq2  TCCAAACCCGGTCCGGTTGATTTGTGTCC  429