BAC Information

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BAC

Clone NameB6Ng01-138H20
Chromosome14 (Build37)
Map Location 120,869,094 - 120,901,852
singlet/doubletdoublet
Overlap geneRap2a
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2
Downstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138H20.bB6Ng01-138H20.g
ACCDH937737DH937738
length2741,147
definitionDH937737|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H20, 5' end.DH937738|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,869,094 - 120,869,368)(120,900,701 - 120,901,852)
sequence
aggtcttcaggcttggtaatagcaagtgcctttaacctgtgactgagccg
tccatatcattggatctgcgctcaaatttaccaagacacacaatagagca
aaatacagttaaaataaagagggggtagggtgggaaacagatgttgggac
agagggagaaaagagagagaaaggaggtagggggagaaagattggggggg
aggtctactgtttatgccatcatgtgtcagacacatcaaattttcatcat
tctggtctcaggaccattgtggta
gaattcatgaagaggaaaagcatcaaaccaaagcccaccctgttccacat
ggaatcagccagctgaaaggaaaagtgcttgatttttttacagtttaagg
attaaactacagcacatttaggaaatgggatagtgggtaggctcccccac
ataagagctgtgcaatttcattgtcctgtcaagatggctctccctactta
ccctaaagccaagtatatcccgaatggacacttaggctttcctttggcaa
gagaacaaactgataccaccatgggggtctgtctattccaggcagcaaaa
cagaggactggaaggtaagtgggaacacccagtgtggtgctcgcatcagt
agttctagcagaaaggagtcaggctggggtatgactgagtctgggaacag
acctaactctcaaagccagagggctggaggcagctcagttggtacagtgc
ctgctgtaggcttaagaccccagatctaatcgccagaccccacagcaaag
agccaggcacagttgcacgcgcttttcatctcagctctggggcagcacta
gggggaggctttctgtggctcactggccagccaatctatcttaactcacg
gacaacaggccaatgagagaccctgcttcagaagcggatggcggtcctca
ggaggatgtgcaagcttgtcctccggaatccacaaatgcaggcccaggca
agaacacaccaacgtgtgtataaggatagaggagtgggactgtatcaggg
caggtttagaatgcggaccgcatcattctgcttcttctggggaccgcagg
cagctctgatctgctccagaggcacctgggtgtccctgtggctgccacac
atgatgtgaggccttcgcatcctttcattcaggactctcttgaacacact
ttttgtgtactcgctggcctctgggggcacagagggtattgggtgatgga
gctgcagacacagacccattgccagcttgcacctgggaaatgagcagcct
gcagtgagctgtcactgccaccatatcagcatcagcttctgatctgtcct
acatcaaggaagtgggtgttttcccttctggcttgggggacacatgccaa
cagagcacagatgtacatgtcttgccttgttaatgaagcatttacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_120869094_120869368
seq2: B6Ng01-138H20.b_51_324

seq1  AGGTCTTCAGGCTTGGTAATAGCAAGTGCCTTTAACCTGTGACTGAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCAGGCTTGGTAATAGCAAGTGCCTTTAACCTGTGACTGAGCCG  50

seq1  TCCATATCATTGGATCTGCGCTCAAATTTACCAAGACACACAATAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCATTGGATCTGCGCTCAAATTTACCAAGACACACAATAGAGCA  100

seq1  AAATACAGTTAAAATAAAGAGGGGGTAGGGTGGGAAACAGATGTTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTTAAAATAAAGAGGGGGTAGGGTGGGAAACAGATGTTGGGAC  150

seq1  AGAGGGAGAAAAGAGAGAGAAAGGAGGTAGGGGGAGAAAGATTGGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAAAAGAGAGAGAAAGGAGGTAGGGGGAGAAAGATTGGGGGGG  200

seq1  AGGTCTACTGTTTATGCCATCAGGTGTCAGACACATCAAATTTATCATCA  250
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  AGGTCTACTGTTTATGCCATCATGTGTCAGACACATCAAATTT-TCATCA  249

seq1  TTCTGGTCTCTGGACCACTGTGGTA  275
      |||||||||| |||||| |||||||
seq2  TTCTGGTCTCAGGACCATTGTGGTA  274

seq1: chr14_120900701_120901852
seq2: B6Ng01-138H20.g_66_1212 (reverse)

seq1  TTGTAAATTGCTTCATTAACAA-GCAAGACATGT-CATCTTGTGCTCTGT  48
      ||||||| |||||||||||||| ||||||||||| |||| ||||||||||
seq2  TTGTAAA-TGCTTCATTAACAAGGCAAGACATGTACATC-TGTGCTCTGT  48

seq1  TGGCATGTGTGCCCCCAGACCAGAAGGGGAAAACCACCACATCCTTGAGT  98
      |||||||||| ||||||  |||||| ||||||||  |||| ||||||| |
seq2  TGGCATGTGT-CCCCCAAGCCAGAA-GGGAAAACACCCACTTCCTTGA-T  95

seq1  GTAGGACAGATCAGAAGCTGATGCTGATATGGGTGGCAGTGACAGCTCAC  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGGACAGATCAGAAGCTGATGCTGATAT-GGTGGCAGTGACAGCTCAC  144

seq1  TGCCAGGCTGCTCATTTCCCCAGGTGCAAGCTGGCAATGGGTCTGTGTCC  198
      || |||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TG-CAGGCTGCTCATTT-CCCAGGTGCAAGCTGGCAATGGGTCTGTGT-C  191

seq1  TGCAGCTCCATCACCC-ATACCCTCTGTGCCCCCAGAGGCCAGCGAGTAC  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCAGCTCCATCACCCAATACCCTCTGTGCCCCCAGAGGCCAGCGAGTAC  241

seq1  AC-AAAAGTGTGTTCAAGAGAGTCCTGAATGAAAGGATGCGAAGGCCTCA  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTGTGTTCAAGAGAGTCCTGAATGAAAGGATGCGAAGGCCTCA  291

seq1  CATCATGTGTGGCAGCCACAGGGACACCCAGGTGCCTCTGGAGCAGATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTGTGGCAGCCACAGGGACACCCAGGTGCCTCTGGAGCAGATCA  341

seq1  GAGCTGCCTGCGGTCCCCAGAAGAAGCAGAATGATGCGGTCCGCATTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCTGCGGTCCCCAGAAGAAGCAGAATGATGCGGTCCGCATTCTA  391

seq1  AACCTGCCCTGATACAGTCCCACTCCTCTATCCTTATACACACGTTGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCCTGATACAGTCCCACTCCTCTATCCTTATACACACGTTGGTG  441

seq1  TGTTCTTGCCTGGGCCTGCATTTGTGGATTCCGGAGGACAAGCTTGCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGCCTGGGCCTGCATTTGTGGATTCCGGAGGACAAGCTTGCACA  491

seq1  TCCTCCTGAGGACCGCCATCCGCTTCTGAAGCAGGGTCTCTCATTGGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGAGGACCGCCATCCGCTTCTGAAGCAGGGTCTCTCATTGGCCT  541

seq1  GTTGTCCGTGAGTTAAGATAGATTGGCTGGCCAGTGAGCCACAGAAAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCGTGAGTTAAGATAGATTGGCTGGCCAGTGAGCCACAGAAAGCC  591

seq1  TCCCCCTAGTGCTGCCCCAGAGCTGAGATGAAAAGCGCGTGCAACTGTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTAGTGCTGCCCCAGAGCTGAGATGAAAAGCGCGTGCAACTGTGC  641

seq1  CTGGCTCTTTGCTGTGGGGTCTGGCGATTAGATCTGGGGTCTTAAGCCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTTTGCTGTGGGGTCTGGCGATTAGATCTGGGGTCTTAAGCCTA  691

seq1  CAGCAGGCACTGTACCAACTGAGCTGCCTCCAGCCCTCTGGCTTTGAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCACTGTACCAACTGAGCTGCCTCCAGCCCTCTGGCTTTGAGAG  741

seq1  TTAGGTCTGTTCCCAGACTCAGTCATACCCCAGCCTGACTCCTTTCTGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTGTTCCCAGACTCAGTCATACCCCAGCCTGACTCCTTTCTGCT  791

seq1  AGAACTACTGATGCGAGCACCACACTGGGTGTTCCCACTTACCTTCCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACTGATGCGAGCACCACACTGGGTGTTCCCACTTACCTTCCAGT  841

seq1  CCTCTGTTTTGCTGCCTGGAATAGACAGACCCCCATGGTGGTATCAGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTTGCTGCCTGGAATAGACAGACCCCCATGGTGGTATCAGTTT  891

seq1  GTTCTCTTGCCAAAGGAAAGCCTAAGTGTCCATTCGGGATATACTTGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTGCCAAAGGAAAGCCTAAGTGTCCATTCGGGATATACTTGGCT  941

seq1  TTAGGGTAAGTAGGGAGAGCCATCTTGACAGGACAATGAAATTGCACAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTAAGTAGGGAGAGCCATCTTGACAGGACAATGAAATTGCACAGC  991

seq1  TCTTATGTGGGGGAGCCTACCCACTATCCCATTTCCTAAATGTGCTGTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTGGGGGAGCCTACCCACTATCCCATTTCCTAAATGTGCTGTAG  1041

seq1  TTTAATCCTTAAACTGTAAAAAAATCAAGCACTTTTCCTTTCAGCTGGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTTAAACTGTAAAAAAATCAAGCACTTTTCCTTTCAGCTGGCT  1091

seq1  GATTCCATGTGGAACAGGGTGGGCTTTGGTTTGATGCTTTTCCTCTTCAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATGTGGAACAGGGTGGGCTTTGGTTTGATGCTTTTCCTCTTCAT  1141

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1147