BAC Information

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BAC

Clone NameB6Ng01-138K05
Chromosome14 (Build37)
Map Location 116,335,381 - 116,493,934
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K05.bB6Ng01-138K05.g
ACCDH937841DH937842
length1,1011,109
definitionDH937841|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K05, 5' end.DH937842|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,335,381 - 116,336,488)(116,492,811 - 116,493,934)
sequence
gaattccattcctattaattgagatccattatagctgtgataatggagct
gaacagaaaccatgacaaatactaaagtacttaatttttcaaaattactg
gaccattagatttcaaatagcttcacaaacagaaaaccatgtggaggtat
ggatttattaattgggcccacttaatcattccacattgtaagtaaacatc
aaatactacacagtactccataaagatatacagtcaatagacaactgaaa
gaactaaaattgatctaagccagagacaaaatgtgttgtagtgatattta
aacttattgtaaacataacatataattcttctccaaagttaatagcatat
taatataaggtaaaaagaagattcctaatttcttaaaaacataaagatat
acttggtttgaaattatttttcatttactagcattaccataaaattatat
tctaatcctaatagtgaataaaatactaatcataggaaataaaataaatg
gaatattttgtatgctaacatgagtatagtacaaaaatttgttttctttt
ccttttcttttcatttcttttcttttctctctttcacttcctttgttatt
agatgctgggtacctatctgtctcaggattttgtgcatgctataaactgt
cttaatattgacctataggtttatctccatttcaaaaggtattcaaaaag
gattatcacaaactgttttaagaaagatggaccaaaggaaaaggagagat
gaacagggagaagttagaagtagagagatgaacaagactttggatatagt
atttgtttctagtacttttcctaagctctgccttactggcttttgtcacc
agaggagacaagtagaatagaacagtaattaaccaggaatgacggacttg
gaggataatagacctggaaaatatcttggaggaggtaaatcttgtatgca
ttttgagtcctaaaagtgcttttagctttggaagtggggactaattagaa
atacttgcctttataattcaatcctcatttaattccctgcatgtgaatga
aaagatgctcaagtcccagagtctacctatgatagtcatatctggctcct
a
gaattctctattgactatcaggtgtttgtttatgtaatgttgatttatgc
ataaatgtatatatcaccttcttgctatgattttattaggctgagaaaaa
ttttgaccaaggtggcaaaacaaaaccaaaaagaaaggtcaggcagtggt
ggcacatgcctttaatcccagcactcgggaggcagaggcaggcagatttc
tgagtttgaggccagcctggtctacagagtgagttccaggccagcctggg
ctacacaaagaaaccctgtctcaaaacaaaacaaaacaaaacaaaacaaa
acaaaacaaaacaaaaacaaaaaatgaacaaaagaaagaaaagaaagaac
agaaagaaaagaaaagggaagaaggaatgagaaaagatttcttcaaagtt
agctgaaatgttatggtcatattcatatataaatatggaaatgatattga
agagaaatcagaatatccatggcttagtcttgcctttgtccttactagga
taactttccccctctttggtaacctgggtgggctccctgaaggtgtttaa
attatatgtgggttttaagaaaaacttttgggttagaaagcccatgagtc
cttacatggctttgccactgtgtacattttcacaaattactgagtactcc
tggtggtcatgagaatatcctttcaaatttcaatttttttgataacattt
taattgttgaatacctacattgagataatgggtcaccttgtaaaatctaa
tatgaataattatacaaaaatgacagaataaagccaagctaatcactagt
aaatgaagttcatttctcaaacctttctatattaaaatgcatagtctaga
atttgtgttagttcaacatcatgcttcagtaatgccaacttcttgagcaa
ctaagtaagttgtgaactcaaggactctttggattacagggtgaatttaa
gctagtgtgggaacttggggatctgtctgtctgtctcatattataaagta
aatgacagcagagcacaggttcatagtagaatgcttaatatggtgtaaga
gacggatattctcagtcatatgttcactcgctaagtagttgctggcgagc
attaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116335381_116336488
seq2: B6Ng01-138K05.b_41_1141

seq1  GAATTCCATTCCTATTAATTGAGATCCATTATAGCTGTGATAATGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTATTAATTGAGATCCATTATAGCTGTGATAATGGAGCT  50

seq1  GAACAGAAACCATGACAAATACTAAAGTACTTAATTTTTCAAAATTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAACCATGACAAATACTAAAGTACTTAATTTTTCAAAATTACTG  100

seq1  GACCATTAGATTTCAAATAGCTTCACAAACAGAAAACCATGTGGAGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAGATTTCAAATAGCTTCACAAACAGAAAACCATGTGGAGGTAT  150

seq1  GGATTTATTAATTGGGCCCACTTAATCATTCCACATTGTAAGTAAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATTAATTGGGCCCACTTAATCATTCCACATTGTAAGTAAACATC  200

seq1  AAATACTACACAGTACTCCATAAAGATATACAGTCAATAGACAACTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTACACAGTACTCCATAAAGATATACAGTCAATAGACAACTGAAA  250

seq1  GAACTAAAATTGATCTAAGCCAGAGACAAAATGTGTTGTAGTGATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAATTGATCTAAGCCAGAGACAAAATGTGTTGTAGTGATATTTA  300

seq1  AACTTATTGTAAACATAACATATAATTCTTCTCCAAAGTTAATAGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTGTAAACATAACATATAATTCTTCTCCAAAGTTAATAGCATAT  350

seq1  TAATATAAGGTAAAAAGAAGATTCCTAATTTCTTAAAAACATAAAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAGGTAAAAAGAAGATTCCTAATTTCTTAAAAACATAAAGATAT  400

seq1  ACTTGGTTTGAAATTATTTTTCATTTACTAGCATTACCATAAAATTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTTGAAATTATTTTTCATTTACTAGCATTACCATAAAATTATAT  450

seq1  TCTAATCCTAATAGTGAATAAAATACTAATCATAGGAAATAAAATAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCTAATAGTGAATAAAATACTAATCATAGGAAATAAAATAAATG  500

seq1  GAATATTTTGTATGCTAACATGAGTATAGTACAAAAATTTGTTTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTGTATGCTAACATGAGTATAGTACAAAAATTTGTTTTCTTTT  550

seq1  CCTTTTCTTTTCATTTCTTTTCTTTTCTCTCTTTCACTTCCTTTGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTTCATTTCTTTTCTTTTCTCTCTTTCACTTCCTTTGTTATT  600

seq1  AGATGCTGGGTACCTATCTGTCTCAGGATTTTGTGCATGCTATAAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGGTACCTATCTGTCTCAGGATTTTGTGCATGCTATAAACTGT  650

seq1  CTTAATATTGACCTATAGGTTTATCTCCATTTCAAAAGGTATTCAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTGACCTATAGGTTTATCTCCATTTCAAAAGGTATTCAAAAAG  700

seq1  GATTATCACAAACTGTTTTAAGAAAGATGGACCAAAGGAAAAGGAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCACAAACTGTTTTAAGAAAGATGGACCAAAGGAAAAGGAGAGAT  750

seq1  GAACAGGGAGAAGTTAGAAGTAGAGAGATGAACAAGACTTTGGATATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGAGAAGTTAGAAGTAGAGAGATGAACAAGACTTTGGATATAGT  800

seq1  ATTTGTTTCTAGTACTTTTCCTAAGCTCTGCCTTACTGGCTTTTGTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTCTAGTACTTTTCCTAAGCTCTGCCTTACTGGCTTTTGTCACC  850

seq1  AGAGGAGACAAGTAGAATAGAACAGTAATTAACCAGGAATGAAGGGACTT  900
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  AGAGGAGACAAGTAGAATAGAACAGTAATTAACCAGGAATG-ACGGACTT  899

seq1  GGAGGATAATAGACCTGGAAAATATCTTGGAGGAGGTAAATCTTGTATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATAATAGACCTGGAAAATATCTTGGAGGAGGTAAATCTTGTATGC  949

seq1  ATTTTGAGTCCTAAAAGTGCTTTTAGCTTTGGAAGTGGGGACTAATTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGTCCTAAAAGTGCTTTTAGCTTTGGAAGTGGGGACTAATTAGA  999

seq1  AATACTTGCCTTTATAATTCAAATCCTCATTTAATATTCCCTGCATGTGG  1050
      |||||||||||||||||||| ||||||||||||  ||||||||||||| |
seq2  AATACTTGCCTTTATAATTC-AATCCTCATTTA--ATTCCCTGCATGT-G  1045

seq1  AATGAATAGATGCTCAAGTCCCAGAGTCTACCTATGATAGTCATATGCTG  1100
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AATGAAAAGATGCTCAAGTCCCAGAGTCTACCTATGATAGTCATAT-CTG  1094

seq1  GCTACCTA  1108
      ||| ||||
seq2  GCT-CCTA  1101

seq1: chr14_116492811_116493934
seq2: B6Ng01-138K05.g_67_1175 (reverse)

seq1  TTATTTAATGCTCTGCAAGACAAACCTTACTTATACGAGTGAACATATGA  50
      ||||||||||||| || || |||    ||||||  |||||||||||||||
seq2  TTATTTAATGCTC-GCCAG-CAA---CTACTTA-GCGAGTGAACATATGA  44

seq1  CTGTGAAATTATCCCGGTCTCTTACA-CATATTAAGCATTCTACTATGGA  99
      ||| |||  |||||  |||||||||| ||||||||||||||||||||| |
seq2  CTGAGAA--TATCC--GTCTCTTACACCATATTAAGCATTCTACTATGAA  90

seq1  CCTGTGCTCTTGGCTGTCATTTTACTTTATATTATGAGACAGACAGACAG  149
      ||||||||||  ||||||| ||||||||||| ||||||||||||||||||
seq2  CCTGTGCTCT--GCTGTCA-TTTACTTTATAATATGAGACAGACAGACAG  137

seq1  ATTCCCAAGTTCCCACAACTAGCTTTAAATTCACCCTGTAATCCAAAGAG  199
      || ||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  ATCCCCAAGTTCCCAC-ACTAGC-TTAAATTCACCCTGTAATCCAAAGAG  185

seq1  TCCTTGAGTTCACAACTTACCTTAGTTGCTCAAGAAGTTGGCATTACTGA  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCTTGAGTTCACAACTTA-CTTAGTTGCTCAAGAAGTTGGCATTACTGA  234

seq1  AGCATGATGTTGAACTAACACAAATTCTAGACTATGCATTTTAATATAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATGTTGAACTAACACAAATTCTAGACTATGCATTTTAATATAGA  284

seq1  AAGGTTTGAGAAATGAACTTCATTTACTAGTGATTAGCTTGGCTTTATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGAGAAATGAACTTCATTTACTAGTGATTAGCTTGGCTTTATTC  334

seq1  TGTCATTTTTGTATAATTATTCATATTAGATTTTACAAGGTGACCCATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTTGTATAATTATTCATATTAGATTTTACAAGGTGACCCATTA  384

seq1  TCTCAATGTAGGTATTCAACAATTAAAATGTTATCAAAAAAATTGAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTAGGTATTCAACAATTAAAATGTTATCAAAAAAATTGAAATT  434

seq1  TGAAAGGATATTCTCATGACCACCAGGAGTACTCAGTAATTTGTGAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGATATTCTCATGACCACCAGGAGTACTCAGTAATTTGTGAAAAT  484

seq1  GTACACAGTGGCAAAGCCATGTAAGGACTCATGGGCTTTCTAACCCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGTGGCAAAGCCATGTAAGGACTCATGGGCTTTCTAACCCAAAA  534

seq1  GTTTTTCTTAAAACCCACATATAATTTAAACACCTTCAGGGAGCCCACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTAAAACCCACATATAATTTAAACACCTTCAGGGAGCCCACCC  584

seq1  AGGTTACCAAAGAGGGGGAAAGTTATCCTAGTAAGGACAAAGGCAAGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACCAAAGAGGGGGAAAGTTATCCTAGTAAGGACAAAGGCAAGACT  634

seq1  AAGCCATGGATATTCTGATTTCTCTTCAATATCATTTCCATATTTATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGATATTCTGATTTCTCTTCAATATCATTTCCATATTTATATA  684

seq1  TGAATATGACCATAACATTTCAGCTAACTTTGAAGAAATCTTTTCTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGACCATAACATTTCAGCTAACTTTGAAGAAATCTTTTCTCATT  734

seq1  CCTTCTTCCCTTTTCTTTTCTTTCTGTTCTTTCTTTTCTTTCTTTTGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCCTTTTCTTTTCTTTCTGTTCTTTCTTTTCTTTCTTTTGTTC  784

seq1  ATTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT  834

seq1  TTTGAGACAGGGTTTCTTTGTGTAGCCCAGGCTGGCCTGGAACTCACTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTTTCTTTGTGTAGCCCAGGCTGGCCTGGAACTCACTCT  884

seq1  GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCG  934

seq1  AGTGCTGGGATTAAAGGCATGTGCCACCACTGCCTGACCTTTCTTTTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCATGTGCCACCACTGCCTGACCTTTCTTTTTGG  984

seq1  TTTTGTTTTGCCACCTTGGTCAAAATTTTTCTCAGCCTAATAAAATCATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGCCACCTTGGTCAAAATTTTTCTCAGCCTAATAAAATCATA  1034

seq1  GCAAGAAGGTGATATATACATTTATGCATAAATCAACATTACATAAACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGGTGATATATACATTTATGCATAAATCAACATTACATAAACAA  1084

seq1  ACACCTGATAGTCAATAGAGAATTC  1124
      |||||||||||||||||||||||||
seq2  ACACCTGATAGTCAATAGAGAATTC  1109