BAC Information

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BAC

Clone NameB6Ng01-139I20
Chromosome14 (Build37)
Map Location 81,836,178 - 81,952,404
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672828, LOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I20.bB6Ng01-139I20.g
ACCDH938506DH938507
length1,0621,100
definitionDH938506|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I20, 5' end.DH938507|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,951,329 - 81,952,404)(81,836,178 - 81,837,298)
sequence
gaattcattcatatcttattgtggtgtccttatttcattcagttctttat
gtttttgttcctggggtatattcacatctttcaatttctgaatgtaggta
tgttcattcctttaaactatttgtctgaaatttcttccaactcaatagga
cctttattaaggagtttattactgcttttattttttgtaattataatata
gtttcattttatcccttcccctttctcctaccaaactttatctgatactt
cccttgttttctttcaaattcatgacatttttcattaattgttgtttcat
acatatatatatacatatatatgcatgtaaaatgaatgtatatgtatgta
tacatgtgtactcttaaatacataaatacataaacacaattatgtttttg
tcatgttaattttttctggagggtctagttcagctgaagttatttgtttc
aagaatttctttttttttttttttaatttactgtttcatcttttcttcca
gtgaaagtatttataggattctggaagggaacaagttttaatacgccaaa
tcttctatctatagtctctctctaagagtcaacttctgtcttgtgcatat
aggtagattcctagaatagtttctgttggactcggatataggaaaccctg
tagtctaggacctagaaagagtcctaggccacatttatgaggctaagcag
gggtggatgaagtcactcattcattcaattctggagaacatgtgggctgt
gcttctggatcacaactctttgtccttttatgtgagcctagtacggatag
atgcctaatttctgtgcatatttataacctgaatctttatagggtttata
cctttattatgcttgccttttaaaatgtagaaatatacaatatataatgt
acccctatagatttagaagaaatgatcagtttaacttttcatttacatac
cattattatatgacagtgaatattttacgaaacttaatatttcacatgag
actgtgctacagttctgctttagttctttctcaagctatgtgggagttaa
tatcatcataaa
gaattcattacttttgctttctgttttttagaaagtgacccaaagaaata
agagtaatggagttaagggaagcctttctgaaaaggatgttgtacctcag
gaagttatcctgaatcacatgaacaggctgggaggtttttaagaagcttt
ttatcctccgttctttttatattctttgtattttcaaatgtctactgagc
ctctcctctctgctaggcatttcagtggggactaagatgaattagcctag
aaaggaagcgtcttgctgtctttatgcaattcggttagagagaagtctgg
gaggaattttcaataaaatgtcatatctagaatactaaagggtgttgagt
tgcaacagaaaaaaaaaaaagcaaaggaggcctctgtcctaagttagaca
ctattccccacaaacttatgtccctctggaatttcaggatgtaactttac
ttgggaatagtatataaactatattatatttcattttgttttgacttatt
gactcagactcttatgtaagtaggactgttccagagaatcctcctcactc
tgcttccacatcatgagatagtaggtgtgctctcttggattagggatttt
tgtagatgcagccagccagcgggtatatggagagaagcatgggatgtgtc
ctccccatggctggtcgtgggaacacggttggattgaagagtaagtttga
atgatggtctgtagaaacaggaaagagtacatgtcttgaagtaactctat
tgtattatgtttataagcttggctctggaaaattcaggggagtaattaca
tcctggaaaacgaagtaaatgattgttaaggaagagtaaagcttttaaac
ctttcaacatcaggaatccttctatctctaccacccacaccagctctggg
atttagcattcttttacagtcagtcattactttcctcgcagtctccctcc
cacagtttctaatccattcttctatctcccttgtctcaagaggatgtctc
attcctccacccaccgaatctgcgactacaccctcctcggtccttcaggg
ttgagggaaggacttcttctctcactgaggcatgccaggcagtctctact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_81951329_81952404
seq2: B6Ng01-139I20.b_44_1105 (reverse)

seq1  TTTATGATGATTATTAACTCCCACATAGCTTTGAG-AAGGACTAAAGCAA  49
      |||||||||| |||||||||||||||||| ||||| ||| |||||||| |
seq2  TTTATGATGA-TATTAACTCCCACATAGC-TTGAGAAAGAACTAAAGC-A  47

seq1  GAACTGTAGCCACAGTCTCATGTGAAATTATTTAAGTTTTCCGTAAAATA  99
      ||||||||| ||||||||||||||||||   ||||||||  |||||||||
seq2  GAACTGTAG-CACAGTCTCATGTGAAAT--ATTAAGTTT--CGTAAAATA  92

seq1  TTCACTGTTCCATATAATTAATTGGTATGTAAAATGAAAAGTTAAACTGA  149
      ||||||||  ||||||||  | |||||||| |||||||||||||||||||
seq2  TTCACTGT--CATATAAT--AATGGTATGT-AAATGAAAAGTTAAACTGA  137

seq1  TCATTTCCTTCTTAAATCTATAGGGGTACATTATATATTGTATATTTCTA  199
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTT-CTTC-TAAATCTATAGGGGTACATTATATATTGTATATTTCTA  185

seq1  CATTTTAAAAGGCAAGCATAATAAAGGTATAAACCCTATAAAGATTCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAAGGCAAGCATAATAAAGGTATAAACCCTATAAAGATTCAGG  235

seq1  TTATAAATATGCACAGAAATTAGGCATCTATCCGTACTAGGCTCACATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATGCACAGAAATTAGGCATCTATCCGTACTAGGCTCACATAA  285

seq1  AAGGACAAAGAGTTGTGATCCAGAAGCACAGCCCACATGTTCTCCAGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAAGAGTTGTGATCCAGAAGCACAGCCCACATGTTCTCCAGAAT  335

seq1  TGAATGAATGAGTGACTTCATCCACCCCTGCTTAGCCTCATAAATGTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAGTGACTTCATCCACCCCTGCTTAGCCTCATAAATGTGGC  385

seq1  CTAGGACTCTTTCTAGGTCCTAGACTACAGGGTTTCCTATATCCGAGTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTCTTTCTAGGTCCTAGACTACAGGGTTTCCTATATCCGAGTCC  435

seq1  AACAGAAACTATTCTAGGAATCTACCTATATGCACAAGACAGAAGTTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACTATTCTAGGAATCTACCTATATGCACAAGACAGAAGTTGAC  485

seq1  TCTTAGAGAGAGACTATAGATAGAAGATTTGGCGTATTAAAACTTGTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGAGAGACTATAGATAGAAGATTTGGCGTATTAAAACTTGTTCC  535

seq1  CTTCCAGAATCCTATAAATACTTTCACTGGAAGAAAAGATGAAACAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAATCCTATAAATACTTTCACTGGAAGAAAAGATGAAACAGTAA  585

seq1  ATTAAAAAAAAAAAAAAAGAAATTCTTGAAACAAATAACTTCAGCTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAAAAAAAAGAAATTCTTGAAACAAATAACTTCAGCTGAAC  635

seq1  TAGACCCTCCAGAAAAAATTAACATGACAAAAACATAATTGTGTTTATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCTCCAGAAAAAATTAACATGACAAAAACATAATTGTGTTTATGT  685

seq1  ATTTATGTATTTAAGAGTACACATGTATACATACATATACATTCATTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATTTAAGAGTACACATGTATACATACATATACATTCATTTTA  735

seq1  CATGCATATATATGTATATATATATGTATGAAACAACAATTAATGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATATATATGTATATATATATGTATGAAACAACAATTAATGAAAAA  785

seq1  TGTCATGAATTTGAAAGAAAACAAGGGAAGTATCAGATAAAGTTTGGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGAATTTGAAAGAAAACAAGGGAAGTATCAGATAAAGTTTGGTAG  835

seq1  GAGAAAGGGGAAGGGATAAAATGAAACTATATTATAATTACAAAAAATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGGAAGGGATAAAATGAAACTATATTATAATTACAAAAAATAA  885

seq1  AAGCAGTAATAAACTCCTTAATAAAGGTCCTATTGAGTTGGAAGAAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAATAAACTCCTTAATAAAGGTCCTATTGAGTTGGAAGAAATTT  935

seq1  CAGACAAATAGTTTAAAGGAATGAACATACCTACATTCAGAAATTGAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAATAGTTTAAAGGAATGAACATACCTACATTCAGAAATTGAAAG  985

seq1  ATGTGAATATACCCCAGGAACAAAAACATAAAGAACTGAATGAAATAAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATATACCCCAGGAACAAAAACATAAAGAACTGAATGAAATAAGG  1035

seq1  ACACCACAATAAGATATGAATGAATTC  1076
      |||||||||||||||||||||||||||
seq2  ACACCACAATAAGATATGAATGAATTC  1062

seq1: chr14_81836178_81837298
seq2: B6Ng01-139I20.g_67_1166

seq1  GAATTCATTACTTTTGCTTTCTGTTTTTTAGAAAGTGACCCAAAGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTTTTGCTTTCTGTTTTTTAGAAAGTGACCCAAAGAAATA  50

seq1  AGAGTAATGGAGTTAAGGGAAGCCTTTCTGAAAAGGATGTTGTACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATGGAGTTAAGGGAAGCCTTTCTGAAAAGGATGTTGTACCTCAG  100

seq1  GAAGTTATCCTGAATCACATGAACAGGCTGGGAGGTTTTTAAGAAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCCTGAATCACATGAACAGGCTGGGAGGTTTTTAAGAAGCTTT  150

seq1  TTATCCTCCGTTCTTTTTATATTCTTTGTATTTTCAAATGTCTACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCGTTCTTTTTATATTCTTTGTATTTTCAAATGTCTACTGAGC  200

seq1  CTCTCCTCTCTGCTAGGCATTTCAGTGGGGACTAAGATGAATTAGCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCTGCTAGGCATTTCAGTGGGGACTAAGATGAATTAGCCTAG  250

seq1  AAAGGAAGCGTCTTGCTGTCTTTATGCAATTCGGTTAGAGAGAAGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCGTCTTGCTGTCTTTATGCAATTCGGTTAGAGAGAAGTCTGG  300

seq1  GAGGAATTTTCAATAAAATGTCATATCTAGAATACTAAAGGGTGTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTTCAATAAAATGTCATATCTAGAATACTAAAGGGTGTTGAGT  350

seq1  TGCAACAGAAAAAAAAAAAAGCAAAGGAGGCCTCTGTCCTAAGTTAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGAAAAAAAAAAAAGCAAAGGAGGCCTCTGTCCTAAGTTAGACA  400

seq1  CTATTCCCCACAAACTTATGTCCCTCTGGAATTTCAGGATGTAACTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCCACAAACTTATGTCCCTCTGGAATTTCAGGATGTAACTTTAC  450

seq1  TTGGGAATAGTATATAAACTATATTATATTTCATTTTGTTTTGACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATAGTATATAAACTATATTATATTTCATTTTGTTTTGACTTATT  500

seq1  GACTCAGACTCTTATGTAAGTAGGACTGTTCCAGAGAATCCTCCTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGACTCTTATGTAAGTAGGACTGTTCCAGAGAATCCTCCTCACTC  550

seq1  TGCTTCCACATCATGAGATAGTAGGTGTGCTCTCTTGGATTAGGGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCACATCATGAGATAGTAGGTGTGCTCTCTTGGATTAGGGATTTT  600

seq1  TGTAGATGCAGCCAGCCAGCGGGTATATGGAGAGAAGCATGGGATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCAGCCAGCCAGCGGGTATATGGAGAGAAGCATGGGATGTGTC  650

seq1  CTCCCCATGGCTGGTCGTGGGAACACGGTTGGATTGAAGAGTAAGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATGGCTGGTCGTGGGAACACGGTTGGATTGAAGAGTAAGTTTGA  700

seq1  ATGATGGTCTGTAGAAACAGGAAAGAGTACATGTCTTGAAGTAACTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTCTGTAGAAACAGGAAAGAGTACATGTCTTGAAGTAACTCTAT  750

seq1  TGTATTATGTTTATAAGCTTGGCTCTGGAAAATTCAGGGGAGTAATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATGTTTATAAGCTTGGCTCTGGAAAATTCAGGGGAGTAATTACA  800

seq1  TCCTGGAAAACGAAGTAAATGATTGTTAAGGAAGAGTAAAGCTTTTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAAACGAAGTAAATGATTGTTAAGGAAGAGTAAAGCTTTTAAAC  850

seq1  CTTTCAACATCAGGAATCCTTCTATCTCTACCACCCACACCCAGCTCTGG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCAACATCAGGAATCCTTCTATCTCTACCACCCACA-CCAGCTCTGG  899

seq1  GATTTAGCATTCTTTTACAGTCCAGTCATTACCTTCCTCGCAGTCTTCCC  950
      ||||||||||||||||||||| |||||||||| |||||||||||| ||||
seq2  GATTTAGCATTCTTTTACAGT-CAGTCATTACTTTCCTCGCAGTC-TCCC  947

seq1  TCCCACAGTTTCTAATCCCATTCCTTCTAATCTCCCCCTTGTCTCCAAGA  1000
      |||||||||||||||| ||||| ||||||   || ||||||||| |||||
seq2  TCCCACAGTTTCTAAT-CCATT-CTTCTA---TCTCCCTTGTCT-CAAGA  991

seq1  GGATGTCTCCATTCCTCCACCCCACCGATTCTGCCAGACCTACACCCTCC  1050
      |||||||| |||||||||| |||||||| ||||| |   |||||||||||
seq2  GGATGTCT-CATTCCTCCA-CCCACCGAATCTGCGA---CTACACCCTCC  1036

seq1  CCGGGCCCTCAAGTGTTTTGAGGGTAAGGAGCTTCTTCTCTCACTGAGGC  1100
       ||| || |||   |  ||||||| ||||| |||||||||||||||||||
seq2  TCGGTCCTTCA---GGGTTGAGGG-AAGGA-CTTCTTCTCTCACTGAGGC  1081

seq1  ATGGCCAGGCAGTCCTCTACT  1121
      || |||||||||| |||||||
seq2  AT-GCCAGGCAGT-CTCTACT  1100