BAC Information

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BAC

Clone NameB6Ng01-139M15
Chromosome14 (Build37)
Map Location 119,618,849 - 119,783,660
singlet/doubletdoublet
Overlap geneHs6st3, LOC619601
Upstream geneSox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneEG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139M15.bB6Ng01-139M15.g
ACCDH938682DH938683
length1,1391,082
definitionDH938682|Mus musculus domesticus DNA, BAC clone: B6Ng01-139M15, 5' end.DH938683|Mus musculus domesticus DNA, BAC clone: B6Ng01-139M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,782,491 - 119,783,660)(119,618,849 - 119,619,961)
sequence
gaattcagtgaacaaaccaacatgcaatggaccactcactatgtttaaaa
tgtaaccaatcaataacaaaggtaaaagcagcagcaaggcatggatctat
aaatattcatcaagcaagacagtgaggtaaaacaacaacaaactcataag
ctctggtgtcccagctctgggtcagctaccaaccatttgaccttgggaaa
atccttagactctgagatccagtttcatcactgcggatgaggatacctac
cttccagagtataagtacctgagcatatcttcccttcagtttattccaat
tccaagtcaaactaatgactaagaaagaattgtatcgattgtgaagaatc
aatttgacaaattgcaattttctctctgccaaatgaaaatacagcctacc
tcgggacagccttctacagttcttttgaaaattagagcattggtatgttg
aaagatcattttgatggcatcctcctcatccacatacctatataccacat
cctggaggtacaggtaaaacctaaagtagaatatacatagcaaaagatcc
cgtaactaagaagatgcagggaagaaataggagggtgaaaacataaacta
aagctaggcgttggaatgaaaagttaatgggctgtaatcgggagacaaat
ataccctatcaccacaaagacacaaatgccctctctctgaacctgacaat
gtgctgtactatatgacaaagggaagcacgggctgcttgttggctcccat
aagtgaggatattatcctatcaggagtagaaggaggtctgagtggcagga
tgtgagacccagcttgcagattgaagatagccataaactaacaagcagtt
tcaagacacaagaaaaagaaagggtcgtggcttgttctcatggagccaca
aaaaaaaataaataattaagagtgtggccccttcatcactgtgtgcagca
tccatctccacttacaacacgtatttctttttgtaacacttttgacccac
attttctgtttagtggcaatagaaactaacaagaagcgtgactggttaca
acatgctctatcaccgtgtcaaagagacgatcgactcatgactgtcagtg
atgctgatggtagaaccttttattatacaatatctttag
gaattctatcctgctctattcagggactgagaaccacgtgaattctgtgg
gttcccctatgtagcttggagtacttgcctgagaactaggcatgaattga
tccagttagcgcaaggcacactttgtttgtttgtttctactgaagagatc
tcagtagtatttaaacataggctatacttggatttatatgataaatgtta
gctgtagtttttaagaagaaaaataataattcttttgtttgtattttaag
ttactatttataatcactttaaaaacatttaaaacacgttcttaagacaa
ttcttataaagtttagtccttatttagttcattcagttacatcttgtccc
caatgtgacagatttaatagttaggtataacaaagaggaaagaataacaa
aataaatcctctgccttcagtcttcctttgtttagtgttaggcaaacaat
gggcattgcagacagggcaacagtaacgatttttggcagttggtgtgttt
ggccaaggtggaagctgtcattgaagaactggtttcttttgagcagatgc
tctgtgctcagcattattctcaaggctgcaaagttagcaagtgattatgt
ggagcaccatgcacagaaagcctggtgttgtgagctaccagtaataaaga
acatctatgacaaagaccaagggaaaggtggagcgtgcatttaggcagtg
ctgtctgaagtgatgctgcagtgcgggaaacatctcttctcacacagata
ggagtgagtcccctagagtcccctgtcttaggtagcacagtgggcaacga
ctacctagcattgacattgttgcaactgaggatcttgagttattcaaaga
tgaaattattaccttatttgccaggggtatgggaattgatatttcattgt
gtccgagtatctgaaagtttctactataaatttgctccatatgagtcaca
aaagatcaaactcgttcttatcagagataagtcattctatgagagtctgt
gaagttcagcaatgtgcttctgtggtggacaaatgcttccaggcagaaga
gaaggaactgctcagagcagggctctcgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119782491_119783660
seq2: B6Ng01-139M15.b_49_1187 (reverse)

seq1  CTAAAGATAATTGTGTATTAATAAAAGGGGTTTCTGGCCCATCAGCATCA  50
      |||||||| |||||    ||||||||||   ||||   ||||||||||||
seq2  CTAAAGAT-ATTGT---ATAATAAAAGG---TTCT--ACCATCAGCATCA  41

seq1  CTGACAGTCATGGGGTCTGATCTGTTCCTCTTTTGCCACGGTGAT-GAGC  99
      ||||||||||| | ||| |||| ||  ||| |||| ||||||||| ||| 
seq2  CTGACAGTCAT-GAGTC-GATC-GT--CTC-TTTGACACGGTGATAGAG-  84

seq1  CATGTTGTTACCCAGTCACCGCTTCTGTGTTAGTTTCCTATTGCCACTAT  149
      ||||||| || ||||||| ||||||| ||||||||| |||||||||||| 
seq2  CATGTTG-TAACCAGTCA-CGCTTCT-TGTTAGTTT-CTATTGCCACTA-  129

seq1  AACAGAAAATGGTGGGGTCAAAAAGTGTTACCAAAAAGAAATACGTTGTT  199
      |||||||||||   ||||| |||||||||| |||||||||||||||   |
seq2  AACAGAAAATG--TGGGTC-AAAAGTGTTA-CAAAAAGAAATACGT--GT  173

seq1  TGTAAGTTGGAGATGGGATGCTGCAACCACAGTGATGAAGGGGCCACACT  249
      |||||| ||||||| ||||||||||  |||||||||||||||||||||||
seq2  TGTAAG-TGGAGAT-GGATGCTGCA--CACAGTGATGAAGGGGCCACACT  219

seq1  CTTTATTTATTTATTTTTTTTTGTGGCTCCATGAGGACAAGCCACGACCC  299
      | ||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  C-TTAATTATTTATTTTTTTTTGTGGCTCCATGAGAACAAGCCACGACCC  268

seq1  TTTCTTTTTCTTGTGTCTTGAAACTGCTTGTTAGTTTATGGCTATCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTGTGTCTTGAAACTGCTTGTTAGTTTATGGCTATCTTCA  318

seq1  ATCTGCAAGCTGGGTCTCACATCCTGCCACTCAGACCTCCTTCTACTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGCTGGGTCTCACATCCTGCCACTCAGACCTCCTTCTACTCCT  368

seq1  GATAGGATAATATCCTCACTTATGGGAGCCAACAAGCAGCCCGTGCTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATAATATCCTCACTTATGGGAGCCAACAAGCAGCCCGTGCTTCC  418

seq1  CTTTGTCATATAGTACAGCACATTGTCAGGTTCAGAGAGAGGGCATTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCATATAGTACAGCACATTGTCAGGTTCAGAGAGAGGGCATTTGT  468

seq1  GTCTTTGTGGTGATAGGGTATATTTGTCTCCCGATTACAGCCCATTAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGGTGATAGGGTATATTTGTCTCCCGATTACAGCCCATTAACT  518

seq1  TTTCATTCCAACGCCTAGCTTTAGTTTATGTTTTCACCCTCCTATTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCAACGCCTAGCTTTAGTTTATGTTTTCACCCTCCTATTTCTT  568

seq1  CCCTGCATCTTCTTAGTTACGGGATCTTTTGCTATGTATATTCTACTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCTTCTTAGTTACGGGATCTTTTGCTATGTATATTCTACTTTA  618

seq1  GGTTTTACCTGTACCTCCAGGATGTGGTATATAGGTATGTGGATGAGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACCTGTACCTCCAGGATGTGGTATATAGGTATGTGGATGAGGAG  668

seq1  GATGCCATCAAAATGATCTTTCAACATACCAATGCTCTAATTTTCAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATCAAAATGATCTTTCAACATACCAATGCTCTAATTTTCAAAAG  718

seq1  AACTGTAGAAGGCTGTCCCGAGGTAGGCTGTATTTTCATTTGGCAGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGAAGGCTGTCCCGAGGTAGGCTGTATTTTCATTTGGCAGAGAG  768

seq1  AAAATTGCAATTTGTCAAATTGATTCTTCACAATCGATACAATTCTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCAATTTGTCAAATTGATTCTTCACAATCGATACAATTCTTTCT  818

seq1  TAGTCATTAGTTTGACTTGGAATTGGAATAAACTGAAGGGAAGATATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTAGTTTGACTTGGAATTGGAATAAACTGAAGGGAAGATATGCT  868

seq1  CAGGTACTTATACTCTGGAAGGTAGGTATCCTCATCCGCAGTGATGAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTTATACTCTGGAAGGTAGGTATCCTCATCCGCAGTGATGAAAC  918

seq1  TGGATCTCAGAGTCTAAGGATTTTCCCAAGGTCAAATGGTTGGTAGCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCAGAGTCTAAGGATTTTCCCAAGGTCAAATGGTTGGTAGCTGA  968

seq1  CCCAGAGCTGGGACACCAGAGCTTATGAGTTTGTTGTTGTTTTACCTCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTGGGACACCAGAGCTTATGAGTTTGTTGTTGTTTTACCTCAC  1018

seq1  TGTCTTGCTTGATGAATATTTATAGATCCATGCCTTGCTGCTGCTTTTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTTGATGAATATTTATAGATCCATGCCTTGCTGCTGCTTTTAC  1068

seq1  CTTTGTTATTGATTGGTTACATTTTAAACATAGTGAGTGGTCCATTGCAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATTGATTGGTTACATTTTAAACATAGTGAGTGGTCCATTGCAT  1118

seq1  GTTGGTTTGTTCACTGAATTC  1170
      |||||||||||||||||||||
seq2  GTTGGTTTGTTCACTGAATTC  1139

seq1: chr14_119618849_119619961
seq2: B6Ng01-139M15.g_69_1150

seq1  GAATTCTATCCTGCTCTATTCAGGGACTGAGAACCACGTGAATTCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCTGCTCTATTCAGGGACTGAGAACCACGTGAATTCTGTGG  50

seq1  GTTCCCCTATGTAGCTTGGAGTACTTGCCTGAGAACTAGGCATGAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTATGTAGCTTGGAGTACTTGCCTGAGAACTAGGCATGAATTGA  100

seq1  TCCAGTTAGCGCAAGGCACACTTTGTTTGTTTGTTTCTACTGAAGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAGCGCAAGGCACACTTTGTTTGTTTGTTTCTACTGAAGAGATC  150

seq1  TCAGTAGTATTTAAACATAGGCTATACTTGGATTTATATGATAAATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTATTTAAACATAGGCTATACTTGGATTTATATGATAAATGTTA  200

seq1  GCTGTAGTTTTTAAGAAGAAAAATAATAATTCTTTTGTTTGTATTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGTTTTTAAGAAGAAAAATAATAATTCTTTTGTTTGTATTTTAAG  250

seq1  TTACTATTTATAATCACTTTAAAAACATTTAAAACACGTTCTTAAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTATAATCACTTTAAAAACATTTAAAACACGTTCTTAAGACAA  300

seq1  TTCTTATAAAGTTTAGTCCTTATTTAGTTCATTCAGTTACATCTTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAAGTTTAGTCCTTATTTAGTTCATTCAGTTACATCTTGTCCC  350

seq1  CAATGTGACAGATTTAATAGTTAGGTATAACAAAGAGGAAAGAATAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGACAGATTTAATAGTTAGGTATAACAAAGAGGAAAGAATAACAA  400

seq1  AATAAATCCTCTGCCTTCAGTCTTCCTTTGTTTAGTGTTAGGCAAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCTCTGCCTTCAGTCTTCCTTTGTTTAGTGTTAGGCAAACAAT  450

seq1  GGGCATTGCAGACAGGGCAACAGTAACGATTTTTGGCAGTTGGTGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGCAGACAGGGCAACAGTAACGATTTTTGGCAGTTGGTGTGTTT  500

seq1  GGCCAAGGTGGAAGCTGTCATTGAAGAACTGGTTTCTTTTGAGCAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGTGGAAGCTGTCATTGAAGAACTGGTTTCTTTTGAGCAGATGC  550

seq1  TCTGTGCTCAGCATTATTCTCAAGGCTGCAAAGTTAGCAAGTGATTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTCAGCATTATTCTCAAGGCTGCAAAGTTAGCAAGTGATTATGT  600

seq1  GGAGCACCATGCACAGAAAGCCTGGTGTTGTGAGCTACCAGTAATAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACCATGCACAGAAAGCCTGGTGTTGTGAGCTACCAGTAATAAAGA  650

seq1  ACATCTATGACAAAGACCAAGGGAAAGGTGGAGCGTGCATTTAGGCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATGACAAAGACCAAGGGAAAGGTGGAGCGTGCATTTAGGCAGTG  700

seq1  CTGTCTGAAGTGATGCTGCAGTGCGGGAAACATCTCTTCTCACACAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAAGTGATGCTGCAGTGCGGGAAACATCTCTTCTCACACAGATA  750

seq1  GGAGTGAGTCCCCTAGAGTCCCCTGTCTTAGGTAGCACAGTGGGCAACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGTCCCCTAGAGTCCCCTGTCTTAGGTAGCACAGTGGGCAACGA  800

seq1  CTACCTAGCATTGACATTGTTGCAACTGAGGATCTTGAGTTAATTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTACCTAGCATTGACATTGTTGCAACTGAGGATCTTGAGTT-ATTCAAAG  849

seq1  ATGAAATTATTACCTTATTTGCCAGGGGTATGGGAATTGATATTTCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTATTACCTTATTTGCCAGGGGTATGGGAATTGATATTTCATTG  899

seq1  TGTCCGAGTATCTGAAAGTTTCTACTATAAATTTGCTCCAATATGAGTCA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCCGAGTATCTGAAAGTTTCTACTATAAATTTGCTCC-ATATGAGTCA  948

seq1  CAAAAAGATCAAACTCGTTCTTATCAAGAAGATAAAGTCCATTCTATGAA  1000
      | ||||||||||||||||||||||||   |||| |||| ||||||||| |
seq2  C-AAAAGATCAAACTCGTTCTTATCA--GAGAT-AAGT-CATTCTATG-A  992

seq1  GAGTCTGTTGAAGTTTTCAAGCAAATGTTGCCTCCTGTGGGTGGACAAAA  1050
      ||||||| |||||||    ||| |||||   || |||| |||||||  ||
seq2  GAGTCTG-TGAAGTT---CAGC-AATGT--GCTTCTGT-GGTGGAC--AA  1032

seq1  ATGCTTCCCCAGGGCAGACAGGAAGACAGTGGACATTGCTCAAGAGGCAG  1100
      ||||||||    ||||||   |||      ||| | ||||| ||| ||||
seq2  ATGCTTCC---AGGCAGAAGAGAA------GGA-ACTGCTC-AGA-GCAG  1070

seq1  TGGCTCTCGTAAA  1113
       ||||||||||||
seq2  -GGCTCTCGTAAA  1082