BAC Information

Click to search

BAC

Clone NameB6Ng01-141B13
Chromosome14 (Build37)
Map Location 8,475,734 - 8,606,130
singlet/doubletdoublet
Overlap geneLOC100042312, LOC100041893, ENSMUSG00000058570
Upstream geneLOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881
Downstream geneEG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B13.bB6Ng01-141B13.g
ACCDH939647DH939648
length5481,120
definitionDH939647|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B13, 5' end.DH939648|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,605,577 - 8,606,130)(8,475,734 - 8,476,868)
sequence
aatgacacaaaagtcagacagttattcctgatctagaacccaaacccact
cactccatttctttctttcttcctttttttttttttttttttgttatttt
tttttttttatttttccagacaggctttgtcctggaactcactttgtaga
ccaggctggcctcgagctcagaaatttgcctgcctctgcctccccagttg
ctgggattaaaggcatgtgccaccaccgcccggcctcactccatttctac
tcaaagtatcggccacagtacctcatgagacacacagattagcctcctgc
tttatctctgacttgaactaggatttttctgtccttgtcactctatcccg
gccacactgaacactcaggcatctctctgaacttgcaaggtttctatgtc
acagttgcctgccatgttctattggcttcttagttcttgcttacaagcca
tactctccacatagccacttggtcctgcgggaccgtgctccttccacggc
atccttaacagtacataaaagtttgttttcctcctccaacatactata
gaattcctaaaagagcagaaaagctatcttccagctggtttgctaagcta
tgttcctcttcctaaccaccattgtcagacatatgccacactccctgtta
caggcccggttgccttgaaatgtataagctgcctcagacataaagatatg
gggaacattgtcaggtcatatcagatgggacgcagggaaatcctgaagtt
catagtgcttagcactatcaagcactaattaatcatgtgtcttcaaatcc
aaagtgtctgagtcctcaccacatgacatgaccaggggagcatccttctc
tgttcttttcatcagagactcaagttacctacagtaatctggaagatgaa
gtgcttcaactcccttccatgaaaggacacactgttattctcatagtgcc
cactcctgacattttttgctactcaaaatgaaattaaatagatcccagaa
aagtagctgcaggtttgtcaattcctggctctgtcaaactcatcatcaga
aattcttgactctttgtctgacattgacaaagtccaaggcttcatcttgt
aagacctactcctggaaggcccagctcaagcctacctctaccaggaagtt
ccccaactctgcccaggactcactgtgccttctccataaccatttccttc
ttcctttttcatgagaaaggattccctcttccttctctgttggtctggtc
tctccttcatcgccattctctttctgaaatagcctgagcagccaggaaaa
cattcctgctggtgaacccagagcaaacagaagggatgaaccacaggcag
ttgctgtcaccacaacacaggtgacaacacagaagattctagttctatcc
tagatacaagagattctccaaggaaagcattactgatgatgtcactagca
actgccatgacctacctgtaactagttctgcccagctgttcttttctggg
tgctctctgagcttctcatggactcgtgggatcctctttgcacttctctt
tcaagctggagaattcttactgctcatagatgtcatgtgctttgaggggg
aacggtggtaggaccctgacatgcttaaagattttgttggcatccgaact
ctaagggaccgtggatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8605577_8606130
seq2: B6Ng01-141B13.b_48_601 (reverse)

seq1  TATAGTATGTTGGAGGAGGAAAACAAACTTTTATGTACTGTTAAGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATGTTGGAGGAGGAAAACAAACTTTTATGTACTGTTAAGGATGC  50

seq1  CGTGGAAGGAGCACGGTCCCGCAGGACCAAGTGGCTATGTGGAGAGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGGAGCACGGTCCCGCAGGACCAAGTGGCTATGTGGAGAGTATG  100

seq1  GCTTGTAAGCAAGAACTAAGAAGACAATAGAACATGGCAGGCAACTGTGA  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTGTAAGCAAGAACTAAGAAGCCAATAGAACATGGCAGGCAACTGTGA  150

seq1  CATAGAAACCTTGCAAGTTCAGAGAGATGCCTGAGTGTTCAGTGTGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACCTTGCAAGTTCAGAGAGATGCCTGAGTGTTCAGTGTGGCCG  200

seq1  GGATAGAGTGACAAGGACAGAAAAATCCTAGTTCAAGTCAGAGATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGTGACAAGGACAGAAAAATCCTAGTTCAAGTCAGAGATAAAGC  250

seq1  AGGAGGCTAATCTGTGTGTCTCATGAGGTACTGTGGCCGATACTCTGAGT  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGGCTAATCTGTGTGTCTCATGAGGTACTGTGGCCGATACTTTGAGT  300

seq1  AGAAATGGAGTGAGGCCGGGCGGTGGTGGCACATGCCTTTAATCCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAGTGAGGCCGGGCGGTGGTGGCACATGCCTTTAATCCCAGCA  350

seq1  ACTGGGGAGGCAGAGGCAGGCAAATTTCTGAGCTCGAGGCCAGCCTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGCAGAGGCAGGCAAATTTCTGAGCTCGAGGCCAGCCTGGTC  400

seq1  TACAAAGTGAGTTCCAGGACAAAGCCTGTCTGGAAAAATAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACAAAGCCTGTCTGGAAAAATAAAAAAAAAAA  450

seq1  AATAACAAAAAAAAAAAAAAAAAAAGGAAGAAAGAAAGAAATGGAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAAAAAAAAAAAAAAAAGGAAGAAAGAAAGAAATGGAGTGAG  500

seq1  TGGGTTTGGGTTCTAGATCAGGAATAACTGTCTGACTTTTGTGTCATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGGTTCTAGATCAGGAATAACTGTCTGACTTTTGTGTCATTGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554

seq1: chr14_8475734_8476868
seq2: B6Ng01-141B13.g_69_1188

seq1  GAATTCCTAAAAGAGCAGAAAAGCTATCTTCCAGCTGGTTTGCTAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAAGAGCAGAAAAGCTATCTTCCAGCTGGTTTGCTAAGCTA  50

seq1  TGTTCCTCTTCCTAACCACCATTGTCAGACATATGCCACACTCCCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTTCCTAACCACCATTGTCAGACATATGCCACACTCCCTGTTA  100

seq1  CAGGCCCGGTTGCCTTGAAATGTATAAGCTGCCTCAGACATAAAGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCGGTTGCCTTGAAATGTATAAGCTGCCTCAGACATAAAGATATG  150

seq1  GGGAACATTGTCAGGTCATATCAGATGGGACGCAGGGAAATCCTGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATTGTCAGGTCATATCAGATGGGACGCAGGGAAATCCTGAAGTT  200

seq1  CATAGTGCTTAGCACTATCAAGCACTAATTAATCATGTGTCTTCAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCTTAGCACTATCAAGCACTAATTAATCATGTGTCTTCAAATCC  250

seq1  AAAGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTCTC  300

seq1  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  350

seq1  GTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTCATAGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTCATAGTGCC  400

seq1  CACTCCTGACATTTTTTGCTACTCAAAATGAAATTAAATAGATCCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGACATTTTTTGCTACTCAAAATGAAATTAAATAGATCCCAGAA  450

seq1  AAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTCATCATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTCATCATCAGA  500

seq1  AATTCTTGACTCTTTGTCTGACATTGACAAAGTCCAAGGCTTCATCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGACTCTTTGTCTGACATTGACAAAGTCCAAGGCTTCATCTTGT  550

seq1  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTT  600

seq1  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCATAACCATTTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCATAACCATTTCCTTC  650

seq1  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTC  700

seq1  TCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAA  750

seq1  CATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCTGGTGAACCCAGAGCAAACAGAAGGGATGAACCACAGGCAG  800

seq1  TTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTATCC  850

seq1  TAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTAGCA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGATACAAGAGATTCTCCAAGGAAAGCATTACTGATGATGTCACTAGCA  900

seq1  ACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTTCT  950
      |||||||||||||||||| |||||||||||||||||||  || |||||||
seq2  ACTGCCATGACCTACCTG-TAACTAGTTCTGCCCAGCT--GTTCTTTTCT  947

seq1  GGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTGGGATCCCCTTTGGCA  1000
       ||||| |||||   |||| |||||||||| |||||||||| |||||   
seq2  -GGGTG-CTCTC--TGAGCTTCTCATGGACTCGTGGGATCCTCTTTG--C  991

seq1  ACCTCTCCTTCCAAAGCTGGAGAATTC-TACTGCTTCATTAGATGTCATG  1049
      || |||| |||  |||||||||||||| |||||| ||| |||||||||||
seq2  ACTTCTCTTTC--AAGCTGGAGAATTCTTACTGC-TCA-TAGATGTCATG  1037

seq1  TGCTTTTGAGGGGGAACGTTGGTTAGGACTCTGACATGCTTAAGAGATTT  1099
      ||| |||||||||||||| ||| |||||| ||||||||||||| ||||||
seq2  TGC-TTTGAGGGGGAACGGTGG-TAGGACCCTGACATGCTTAA-AGATTT  1084

seq1  TGTTGGCACCCAAAACTCT-AGGGACTGTGGATGTAG  1135
      |||||||| ||  |||||| |||||| ||||||||||
seq2  TGTTGGCATCC-GAACTCTAAGGGACCGTGGATGTAG  1120