BAC Information

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BAC

Clone NameB6Ng01-141J23
Chromosome14 (Build37)
Map Location 96,710,553 - 96,870,583
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J23.bB6Ng01-141J23.g
ACCDH940032DH940033
length1,1441,116
definitionDH940032|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J23, 5' end.DH940033|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,869,435 - 96,870,583)(96,710,553 - 96,711,662)
sequence
gaattcaatttgaccttttacttaatgagaagaaagtcttttgaaagaaa
caaaacctaacaaggtaaatatcacagaaaaggtcacagaacacgcccag
aggtatctctggaattttatttcatcctttaaaatatgtttttagcttct
tgtgtttataatacattttctaatacattctgctttctatcaaaattcaa
tttaatgcacaattaaagcagtttttcaattaatggaacagttaagcagg
aaaccagtgagcttgcatataggcctttttttcaattttacagatcacta
atactttgcatatgtgggatgcactgattataaacaatgacaaatattac
aaaagatacatcacactaagtataggatactttcacgtcccccaaattca
gtgctctacagtatcattctttcggccaattccccatactgatttctaaa
gtacctacagttttacagttttaaagtacctatggttttatagttcatgg
caactccgtataaaagtatgaggtaatatcactatttatttaataaacat
tgttttgataggtttcacatacatatcatggattcattttgtttgtattc
taactcaaccactgcactactctctctctttttattggtccccccccctc
tctccagatgctctcctctgaatgcttctacaccgaatcacacatccaaa
cacacacacacaccccacacatacaaatatacatacacactaaattatag
ttcaacaagttattgaaacatattttgtctttctcattagattttcctgt
ttctgcttctttatatcccctattattccatctcacacttccttaatttt
acttcaatttcataactgtacacatagaattgcccatacagaaacacaca
cacttaaacatacacacttacatttacatatacaaacatagaataatatt
cgacatttgatagagatatatgatagttatattttctgattctggtatgt
gctttacatggcaacactgaagttatctaattttctccagtgacactatt
tcattccctcaaagttaaatatagaatgcatttctgtacaaactgtattt
atgttcccctgtatggacaaatattaagcctagttctattcttg
gaattcttacaagatcctgaatgttcaaagagtgtgtctctgagtcatgt
gcctactcttggggttgtttccttctcttgatttgacatgtccagcttag
ttgtcatggtttttctttcatttcattatatttttatgttgttatatttt
attattatcctttagaagctcgtgctttttaaatgagagacagaaaggaa
gtggatgtggaggggaggaaagcagaaggaactgggataaggagatggag
ggcaaaccataatcaggatttttttatgtgaagaaagacttcatatttaa
tataatggaataaaagactttgaatagtctatgaagtgcagctaaatcaa
tatagtgtctttgagagttcatggaagaactatacaaaacagtacttgga
gaaatgcatcaatactggagattctaacactatagaaacaatgtgtgtag
ctggcagaaataaggggggaaaagaaataaggagaagaggaaaaaagtga
agagtgagattgtatttcatcatgactagcagtcagtaagaaccatgctt
ttacatggattacaattttaaatgttaacataaaagtagaaaaataatga
ttggcaagtcaatgccttatgtccccaaactataattcatggataaatta
ttaaagtatctatttagttaaaaagataatgtatactaaatgtggaagtt
aacttagtttattccattgtatattaaaaataaaacctttcatgttacaa
agaaaacccaatgaatgaatgatggatgaataagcaatacattaactaaa
atataaatctagaaatacctcaaaaataaaaccttacttttttctccagt
gacatctcaattatcacttagagcactcataatcctgatatgaaataaat
aggcagttattcacattaacacattaccggttttggcaaagggcttctct
ggcatctaatgtcattggaataattgatttcacaacacaacaacaccatt
acaccaaacctctactggcactaattacctgggacagcaagaaagtaaaa
taaaagaagtcctggcattacaacagcccacttctagactgaaggaaatc
tctggatctatcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96869435_96870583
seq2: B6Ng01-141J23.b_47_1190 (reverse)

seq1  CAAGATATAGAACTAGCCTATATATTTGTCAATACATGTGTACATAAATA  50
      ||||| |||||||||| ||  ||||||||| ||||| | | |||||||||
seq2  CAAGA-ATAGAACTAGGCTTAATATTTGTCCATACAGGGGAACATAAATA  49

seq1  CAGTTTGTACAGAAATGCA-TCTATATTAAACTTTGAGGGAATGAAATAG  99
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CAGTTTGTACAGAAATGCATTCTATATTTAACTTTGAGGGAATGAAATAG  99

seq1  TGTCACTTGGAAGAAAATTAGATAACTTCAGTGTTTGCCATGTAAAGCAC  149
      |||||||  | |||||||||||||||||||||| ||||||||||||||||
seq2  TGTCACT--GGAGAAAATTAGATAACTTCAGTG-TTGCCATGTAAAGCAC  146

seq1  AATAACCAGAATCAG-AAATATAACTATCATATATCTTCTATCAAATGTC  198
      |   ||||||||||| |||||||||||||||||||| |||||||||||||
seq2  A--TACCAGAATCAGAAAATATAACTATCATATATC-TCTATCAAATGTC  193

seq1  GAATATTATTCTATGTTTGTATATGTAAATGTAAGTGTGTATGTTTAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATTCTATGTTTGTATATGTAAATGTAAGTGTGTATGTTTAAGT  243

seq1  GTGTGTGTTTCTGTATGGGCAATTCTATGTGTACAGTTATGAAATTGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTCTGTATGGGCAATTCTATGTGTACAGTTATGAAATTGAAG  293

seq1  TAAAATTAAGGAAGTGTGAGATGGAATAATAGGGGATATAAAGAAGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAGGAAGTGTGAGATGGAATAATAGGGGATATAAAGAAGCAGA  343

seq1  AACAGGAAAATCTAATGAGAAAGACAAAATATGTTTCAATAACTTGTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAATCTAATGAGAAAGACAAAATATGTTTCAATAACTTGTTGA  393

seq1  ACTATAATTTAGTGTGTATGTATATTTGTATGTGTGGGGTGTGTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTAGTGTGTATGTATATTTGTATGTGTGGGGTGTGTGTGTGT  443

seq1  GTTTGGATGTGTGATTCGGTGTAGAAGCATTCAGAGGAGAGCATCTGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATGTGTGATTCGGTGTAGAAGCATTCAGAGGAGAGCATCTGGAG  493

seq1  AGAGGGGGGGGGACCAATAAAAAGAGAGAGAGTAGTGCAGTGGTTGAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGGGGACCAATAAAAAGAGAGAGAGTAGTGCAGTGGTTGAGTT  543

seq1  AGAATACAAACAAAATGAATCCATGATATGTATGTGAAACCTATCAAAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAACAAAATGAATCCATGATATGTATGTGAAACCTATCAAAAC  593

seq1  AATGTTTATTAAATAAATAGTGATATTACCTCATACTTTTATACGGAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATTAAATAAATAGTGATATTACCTCATACTTTTATACGGAGTT  643

seq1  GCCATGAACTATAAAACCATAGGTACTTTAAAACTGTAAAACTGTAGGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAACTATAAAACCATAGGTACTTTAAAACTGTAAAACTGTAGGTA  693

seq1  CTTTAGAAATCAGTATGGGGAATTGGCCGAAAGAATGATACTGTAGAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAATCAGTATGGGGAATTGGCCGAAAGAATGATACTGTAGAGCA  743

seq1  CTGAATTTGGGGGACGTGAAAGTATCCTATACTTAGTGTGATGTATCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTGGGGGACGTGAAAGTATCCTATACTTAGTGTGATGTATCTTT  793

seq1  TGTAATATTTGTCATTGTTTATAATCAGTGCATCCCACATATGCAAAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTTGTCATTGTTTATAATCAGTGCATCCCACATATGCAAAGTA  843

seq1  TTAGTGATCTGTAAAATTGAAAAAAAGGCCTATATGCAAGCTCACTGGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATCTGTAAAATTGAAAAAAAGGCCTATATGCAAGCTCACTGGTT  893

seq1  TCCTGCTTAACTGTTCCATTAATTGAAAAACTGCTTTAATTGTGCATTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTAACTGTTCCATTAATTGAAAAACTGCTTTAATTGTGCATTAA  943

seq1  ATTGAATTTTGATAGAAAGCAGAATGTATTAGAAAATGTATTATAAACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTTGATAGAAAGCAGAATGTATTAGAAAATGTATTATAAACAC  993

seq1  AAGAAGCTAAAAACATATTTTAAAGGATGAAATAAAATTCCAGAGATACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTAAAAACATATTTTAAAGGATGAAATAAAATTCCAGAGATACC  1043

seq1  TCTGGGCGTGTTCTGTGACCTTTTCTGTGATATTTACCTTGTTAGGTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCGTGTTCTGTGACCTTTTCTGTGATATTTACCTTGTTAGGTTTT  1093

seq1  GTTTCTTTCAAAAGACTTTCTTCTCATTAAGTAAAAGGTCAAATTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTCAAAAGACTTTCTTCTCATTAAGTAAAAGGTCAAATTGAATT  1143

seq1  C  1149
      |
seq2  C  1144

seq1: chr14_96710553_96711662
seq2: B6Ng01-141J23.g_66_1181

seq1  GAATTCTTACAAGATCCTGAATGTTCAAAGAGTGTGTCTCTGAGTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAGATCCTGAATGTTCAAAGAGTGTGTCTCTGAGTCATGT  50

seq1  GCCTACTCTTGGGGTTGTTTCCTTCTCTTGATTTGACATGTCCAGCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCTTGGGGTTGTTTCCTTCTCTTGATTTGACATGTCCAGCTTAG  100

seq1  TTGTCATGGTTTTTCTTTCATTTCATTATATTTTTATGTTGTTATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGTTTTTCTTTCATTTCATTATATTTTTATGTTGTTATATTTT  150

seq1  ATTATTATCCTTTAGAAGCTCGTGCTTTTTAAATGAGAGACAGAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCCTTTAGAAGCTCGTGCTTTTTAAATGAGAGACAGAAAGGAA  200

seq1  GTGGATGTGGAGGGGAGGAAAGCAGAAGGAACTGGGATAAGGAGATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTGGAGGGGAGGAAAGCAGAAGGAACTGGGATAAGGAGATGGAG  250

seq1  GGCAAACCATAATCAGGATTTTTTTATGTGAAGAAAGACTTCATATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCATAATCAGGATTTTTTTATGTGAAGAAAGACTTCATATTTAA  300

seq1  TATAATGGAATAAAAGACTTTGAATAGTCTATGAAGTGCAGCTAAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGAATAAAAGACTTTGAATAGTCTATGAAGTGCAGCTAAATCAA  350

seq1  TATAGTGTCTTTGAGAGTTCATGGAAGAACTATACAAAACAGTACTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTCTTTGAGAGTTCATGGAAGAACTATACAAAACAGTACTTGGA  400

seq1  GAAATGCATCAATACTGGAGATTCTAACACTATAGAAACAATGTGTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATCAATACTGGAGATTCTAACACTATAGAAACAATGTGTGTAG  450

seq1  CTGGCAGAAATAAGGGGGGAAAAGAAATAAGGAGAAGAGGAAAAAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAATAAGGGGGGAAAAGAAATAAGGAGAAGAGGAAAAAAGTGA  500

seq1  AGAGTGAGATTGTATTTCATCATGACTAGCAGTCAGTAAGAACCATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATTGTATTTCATCATGACTAGCAGTCAGTAAGAACCATGCTT  550

seq1  TTACATGGATTACAATTTTAAATGTTAACATAAAAGTAGAAAAATAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGATTACAATTTTAAATGTTAACATAAAAGTAGAAAAATAATGA  600

seq1  TTGGCAAGTCAATGCCTTATGTCCCCAAACTATAATTCATGGATAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGTCAATGCCTTATGTCCCCAAACTATAATTCATGGATAAATTA  650

seq1  TTAAAGTATCTATTTAGTTAAAAAGATAATGTATACTAAATGTGGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTATCTATTTAGTTAAAAAGATAATGTATACTAAATGTGGAAGTT  700

seq1  AACTTAG-TTATTCCATTGTATATTAAAAATAAAACCTTTCATGTTACAA  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTTTATTCCATTGTATATTAAAAATAAAACCTTTCATGTTACAA  750

seq1  AGAAAA-CCAATGAATGAATGATGGATGAATAAGCAATACATTAACTAAA  798
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCAATGAATGAATGATGGATGAATAAGCAATACATTAACTAAA  800

seq1  ATATAAATCTAGAAATAC--CCAAAATAAAACCTTAC-TTTTTCTCCAGT  845
      ||||||||||||||||||  | ||||||||||||||| ||||||||||||
seq2  ATATAAATCTAGAAATACCTCAAAAATAAAACCTTACTTTTTTCTCCAGT  850

seq1  GACATCTCAA-TATCACTTAGAGCAC-CATAATCCTGATATGAAATAAAT  893
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GACATCTCAATTATCACTTAGAGCACTCATAATCCTGATATGAAATAAAT  900

seq1  AGGCAG-TATTCACATTAACACATTA-CGGTTTTGGCAAAGGGC-TCTCT  940
      |||||| ||||||||||||||||||| ||||||||||||||||| |||||
seq2  AGGCAGTTATTCACATTAACACATTACCGGTTTTGGCAAAGGGCTTCTCT  950

seq1  GGCATCTAATGTCATTGGAATAATTGATTTCACAACAACAACAACAACAT  990
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  GGCATCTAATGTCATTGGAATAATTGATTTCACAAC-ACAACAACACCAT  999

seq1  TACAACAAAACCTCTACATGGCAGCAATTAACTGTGACAAGCAAGAAGTA  1040
      ||| || |||||||||| |||||  ||||| ||| ||| ||||||||   
seq2  TAC-ACCAAACCTCTAC-TGGCACTAATTACCTGGGAC-AGCAAGAAAGT  1046

seq1  AAAATAAAAAGAAGTTCT-GCATTACAACAG-CCACTTCTTAGACTGAGG  1088
      ||||| ||||||||| || |||||||||||| ||||||| |||||||| |
seq2  AAAAT-AAAAGAAGTCCTGGCATTACAACAGCCCACTTC-TAGACTGAAG  1094

seq1  AAAATCTCTGGGATC-ATCCTGA  1110
       |||||||| ||||| |||||||
seq2  GAAATCTCT-GGATCTATCCTGA  1116