BAC Information

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BAC

Clone NameB6Ng01-142B10
Chromosome14 (Build37)
Map Location 53,393,295 - 53,533,034
singlet/doubletdoublet
Overlap geneEG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525
Upstream geneEar-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180
Downstream geneLOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B10.bB6Ng01-142B10.g
ACCDH940374DH940375
length1,0211,133
definitionDH940374|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B10, 5' end.DH940375|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,532,476 - 53,533,034)(53,393,295 - 53,394,442)
sequence
gaattcctgatagaatagcattgtggattccctgtgagatctgccaaacc
ttgcaacaaatcctttctccttcttgtggacccttctcagcacgttccca
aacctttctagtgggttttgttttctttgtgtcaactgtgaatatctaca
gacactacctgggaacccagtgtctacactggcttgggaagtaagagggt
catcctcattgtccgtcctgtcctcaacatcagtttccttagtaccatcc
ccatcccttatgtaacagaccacttactgggcctgtcctctcactcctcc
tcatttactaggaactcagccaaaccttgctgcatttcctttcatctctc
acccccattcctctatgtcaaaggccaatagagacattctacctgggaat
cttgtggtcacaaccacctgggaaaaaaagtatctcatcttcaatggcct
tcatggcctacaatgctatttctctagtttcattccccacctctgtatca
gaccacttgtaggggccagagcttgcttcctctctgctttcattatccag
ggactccagcaaaccttgcagagaactcagctcccttgtcctgtggacct
tcacagtacccgctctagtacaaacccctctccattatgtcaccctcaag
tgcataagaaaactctttccgtgagtgaccacatgagcagggacttaagg
agattattcacactatcctatctgtcccccattacaatctctccattctt
atccttaacctggtaacaatgtgcttacaggtccccttcctcaacgtcat
tcactggacaccaaaactcttgactcagacccagggtccctttcatgctc
acctctccccccccaaaaaattctttgccttactgtaacctgcttgtaag
atcctctgctcacagcatgtccccaactccctatgaatactacctttact
tatgaacacaatcccctttggttgttatggaagcctctctcagacttttc
tctgagcccacgtctattctt
gaattctggagcatggatggactccatcacagagattctaagggaacatt
ggacataggtgaggaagactcaacagccctgagatgtctggagagaatac
ataaactcatgagcagtcaaacattatctcagtaaaccaatgagctttaa
gatgagcaaagggtgaagaataaaattaagggaaatgatttaaaaatgac
ataactttatagtaactccaagtataaatggtcttacttatcaattaaaa
gactgttgttcatacgaaataaatactcagcaggatattacctgtaagat
actcacctcactagcaaaggtatgcacatactgaaagtgaaaggatggaa
aatatttttcttagaaggtgaagctcaaaagcaagcagagtcagctctat
tcatatctgacaaatcagattttaagccccaaccaatcagaaaatacaag
gcacatggacaaagggaacagtccagcaagaacatagagcaattgtaaaa
atatatgtgccaattatcagtgcattcagttctgtaaagccaagtgtatt
agacataaagaatcagactggcccaggtgtaacaatgtgtataatagtgg
gtgacttcgctcttattatgattaatgggtaaatcatccacacaaaaaga
tagtcatggaatcttaaagataaacttcacatagaataaatagcctaagg
atatctgtagaatattttactggatggccacaaagtacataatatctttg
gcatcccatataactttctccaaatgagactacatttaggtcaaaaaaat
ttttaacaaaaaatttaaaataatttcttatgtattatcacacttgaact
atttggaacacattatgcaagttagtagcataagagacccagcacaacaa
ttcaagtatcaaatattccactcattttcatagggttttcccaagttgag
tattctgtttactctgagacatttacatcaacacatttcatagatttata
cacatatgtaactaatgtatatttacactatatagattatgaaataccag
acaatataagtatgactcaaatttttttgaagacacgaaatccagtattt
atttaaaactgccttagtttccatcttgaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53532476_53533034
seq2: B6Ng01-142B10.b_47_605 (reverse)

seq1  CTGGAGTCCCTGGATAATGAAAGCAGAGAGGAAGCAAGCTCTGGCCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCCCTGGATAATGAAAGCAGAGAGGAAGCAAGCTCTGGCCCCTA  50

seq1  CAAGTGGTCTGATACAGAGGTGGGGAATGAAACTAGAGAAATAGCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTCTGATACAGAGGTGGGGAATGAAACTAGAGAAATAGCATTGT  100

seq1  AGGCCATGAAGGCCATTGAAGATGAGATACTTTTTTTCCCAGGTGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGAAGGCCATTGAAGATGAGATACTTTTTTTCCCAGGTGGTTGT  150

seq1  GACCACAAGATTCCCAGGTAGAATGTCTCTATTGGCCTTTGACATAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAAGATTCCCAGGTAGAATGTCTCTATTGGCCTTTGACATAGAGG  200

seq1  AATGGGGGTGAGAGATGAAAGGAAATGCAGCAAGGTTTGGCTGAGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGTGAGAGATGAAAGGAAATGCAGCAAGGTTTGGCTGAGTTCCT  250

seq1  AGTAAATGAGGAGGAGTGAGAGGACAGGCCCAGTAAGTGGTCTGTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGAGGAGGAGTGAGAGGACAGGCCCAGTAAGTGGTCTGTTACAT  300

seq1  AAGGGATGGGGATGGTACTAAGGAAACTGATGTTGAGGACAGGACGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGGGATGGTACTAAGGAAACTGATGTTGAGGACAGGACGGACA  350

seq1  ATGAGGATGACCCTCTTACTTCCCAAGCCAGTGTAGACACTGGGTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATGACCCTCTTACTTCCCAAGCCAGTGTAGACACTGGGTTCCCA  400

seq1  GGTAGTGTCTGTAGATATTCACAGTTGACACAAAGAAAACAAAACCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTCTGTAGATATTCACAGTTGACACAAAGAAAACAAAACCCACT  450

seq1  AGAAAGGTTTGGGAACGTGCTGAGAAGGGTCCACAAGAAGGAGAAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTTGGGAACGTGCTGAGAAGGGTCCACAAGAAGGAGAAAGGAT  500

seq1  TTGTTGCAAGGTTTGGCAGATCTCACAGGGAATCCACAATGCTATTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAAGGTTTGGCAGATCTCACAGGGAATCCACAATGCTATTCTAT  550

seq1  CAGGAATTC  559
      |||||||||
seq2  CAGGAATTC  559

seq1: chr14_53393295_53394442
seq2: B6Ng01-142B10.g_66_1198

seq1  GAATTCTGGAGCATGGATGGACTCCATCACAGAGATTCTAAGGGAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGCATGGATGGACTCCATCACAGAGATTCTAAGGGAACATT  50

seq1  GGACATAGGTGAGGAAGACTCAACAGCCCTGAGATGTCTGGAGAGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGGTGAGGAAGACTCAACAGCCCTGAGATGTCTGGAGAGAATAC  100

seq1  ATAAACTCATGAGCAGTCAAACATTATCTCAGTAAACCAATGAGCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCATGAGCAGTCAAACATTATCTCAGTAAACCAATGAGCTTTAA  150

seq1  GATGAGCAAAGGGTGAAGAATAAAATTAAGGGAAATGATTTAAAAATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCAAAGGGTGAAGAATAAAATTAAGGGAAATGATTTAAAAATGAC  200

seq1  ATAACTTTATAGTAACTCCAAGTATAAATGGTCTTACTTATCAATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTATAGTAACTCCAAGTATAAATGGTCTTACTTATCAATTAAAA  250

seq1  GACTGTTGTTCATACGAAATAAATACTCAGCAGGATATTACCTGTAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGTTCATACGAAATAAATACTCAGCAGGATATTACCTGTAAGAT  300

seq1  ACTCACCTCACTAGCAAAGGTATGCACATACTGAAAGTGAAAGGATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTCACTAGCAAAGGTATGCACATACTGAAAGTGAAAGGATGGAA  350

seq1  AATATTTTTCTTAGAAGGTGAAGCTCAAAAGCAAGCAGAGTCAGCTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCTTAGAAGGTGAAGCTCAAAAGCAAGCAGAGTCAGCTCTAT  400

seq1  TCATATCTGACAAATCAGATTTTAAGCCCCAACCAATCAGAAAATACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGACAAATCAGATTTTAAGCCCCAACCAATCAGAAAATACAAG  450

seq1  GCACATGGACAAAGGGAACAGTCCAGCAAGAACATAGAGCAATTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGACAAAGGGAACAGTCCAGCAAGAACATAGAGCAATTGTAAAA  500

seq1  ATATATGTGCCAATTATCAGTGCATTCAGTTCTGTAAAGCCAAGTGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGCCAATTATCAGTGCATTCAGTTCTGTAAAGCCAAGTGTATT  550

seq1  AGACATAAAGAATCAGACTGGCCCAGGTGTAACAATGTGTATAATAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAGAATCAGACTGGCCCAGGTGTAACAATGTGTATAATAGTGG  600

seq1  GTGACTTCGCTCTTATTATGATTAATGGGTAAATCATCCACACAAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCGCTCTTATTATGATTAATGGGTAAATCATCCACACAAAAAGA  650

seq1  TAGTCATGGAATCTTAAAGATAAACTTCACATAGAATAAATAGCCTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGGAATCTTAAAGATAAACTTCACATAGAATAAATAGCCTAAGG  700

seq1  ATATCTGTAGAATATTTTACTGGATGGCCACAAAGTACATAATATCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTAGAATATTTTACTGGATGGCCACAAAGTACATAATATCTTTG  750

seq1  GCATCCCATATAACTTTCTCCAAATGAGACTACATTTAGGTCAAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCATATAACTTTCTCCAAATGAGACTACATTTAGGTCAAAAAAAT  800

seq1  TTTTAACAAAAAATTTAAAATAATTTCTTATGTATTATCACACTTGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAAAAATTTAAAATAATTTCTTATGTATTATCACACTTGAACT  850

seq1  ATTTGGAACACATTATGCAAGTTAGTAGCATAAGAGACCCAGCACAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACACATTATGCAAGTTAGTAGCATAAGAGACCCAGCACAACAA  900

seq1  TTCAAGTATCAAATATTCCACTCATTTTCATAGGGTTTTCCCAAGTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTATCAAATATTCCACTCATTTTCATAGGGTTTTCCCAAGTTGAG  950

seq1  TATTTCTGTTTACTCTGAGACATTTAACATCAACAACATTTCATAGATTT  1000
      || |||||||||||||||||||||| |||||||| |||||||||||| ||
seq2  TA-TTCTGTTTACTCTGAGACATTT-ACATCAAC-ACATTTCATAGA-TT  996

seq1  TATACACATATGTAACTTAATGTATATTATACACTAATATAGATTTATGA  1050
      |||||||||||||||| ||||||||||| |||||| ||||||| ||||||
seq2  TATACACATATGTAAC-TAATGTATATT-TACACT-ATATAGA-TTATGA  1042

seq1  AAATACAGACAATTATAAAGTTATGACTCAAAATTTTTTTGAAGACACAG  1100
      ||   ||||||| |||||   |||||||| |||||||||||||||||| |
seq2  AATACCAGACAA-TATAA--GTATGACTC-AAATTTTTTTGAAGACAC-G  1087

seq1  AAAATTCAAGTAATTTATTTAAAAACTG-CTTAGTTT-CATCTTGAAATA  1148
      |||  || ||| |||||||| ||||||| |||||||| ||||||||||||
seq2  AAA--TCCAGT-ATTTATTT-AAAACTGCCTTAGTTTCCATCTTGAAATA  1133