BAC Information

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BAC

Clone NameB6Ng01-142C24
Chromosome14 (Build37)
Map Location 30,482,441 - 30,618,057
singlet/doubletdoublet
Overlap geneCacna2d3, EG665431
Upstream geneLrtm1, Ppia-ps15
Downstream geneSelk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C24.bB6Ng01-142C24.g
ACCDH940448DH940449
length1,1081,114
definitionDH940448|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C24, 5' end.DH940449|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,482,441 - 30,483,570)(30,616,935 - 30,618,057)
sequence
gaattcagctaccctatacccatatccagtgcctcacaagcatgtataaa
ttcagagctgggaaatctaatgttctgttctggttcccacaggtatccac
aagcatgtgtacacacacacacacacacacacacacacacacacacacac
acagaaagagagagtgagagcaaaagaggagagaagaggaagagagagag
aaattacaaaataaaataaatatttaaaaaataagaagcaagctcttttt
aacaaaaatcagaaaatgatatgtgagaaacaaaacacacatgctcatat
ttagaaaacatagaaaatctgggttgttttaaaaaataaagagcctttcg
caaggggaagccttaagtcgcactgtaatggagagaagtgcaaagaagtt
gggaagtaaatacaatcatgtggaaaggaaatgtcttcatgtttggtaac
agtgagatgacagcgacttcgcaaaccacataagacagtagccacaactg
acaggtccagcccactggggaggcagattgttaaggctgacccacggaaa
acaagccggagcatattgtgcttccagtacacgctgcagcaggaacatgg
gcgaattaaaacattatgaaatgcacaaattggccaccaccattatccct
acaaaagaaatcagaaaataagataatagcaaggaattgctgtgacacag
agagaaaagcttcaaagatatgagcagaattgtgggctgaaaggcagcct
taggcaggcgggcatggctgtgggccaggagaactgtctcccctaaacac
atgaaaagaaactgagaaactaagcaaaccaaccgtgcagaacaagagaa
gcagaaaagtccacatgggcaggatgcataaagtcaggacaaatgaacca
cagttggtgttgtgtgacatcagatacataaaggcctatttctctgacac
tcatcaggagcttcttcacgatgagcccttcatagccaagcatctcaagc
atgaaggatagctatgagaatatagtctgtgctcttgcggcagctagagg
caaggaacaatgtgctgactacttgtatctagacggtttggttctgtgat
gtgttagc
gaattcaaaggttagtcttgatccaaactgtgaaccccataaaacagaag
tgagggaatggatgtgaaagagcccgtggatttccagaactaaatcaaga
cagctggctggcctcctcagctctctgtgagctccttaggcacacaaaca
tgcagtgtgtgctttggttcatcttggttctttactaagtggcctttgac
aaagccatgtcgattgctgctcacatcgctgtgagcccgagtgtgaactt
gggcttggcactgtcttatctaagttgccttatttgttaatctacacgag
gactgctctcattacagcgctttccttatggcccacaggcactcccgtat
tcatctaagcatcgcagcaagtgtggatttagaattcaagggttgactgt
gagccttcagtgggtttttttccactgtagcacagtgacctttgtatatt
tttggatgagttttaatccaaactgttcactgaacttttagttaaccaaa
tggaaaaagaggagatgaacatcacttgaaggaatccgggttcttccttc
agtttccttctgtccaatagtagaggcaatgtctttgcctaaaaaggggc
attttccccccaggagtggatggaaggacttctgcgtttattatgctcac
attaggcttctgagggctcaggctgatggcgacctggccttgataagtgc
ttctagcatctctctcccagttagagaaaggtgtaaggggttctaaactt
tacgacaaatgccagtcacagagagttatctgggaggagtggctcagctg
gtgaagcttagcctcaccactagaaatacagagcgtcacatgccaactta
gcttgaaaggagactgagaaggctagccctgccctggtgcctcacttagg
gcacgatccagatgttttatgaccagccccaatgtcctgcttcccttctc
ttcactgctcactcgatgtgagacaggactgactgagaagtaccacctct
cctgtcctctttaaggatgttgctgtggtggtatctcttaaaatttataa
atctagcagaaataattatgaaaataaactatatcttttcaagggcgaaa
gctgtgtcctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30482441_30483570
seq2: B6Ng01-142C24.b_46_1153

seq1  GAATTCAGCTACCCTATACCCATATCCAGTGCCTCACAAGCATGTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTACCCTATACCCATATCCAGTGCCTCACAAGCATGTATAAA  50

seq1  TTCAGAGCTGGGAAATCTAATGTTCTGTTCTGGTTCCCACAGGTATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCTGGGAAATCTAATGTTCTGTTCTGGTTCCCACAGGTATCCAC  100

seq1  AAGCATGTGTACACACACACACACACACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGTACACACACACACACACACACACACACACACACACACACAC  150

seq1  ACAGAAAGAGAGAGTGAGAGCAAAAGAGGAGAGAAGAGGAAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGAGAGAGTGAGAGCAAAAGAGGAGAGAAGAGGAAGAGAGAGAG  200

seq1  AAATTACAAAATAAAATAAATATTTAAAAAATAAGAAGCAAGCTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAAATAAAATAAATATTTAAAAAATAAGAAGCAAGCTCTTTTT  250

seq1  AACAAAAATCAGAAAATGATATGTGAGAAACAAAACACACATGCTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCAGAAAATGATATGTGAGAAACAAAACACACATGCTCATAT  300

seq1  TTAGAAAACATAGAAAATCTGGGTTGTTTTAAAAAATAAAGAGCCTTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACATAGAAAATCTGGGTTGTTTTAAAAAATAAAGAGCCTTTCG  350

seq1  CAAGGGGAAGCCTTAAGTCGCACTGTAATGGAGAGAAGTGCAAAGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAAGCCTTAAGTCGCACTGTAATGGAGAGAAGTGCAAAGAAGTT  400

seq1  GGGAAGTAAATACAATCATGTGGAAAGGAAATGTCTTCATGTTTGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAATACAATCATGTGGAAAGGAAATGTCTTCATGTTTGGTAAC  450

seq1  AGTGAGATGACAGCGACTTCGCAAACCACATAAGACAGTAGCCACAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGACAGCGACTTCGCAAACCACATAAGACAGTAGCCACAACTG  500

seq1  ACAGGTCCAGCCCACTGGGGAGGCAGATTGTTAAGGCTGACCCACGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCAGCCCACTGGGGAGGCAGATTGTTAAGGCTGACCCACGGAAA  550

seq1  ACAAGCCGGAGCATATTGTGCTTCCAGTACACGCTGCAGCAGGAACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCGGAGCATATTGTGCTTCCAGTACACGCTGCAGCAGGAACATGG  600

seq1  GCGAATTAAAACATTATGAAATGCACAAATTGGCCACCACCATTATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTAAAACATTATGAAATGCACAAATTGGCCACCACCATTATCCCT  650

seq1  ACAAAAGAAATCAGAAAATAAGATAATAGCAAGGAATTGCTGTGACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAATCAGAAAATAAGATAATAGCAAGGAATTGCTGTGACACAG  700

seq1  AGAGAAAAGCTTCAAAGATATGAGCAGAATTGTGGGCTG-AAGGCAGCCT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGAAAAGCTTCAAAGATATGAGCAGAATTGTGGGCTGAAAGGCAGCCT  750

seq1  TAGGCAGGCGGGCATGGCTGTGGGCCAGGAGAACTGTCTCCCCTAAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGCGGGCATGGCTGTGGGCCAGGAGAACTGTCTCCCCTAAACAC  800

seq1  ATGAAAAGAAACTGAGAAACTAAGCAAACCAACCGTGCAGAACAAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGAAACTGAGAAACTAAGCAAACCAACCGTGCAGAACAAGAGAA  850

seq1  GCAGAAAAGTTCACAATGGGCAGGATGCATAAAGTCAGGACAAATGAACC  899
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGTCCAC-ATGGGCAGGATGCATAAAGTCAGGACAAATGAACC  899

seq1  ACAGTTGGTG-TGTGTGACATCAGATACATAAAGGCCTA-TTCTCTGACA  947
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ACAGTTGGTGTTGTGTGACATCAGATACATAAAGGCCTATTTCTCTGACA  949

seq1  CTCACCAGGAGCTCTTCCACGATGAGGCCCTTCCATAGCCAAAGCATCTT  997
      |||| ||||||||  | |||||||| |||||| ||||||| |||||||| 
seq2  CTCATCAGGAGCTTCTTCACGATGA-GCCCTT-CATAGCC-AAGCATCT-  995

seq1  CAAAGCAATGAAAGATTAGCTATGAGAAATTAATAGTCTGTGCTCTGCGG  1047
        |||| ||||| || ||||||||||||    ||||||||||||||   |
seq2  -CAAGC-ATGAAGGA-TAGCTATGAGAA---TATAGTCTGTGCTCTTGCG  1039

seq1  GCAGCTAAGGAAGGCAAGGGAAACCATGTTGCTGACCTTACTTGTATCCT  1097
      |||||||    ||||||||  ||| ||| |||||||  ||||||||| ||
seq2  GCAGCTA---GAGGCAAGG--AACAATG-TGCTGAC--TACTTGTAT-CT  1080

seq1  AGAAGGGTTTTGGTGTCTGTGATGTTGGTTAGC  1130
      ||| ||  |||||| ||||||||||  ||||||
seq2  AGACGG--TTTGGT-TCTGTGATGT--GTTAGC  1108

seq1: chr14_30616935_30618057
seq2: B6Ng01-142C24.g_67_1180 (reverse)

seq1  AGTCAGG-CACTGCTTTTCGCCCTTGAAAAGTAATAGTTTTATTTTTCAT  49
      ||||||| ||| || ||||||||||||||||  |||||||   |||||| 
seq2  AGTCAGGACACAGC-TTTCGCCCTTGAAAAGATATAGTTT--ATTTTCA-  46

seq1  TATTTATTTTCTTGCTAAGATTTATAAATTTATAAAAAAAAATAACAACA  99
      || ||||||   |||| ||||||||||||||     || | ||| || ||
seq2  TAATTATTT--CTGCT-AGATTTATAAATTT----TAAGAGATACCACCA  89

seq1  CAAGCAAACATCCTAAAAGA-GACAGGAGAGGTGGTACCTTCTCAGTCAG  148
      | ||| |||||||| ||||| |||||||||||||||| ||||||||||||
seq2  C-AGC-AACATCCTTAAAGAGGACAGGAGAGGTGGTA-CTTCTCAGTCAG  136

seq1  TCCTGTCTTCACATCGAGTGAGCAGTGAAGGAGAAGGGAAGCAGGACATT  198
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTGTC-TCACATCGAGTGAGCAGTGAA-GAGAAGGGAAGCAGGACATT  184

seq1  GGGGCTGGTCAT-AAACATCTGGATCGTGCCCTAAGTGA-GCA-CAGGGC  245
      |||||||||||| |||||||||||||||||||||||||| ||| ||||||
seq2  GGGGCTGGTCATAAAACATCTGGATCGTGCCCTAAGTGAGGCACCAGGGC  234

seq1  AGGGCTAGCCTTCTCAGTCTCCTTTCAAGCTAAGTTGGCATGTGACGCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGCCTTCTCAGTCTCCTTTCAAGCTAAGTTGGCATGTGACGCTC  284

seq1  TTGTATTTCTAGTGGTGAGGCTAAGCTTCACCAGCTGAGCCACTCCT-CC  344
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -TGTATTTCTAGTGGTGAGGCTAAGCTTCACCAGCTGAGCCACTCCTCCC  333

seq1  AGATAACTCTCTGTGACTGGCATTTGTCGTAAAGTTTAGAA-CCCTTACA  393
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATAACTCTCTGTGACTGGCATTTGTCGTAAAGTTTAGAACCCCTTACA  383

seq1  CC-TTCTCTAACTGGGAGAGAGATGCTAGAAGCACTTATCAAGGCCAGGT  442
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTAACTGGGAGAGAGATGCTAGAAGCACTTATCAAGGCCAGGT  433

seq1  CGCCATCAGCCTGAGCCCTCAGAAGCCTAATGTGAGCATAATAAACGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCAGCCTGAGCCCTCAGAAGCCTAATGTGAGCATAATAAACGCAG  483

seq1  AAGTCCTTCCATCCACTCCTGGGGGGAAAATGCCCCTTTTTAGGCAAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTCCATCCACTCCTGGGGGGAAAATGCCCCTTTTTAGGCAAAGA  533

seq1  CATTGCCTCTACTATTGGACAGAAGGAAACTGAAGGAAGAACCCGGATTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTCTACTATTGGACAGAAGGAAACTGAAGGAAGAACCCGGATTC  583

seq1  CTTCAAGTGATGTTCATCTCCTCTTTTTCCATTTGGTTAACTAAAAGTTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGATGTTCATCTCCTCTTTTTCCATTTGGTTAACTAAAAGTTC  633

seq1  AGTGAACAGTTTGGATTAAAACTCATCCAAAAATATACAAAGGTCACTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAGTTTGGATTAAAACTCATCCAAAAATATACAAAGGTCACTGT  683

seq1  GCTACAGTGGAAAAAAACCCACTGAAGGCTCACAGTCAACCCTTGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGGAAAAAAACCCACTGAAGGCTCACAGTCAACCCTTGAATTC  733

seq1  TAAATCCACACTTGCTGCGATGCTTAGATGAATACGGGAGTGCCTGTGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCACACTTGCTGCGATGCTTAGATGAATACGGGAGTGCCTGTGGG  783

seq1  CCATAAGGAAAGCGCTGTAATGAGAGCAGTCCTCGTGTAGATTAACAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGAAAGCGCTGTAATGAGAGCAGTCCTCGTGTAGATTAACAAAT  833

seq1  AAGGCAACTTAGATAAGACAGTGCCAAGCCCAAGTTCACACTCGGGCTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTTAGATAAGACAGTGCCAAGCCCAAGTTCACACTCGGGCTCA  883

seq1  CAGCGATGTGAGCAGCAATCGACATGGCTTTGTCAAAGGCCACTTAGTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATGTGAGCAGCAATCGACATGGCTTTGTCAAAGGCCACTTAGTAA  933

seq1  AGAACCAAGATGAACCAAAGCACACACTGCATGTTTGTGTGCCTAAGGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGATGAACCAAAGCACACACTGCATGTTTGTGTGCCTAAGGAG  983

seq1  CTCACAGAGAGCTGAGGAGGCCAGCCAGCTGTCTTGATTTAGTTCTGGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGAGCTGAGGAGGCCAGCCAGCTGTCTTGATTTAGTTCTGGAA  1033

seq1  ATCCACGGGCTCTTTCACATCCATTCCCTCACTTCTGTTTTATGGGGTTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGGGCTCTTTCACATCCATTCCCTCACTTCTGTTTTATGGGGTTC  1083

seq1  ACAGTTTGGATCAAGACTAACCTTTGAATTC  1123
      |||||||||||||||||||||||||||||||
seq2  ACAGTTTGGATCAAGACTAACCTTTGAATTC  1114