BAC Information

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BAC

Clone NameB6Ng01-142D22
Chromosome14 (Build37)
Map Location 33,101,985 - 33,231,747
singlet/doubletdoublet
Overlap geneParg, Ogdhl, 1700024G13Rik, Chat
Upstream geneDnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, LOC665601
Downstream geneSlc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142D22.bB6Ng01-142D22.g
ACCDH940490DH940491
length1,149954
definitionDH940490|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D22, 5' end.DH940491|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,101,985 - 33,103,159)(33,230,626 - 33,231,747)
sequence
gaattctttttgctttttctggggtgtggtttttgttgttgctgtttttt
taacatcccactagaatggactatgaggttggcttctgacaactactcca
gacatcttaaacatacatagtcatttaaaattttatctaagcatgagggc
cacaaaaaggccattgcaagaatgtagagtatttttactcaaggaagact
gggagagaaatggagtgtgcggtgcaccagtcctgagctccatgagatgt
ttctaagtaaagagaagttcctttctttctaggcttactgcattacaatc
agaataaagatgttatttctgctttaagagttgattttagcttctctgtg
tgagttaattattgcagatacatcggcacttgaaaaggtgtccctgaaga
gtaaggaacttgcttcctgcccagcggattctttcaatgaaactctcatc
cttcatatttttttctgctccgtttatgaaaatcctgtgtaaggttttct
tgtcagtatctacttacgcttccttccttgtttatcttttactatctcca
taaggtatttccttggcttataagagattatgccactgctagcttagcat
actaaaatgtatcttggcatcatggtctactcagtttcttttctctccct
gagccttgcctagtaagggagccatagagaagatgtgtgtcagcattacc
acgcagctactgattaccctgagacactgcacacccttttctaactgcat
ctgcctggctagctccccccgcacctctcagtccccatgtcctgcacata
gtgtacgtgaggttctctgcggacatggatatgcagacaagtggcaggct
gaagaggaaagtctaatgagagctatcctttcctccagaagggaaggcgg
atcttcccatttgagtgtgagccttccttttcacctagaaggggttatta
tgtgtctgagaaagcctcgtggaatgacctgatcctgagatcagctcctc
atctctgcacatatgtatgattccctcctgtggcgactctgtgtagcaca
tatgcctgttttcatcagtgtactgtatgcagaccaaactacgtagttac
agctacagcattgcatggggtggctgagaataagactcggggatttttt
gaattcactatgtggccctgctctttaatatgtgattctcttacctcggt
ctctcaagtggctgggattgatgaaaggcaggttccactgggcagggtct
tttcatcataggtaacacaccctccctgccttccccaggttccactacag
gacagtaagtggtacttgaaacctgttgacataccataacgatagtaata
gctcacaatgtatatggtactttacaatatttatagggaccatcaggttg
ggggtggggcagcctgatgaatattggtggcttgttccctggcacactgg
aagggactcagaatttattatcacctggggctgattttccctcctgtttt
ctatatgttcatttatgctgcctgtagactgaaggtctttgctgaaaatt
aatagtgaaatcaaaattgtatgaggactatttctctagtttgagggaat
aatttattttttaattttgcaaagctattatttgcatgcaaacaagaggg
agcttgaggtagtgatcaatgtgttaattacagatcactcaaaaacaagc
agaaggatgacaaaaatcgatgagaaggattgagcagattattttgtata
tacttgagagcaattccaacatatttctgggctttagaattcgtcagtgt
agactttcctctaactcagtccctgattcatctcaatagctatgtttgct
ctgtttaaacactgtattaaccaggcatgatagctcaggcccgtactcca
agtactcggagcacatggcaggaggatcacaagttcaagtgagtgtggga
tctgagtgagacttcatctcaaaaagctcttagtcagctttgctaccacc
gctagcaaacagggaagatgaatcagcgatcagcacagggagtgataaca
gagacattaccatcagcacagagagaatatggagacacagcatcagcaca
gaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33101985_33103159
seq2: B6Ng01-142D22.b_49_1197

seq1  GAATTCTTTTTGCTTTTTCTGGGGTGTGGTTTTTGTTGTTGCTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCTTTTTCTGGGGTGTGGTTTTTGTTGTTGCTGTTTTTT  50

seq1  TAACATCCCACTAGAATGGACTATGAGGTTGGCTTCTGACAACTACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCCACTAGAATGGACTATGAGGTTGGCTTCTGACAACTACTCCA  100

seq1  GACATCTTAAACATACATAGTCATTTAAAATTTTATCTAAGCATGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTAAACATACATAGTCATTTAAAATTTTATCTAAGCATGAGGGC  150

seq1  CACAAAAAGGCCATTGCAAGAATGTAGAGTATTTTTACTCAAGGAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGGCCATTGCAAGAATGTAGAGTATTTTTACTCAAGGAAGACT  200

seq1  GGGAGAGAAATGGAGTGTGCGGTGCACCAGTCCTGAGCTCCATGAGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAAATGGAGTGTGCGGTGCACCAGTCCTGAGCTCCATGAGATGT  250

seq1  TTCTAAGTAAAGAGAAGTTCCTTTCTTTCTAGGCTTACTGCATTACAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTAAAGAGAAGTTCCTTTCTTTCTAGGCTTACTGCATTACAATC  300

seq1  AGAATAAAGATGTTATTTCTGCTTTAAGAGTTGATTTTAGCTTCTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGATGTTATTTCTGCTTTAAGAGTTGATTTTAGCTTCTCTGTG  350

seq1  TGAGTTAATTATTGCAGATACATCGGCACTTGAAAAGGTGTCCCTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATTATTGCAGATACATCGGCACTTGAAAAGGTGTCCCTGAAGA  400

seq1  GTAAGGAACTTGCTTCCTGCCCAGCGGATTCTTTCAATGAAACTCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAACTTGCTTCCTGCCCAGCGGATTCTTTCAATGAAACTCTCATC  450

seq1  CTTCATATTTTTTTCTGCTCCGTTTATGAAAATCCTGTGTAAGGTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTTTTTTCTGCTCCGTTTATGAAAATCCTGTGTAAGGTTTTCT  500

seq1  TGTCAGTATCTACTTACGCTTCCTTCCTTGTTTATCTTTTACTATCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTATCTACTTACGCTTCCTTCCTTGTTTATCTTTTACTATCTCCA  550

seq1  TAAGGTATTTCCTTGGCTTATAAGAGATTATGCCACTGCTAGCTTAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATTTCCTTGGCTTATAAGAGATTATGCCACTGCTAGCTTAGCAT  600

seq1  ACTAAAATGTATCTTGGCATCATGGTCTACTCAGTTTCTTTTCTCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGTATCTTGGCATCATGGTCTACTCAGTTTCTTTTCTCTCCCT  650

seq1  GAGCCTTGCCTAGTAAGGGAGCCATAGAGAAGATGTGTGTCAGCATTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGCCTAGTAAGGGAGCCATAGAGAAGATGTGTGTCAGCATTACC  700

seq1  ACGCAGCTACTGATTACCCTGAGACACTGCACACCCTTTTCTAACTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGCTACTGATTACCCTGAGACACTGCACACCCTTTTCTAACTGCAT  750

seq1  CTGCCTGGCTAGCTCCCCCCGCACCTCTCAGTCCCCATGTCCTGCACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCTAGCTCCCCCCGCACCTCTCAGTCCCCATGTCCTGCACATA  800

seq1  GTGTACGTGAGGTTCTCTGCGGACATGGATATGCAGACAAGTGGCAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGTGAGGTTCTCTGCGGACATGGATATGCAGACAAGTGGCAGGCT  850

seq1  GAAGAGGAAAGTCTAATGAGAGCTATCCTTTCCTCCAGAAGGGAAGGCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAAGTCTAATGAGAGCTATCCTTTCCTCCAGAAGGGAAGGCGG  900

seq1  ATCTTCCCATTTGAGTGTGAGCCTTCCTTTTCACCTAGAAGGGGTTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTTCCCATTTGAGTGTGAGCCTTCCTTTTCACCTAGAAGGGGTTATT-  949

seq1  ATGTGTCTGAGGAAAGGCCTCGTGGAATTGACCTGATCCTGAGATCAGCT  1000
      |||||||||||  || ||||||||||| ||||||||||||||||||||||
seq2  ATGTGTCTGAG--AAAGCCTCGTGGAA-TGACCTGATCCTGAGATCAGCT  996

seq1  CCTCCATCTCTGCAACATATGTATTGATTCCCTCCTGTGGGCGACTCTGT  1050
      ||| ||||||||| ||||||||| |||||||||||||| |||||||||||
seq2  CCT-CATCTCTGC-ACATATGTA-TGATTCCCTCCTGT-GGCGACTCTGT  1042

seq1  GGTAGCCACATATGCCTGTTTTCATCAGTGTACCTGTATGGCAGGAACCA  1100
       |||| |||||||||||||||||||||||||| |||||| ||||  ||||
seq2  -GTAG-CACATATGCCTGTTTTCATCAGTGTA-CTGTAT-GCAG--ACCA  1086

seq1  GAACTACGTAGTTACAGGCTTAACAAGCATTGCAGTGGGGTGGCCTGAGA  1150
       ||||||||||||||| |||  || ||||||||| |||||||| ||||||
seq2  -AACTACGTAGTTACA-GCT--AC-AGCATTGCA-TGGGGTGG-CTGAGA  1129

seq1  TTAAAAGGACTCCGTGGGATTTTTT  1175
       |||   |||||   ||||||||||
seq2  ATAA---GACTC--GGGGATTTTTT  1149

seq1: chr14_33230626_33231747
seq2: B6Ng01-142D22.g_68_1021 (reverse)

seq1  TCTCTGTGCTGATTGGCTGATTGTACCTATTATTCCCTTCTCTGTGCTGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGCTGATTGTCTCCATTATTTCCTACTCTGTGCTGATTGGCTGATTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTATTATTCCCTTCTCTGTGCTGATTGGCTGATTGTCTCCATTATTTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTCTGTGCTGATTGGCTGGTTGTCTCCATTATTTCCTTCTCTGTGCT  200
        |||||||||||||  ||||  |||||||| ||||    ||||||||||
seq2  --TCTCTGTGCTGAT--GCTG--TGTCTCCA-TATT---CTCTCTGTGCT  40

seq1  GATTGGTTAATTGTCTCTGTTATTCACTTCCCTGTGCTGATCGCTTGATT  250
      || ||||  | ||||||||||| |||| |||||||||||||||| |||||
seq2  GA-TGGT--AATGTCTCTGTTA-TCAC-TCCCTGTGCTGATCGC-TGATT  84

seq1  CATCTTCCCTTGTTTGCTAGC-GTGGTAGCAAAGCTGACTAAGAGCTTTT  299
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CATCTTCCC-TGTTTGCTAGCGGTGGTAGCAAAGCTGACTAAGAGCTTTT  133

seq1  TGAGATGAAGTCTCACTCAGATCCCACACTCACCTTGAACTTGTGATCCT  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAGATGAAGTCTCACTCAGATCCCACACTCA-CTTGAACTTGTGATCCT  182

seq1  CCTGCCATGTGCTCCTGAGTACTTGGAGTACGGGCCTGAGCTATCATGCC  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGTGCTCC-GAGTACTTGGAGTACGGGCCTGAGCTATCATGCC  231

seq1  TGGTTAATACAGTGTTTAAACAGAGCAAACATAGCTATTGAGATGAATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATACAGTGTTTAAACAGAGCAAACATAGCTATTGAGATGAATCA  281

seq1  GGGACTGAGTTAGAGGAAAGTCTACACTGACGAATTCTAAAGCCCAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAGTTAGAGGAAAGTCTACACTGACGAATTCTAAAGCCCAGAAA  331

seq1  TATGTTGGAATTGCTCTCAAGTATATACAAAATAATCTGCTCAATCCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGAATTGCTCTCAAGTATATACAAAATAATCTGCTCAATCCTTC  381

seq1  TCATCGATTTTTGTCATCCTTCTGCTTGTTTTTGAGTGATCTGTAATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGATTTTTGTCATCCTTCTGCTTGTTTTTGAGTGATCTGTAATTAA  431

seq1  CACATTGATCACTACCTCAAGCTCCCTCTTGTTTGCATGCAAATAATAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATCACTACCTCAAGCTCCCTCTTGTTTGCATGCAAATAATAGC  481

seq1  TTTGCAAAATTAAAAAATAAATTATTCCCTCAAACTAGAGAAATAGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAATTAAAAAATAAATTATTCCCTCAAACTAGAGAAATAGTCCT  531

seq1  CATACAATTTTGATTTCACTATTAATTTTCAGCAAAGACCTTCAGTCTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTTTGATTTCACTATTAATTTTCAGCAAAGACCTTCAGTCTAC  581

seq1  AGGCAGCATAAATGAACATATAGAAAACAGGAGGGAAAATCAGCCCCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCATAAATGAACATATAGAAAACAGGAGGGAAAATCAGCCCCAGG  631

seq1  TGATAATAAATTCTGAGTCCCTTCCAGTGTGCCAGGGAACAAGCCACCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAAATTCTGAGTCCCTTCCAGTGTGCCAGGGAACAAGCCACCAA  681

seq1  TATTCATCAGGCTGCCCCACCCCCAACCTGATGGTCCCTATAAATATTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAGGCTGCCCCACCCCCAACCTGATGGTCCCTATAAATATTGT  731

seq1  AAAGTACCATATACATTGTGAGCTATTACTATCGTTATGGTATGTCAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCATATACATTGTGAGCTATTACTATCGTTATGGTATGTCAACA  781

seq1  GGTTTCAAGTACCACTTACTGTCCTGTAGTGGAACCTGGGGAAGGCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAGTACCACTTACTGTCCTGTAGTGGAACCTGGGGAAGGCAGGG  831

seq1  AGGGTGTGTTACCTATGATGAAAAGACCCTGCCCAGTGGAACCTGCCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGTTACCTATGATGAAAAGACCCTGCCCAGTGGAACCTGCCTTT  881

seq1  CATCAATCCCAGCCACTTGAGAGACCGAGGTAAGAGAATCACATATTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCCCAGCCACTTGAGAGACCGAGGTAAGAGAATCACATATTAAA  931

seq1  GAGCAGGGCCACATAGTGAATTC  1122
      |||||||||||||||||||||||
seq2  GAGCAGGGCCACATAGTGAATTC  954