BAC Information

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BAC

Clone NameB6Ng01-142M04
Chromosome14 (Build37)14 (Build37)
Map Location 44,054,895 - 44,055,90644,039,459 - 44,040,574
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Downstream geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142M04.bB6Ng01-142M04.g
ACCDH940875DH940876
length1,0051,122
definitionDH940875|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M04, 5' end.DH940876|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,054,895 - 44,055,906)(44,039,459 - 44,040,574)
sequence
gaattctatgaaatgcattgtttgcatttgtgacaatgttgcaaggtgca
cataatagatgctataacagcctatgtaataatacatggcagtatataat
attatacaaaagctcgaggcctgagttcagagtcctatcacccctatcta
aagcttctcatggagtcatgcacctgtaataacagcagtggggcaacacc
taaaaaatccctgagtacactggggagtgtagccaattgctgaggtccct
gatcagtgagagacctattcttgaaaattacaatgttaatgtatttgagg
cagattcccagtagcgacctctgacctcaacttgcatgcacaactccaac
ccccctaaaagaacattgtcatgaagcactactgactaatgtattgatgt
catcccttgtaaacttagtattcttcatcatgtcttcggcttccactctg
ttcaagcaactttctgacagttcattgcttggtgtcttctctctaaaagt
tggtttctgtagagtaaattgaattatttcattatgttttttttttttat
catcttcttacactcccggttttatcctcctccaggtctactatctgact
cttccccaccccatacctctatccagaccccgtctctacctggatgttcc
cacgccatccacaactgtcaccccactagccctaccctcccttgggcctc
cagtcttttaagggttaggtgcatcttctctgactgaacttagacctggt
agtcctttgctgtatatgtgtttggagcctcataaacgctgatgtatgct
gcctggttggtggttcagggtctgacaggtctctgggatctaagttaatt
gtgtctgctgttcctgctacagggtcaccctgccctcagcatacatgttc
ttttgggtcccagttacatcactcagtatgatagtttgtagttcccccca
tgtacatgcaaatctcagatgtctgtgctagtagctagtagtattcactg
tgtaa
gaattcttaagattgcatggctggtgttgtgggtatctggtggtagtcag
ctgactgtgcgccctagctacccaggtgctgctcggaccataaggggctt
gtgcccctactcagaccgggtttttgcttccctgactaatgcagtctcaa
gtcccacccgattggactggtgcagatgctgtgttccactcaccagaagt
cttaagattgcttggcgggtgttgtgggtagctggtggtagtcagatgac
tgtgcgccctagctaccctgtgctgatcggaccggaaggggctcaccttt
aaattctcttaagttagtatgtaaataatgatatcattgtgtaacgatga
tttaatttttcacaccaagaaatagaatgttgctttctttttcttggacc
taaatggttaaatggaaccaatgatggaaatcttctgtcaaagttccctc
tctaaagaaaattcttttgattcctgactaaggaacagagtgtggtgtgt
gtttctggttgaggcctcttaacaagttaaggaactaaactagatttcct
ttttagaaacccataaaagtgtgccatcttgtatcaaaagtttcttctga
gtgtgatgagaacaacgtttttttttttccccacagagatattgtcaaga
ctgaagcttctgtgtgcaaagcagagatctgctctacctttcccaactca
gtccatgactcagtttatgttcaaataatgtatgaccttattagtgatgc
aacatagatgaatacctcctgtattctcctcatgggaatagtctagacca
gagtgagattatttttctctttctgactctctctttgtccctttattatg
tttctgtttgcgtctgtctctcttgtctctgtctatctctgtctctctgt
ccctgtctctctctctctctctcatggcggtttgagatagtgtttctgtg
tttatccaagctggtctctaacctcacctctatacaccatgttgtcctgg
gagatttcaaggtaaaattatgccaccaccaatggcctactgcctgattc
ttaagaaatctattatccctttagagattagtggtaagttcattttaaag
tactctgagcccttgttcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44054895_44055906
seq2: B6Ng01-142M04.b_47_1051

seq1  GAATTCTATGAAATGCATTGTTTGCATTTGTGACAATGTTGCAAGGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAATGCATTGTTTGCATTTGTGACAATGTTGCAAGGTGCA  50

seq1  CATAATAGATGCTATAACAGCCTATGTAATAATACATGGCAGTATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGATGCTATAACAGCCTATGTAATAATACATGGCAGTATATAAT  100

seq1  ATTATACAAAAGCTCGAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAAAAGCTCGAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTA  150

seq1  AAGCTTCTCATGGAGTCATGCACCTGTAATAACAGCAGTGGGGCAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCATGGAGTCATGCACCTGTAATAACAGCAGTGGGGCAACACC  200

seq1  TAAAAAATCCCTGAGTACACTGGGGAGTGTAGCCAATTGCTGAGGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCCCTGAGTACACTGGGGAGTGTAGCCAATTGCTGAGGTCCCT  250

seq1  GATCAGTGAGAGACCTATTCTTGAAAATTACAATGTTAATGTATTTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGAGAGACCTATTCTTGAAAATTACAATGTTAATGTATTTGAGG  300

seq1  CAGATTCCCAGTAGCGACCTCTGACCTCAACTTGCATGCACAACTCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCAGTAGCGACCTCTGACCTCAACTTGCATGCACAACTCCAAC  350

seq1  CCCCCTAAAAGAACATTGTCATGAAGCACTACTGACTAATGTATTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAAAAGAACATTGTCATGAAGCACTACTGACTAATGTATTGATGT  400

seq1  CATCCCTTGTAAACTTAGTATTCTTCATCATGTCTTCGGCTTCCACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGTAAACTTAGTATTCTTCATCATGTCTTCGGCTTCCACTCTG  450

seq1  TTCAAGCAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCTAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAACTTTCTGACAGTTCATTGCTTGGTGTCTTCTCTCTAAAAGT  500

seq1  TGGTTTCTGTAGAGTAAATTGAATTATTTCATTATGTTTTTTTTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGTAGAGTAAATTGAATTATTTCATTATGTTTTTTTTTTTTAT  550

seq1  CATCTTCTTACACTCCCGGTTTTATCCTCCTCCAGGTCTACTATCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTACACTCCCGGTTTTATCCTCCTCCAGGTCTACTATCTGACT  600

seq1  CTTCCCCACCCCATACCTCTATCCAGACCCCGTCTCTACCTGGATGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCACCCCATACCTCTATCCAGACCCCGTCTCTACCTGGATGTTCC  650

seq1  CACGCCATCCACAACTGTCACCCCACTAGCCCTACCCTCCCTTGGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCATCCACAACTGTCACCCCACTAGCCCTACCCTCCCTTGGGCCTC  700

seq1  CAGTCTTTTAAGGGTTAGGTGCATCTTCTCTGACTGAACTTAGACCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTAAGGGTTAGGTGCATCTTCTCTGACTGAACTTAGACCTGGT  750

seq1  AGTCCTTTGCTGTATATGTGTTTGGAGCCTCATAAACGCTGATGTATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTGCTGTATATGTGTTTGGAGCCTCATAAACGCTGATGTATGCT  800

seq1  GCCTGGTTGGTGGTTCAGGGTCTGACAGGTCTCTGGGATCTAAGTTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTGGTGGTTCAGGGTCTGACAGGTCTCTGGGATCTAAGTTAATT  850

seq1  GTGTCTGCTGTTCCTGCTACAGGGTCACCCTGCCCCTCAGCATACATGTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTCTGCTGTTCCTGCTACAGGGTCACCCTG-CCCTCAGCATACATGTT  899

seq1  CTTTTGGGTCCCAGTTACATCACTCAGTATGATAGTTTGTAGTTCCCCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTCCCAGTTACATCACTCAGTATGATAGTTTGTAGTTCCCCCC  949

seq1  ATGTACATGCAAATCTCAGGATGTCCTTGTGCTTAGTAGCTTAGTAGTAT  1000
      |||||||||||||||||| ||||||  ||||| ||||||| |||||||||
seq2  ATGTACATGCAAATCTCA-GATGTC--TGTGC-TAGTAGC-TAGTAGTAT  994

seq1  TCCACTGTGTAA  1012
      | ||||||||||
seq2  T-CACTGTGTAA  1005

seq1: chr14_44039459_44040574
seq2: B6Ng01-142M04.g_69_1190 (reverse)

seq1  AAATGAACAAAGGCTC-CAGTCACTGTTACAATGAACTT-CCACTATACT  48
      |||||||||| |||||  ||| ||| ||| ||||||||| ||||||  ||
seq2  AAATGAACAAGGGCTCAGAGT-ACT-TTAAAATGAACTTACCACTAATCT  48

seq1  -TTAAGGTATATATGATTTCTT-AGAATCAGGCAGTAGG-CATTTGTGGT  95
       | |||| |||   |||||||| |||||||||||||||| |||| |||||
seq2  CTAAAGGGATAATAGATTTCTTAAGAATCAGGCAGTAGGCCATTGGTGGT  98

seq1  -GCATAATTTTACCT--GAATCTCCCAAGGACAGCATGGTGTATAGA-GT  141
       ||||||||||||||   |||||||| |||||| ||||||||||||| ||
seq2  GGCATAATTTTACCTTGAAATCTCCC-AGGACAACATGGTGTATAGAGGT  147

seq1  GAGG-TAGAGACCAGCTTGGAATAAACACAGAAACACTATCTCAAAACCG  190
      |||| ||||||||||||||| |||||||||||||||||||||| ||||||
seq2  GAGGTTAGAGACCAGCTTGG-ATAAACACAGAAACACTATCTC-AAACCG  195

seq1  CCATGAGAGAGAGAGAGAGAGACAGGGACAGAGAGACAGAGATAGACAGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAGAGAGAGAGAGAGACAGGGACAGAGAGACAGAGATAGACAGA  245

seq1  GAC-AGAGAGACAGACGCAAACAGAAACATAATTAAGGGACAAAGAGAGA  289
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACAAGAGAGACAGACGCAAACAGAAACATAATAAAGGGACAAAGAGAGA  295

seq1  GTCAGAAAGAGAAAAATAATCTCACTCTGGTCTAGACTATTCCCATGAGG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGAGAAAAATAATCTCACTCTGGTCTAGACTATTCCCATGAGG  345

seq1  AGAATACAGGAGGTATTCATCTATGTTGCATCACTAATAAGGTCATACAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGGAGGTATTCATCTATGTTGCATCACTAATAAGGTCATACAT  395

seq1  TATTTGAACATAAACTGAGTCATGGACTGAGTTGGGAAAGGTAGAGCAGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAACATAAACTGAGTCATGGACTGAGTTGGGAAAGGTAGAGCAGA  445

seq1  TCTCTGCTTTGCACACAGAAGCTTCAGTCTTGACAATATCTCTGTGGGGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGCACACAGAAGCTTCAGTCTTGACAATATCTCTGTGGGGA  495

seq1  AAAAAAAAAACGTTGTTCTCATCACACTCAGAAGAAACTTTTGATACAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACGTTGTTCTCATCACACTCAGAAGAAACTTTTGATACAAG  545

seq1  ATGGCACACTTTTATGGGTTTCTAAAAAGGAAATCTAGTTTAGTTCCTTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACTTTTATGGGTTTCTAAAAAGGAAATCTAGTTTAGTTCCTTA  595

seq1  ACTTGTTAAGAGGCCTCAACCAGAAACACACACCACACTCTGTTCCTTAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAAGAGGCCTCAACCAGAAACACACACCACACTCTGTTCCTTAG  645

seq1  TCAGGAATCAAAAGAATTTTCTTTAGAGAGGGAACTTTGACAGAAGATTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCAAAAGAATTTTCTTTAGAGAGGGAACTTTGACAGAAGATTT  695

seq1  CCATCATTGGTTCCATTTAACCATTTAGGTCCAAGAAAAAGAAAGCAACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGGTTCCATTTAACCATTTAGGTCCAAGAAAAAGAAAGCAACA  745

seq1  TTCTATTTCTTGGTGTGAAAAATTAAATCATCGTTACACAATGATATCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCTTGGTGTGAAAAATTAAATCATCGTTACACAATGATATCAT  795

seq1  TATTTACATACTAACTTAAGAGAATTTAAAGGTGAGCCCCTTCCGGTCCG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATACTAACTTAAGAGAATTTAAAGGTGAGCCCCTTCCGGTCCG  845

seq1  ATCAGCACAGGGTAGCTAGGGCGCACAGTCATCTGACTACCACCAGCTAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACAGGGTAGCTAGGGCGCACAGTCATCTGACTACCACCAGCTAC  895

seq1  CCACAACACCCGCCAAGCAATCTTAAGACTTCTGGTGAGTGGAACACAGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACACCCGCCAAGCAATCTTAAGACTTCTGGTGAGTGGAACACAGC  945

seq1  ATCTGCACCAGTCCAATCGGGTGGGACTTGAGACTGCATTAGTCAGGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACCAGTCCAATCGGGTGGGACTTGAGACTGCATTAGTCAGGGAA  995

seq1  GCAAAAACCCGGTCTGAGTAGGGGCACAAGCCCCTTATGGTCCGAGCAGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACCCGGTCTGAGTAGGGGCACAAGCCCCTTATGGTCCGAGCAGC  1045

seq1  ACCTGGGTAGCTAGGGCGCACAGTCAGCTGACTACCACCAGATACCCACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTAGCTAGGGCGCACAGTCAGCTGACTACCACCAGATACCCACA  1095

seq1  ACACCAGCCATGCAATCTTAAGAATTC  1116
      |||||||||||||||||||||||||||
seq2  ACACCAGCCATGCAATCTTAAGAATTC  1122