BAC Information

Click to search

BAC

Clone NameB6Ng01-143A08
Chromosome14 (Build37)
Map Location 12,479,197 - 12,573,412
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A08.bB6Ng01-143A08.g
ACCDH941069DH941070
length1,2271,087
definitionDH941069|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A08, 5' end.DH941070|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,572,160 - 12,573,412)(12,479,197 - 12,480,291)
sequence
gaattccataagaggttgtgttcatttgtttttaagacaaaacttaagga
gagagagagagagagagagagagagagagagagagagagaggtaggtctc
aagctctgcaccaagcctttggtcctgccatccgtggaatcagggcgagc
ataagacaaacacagagcaaatggcttggcgtgctctctgacctccactc
aacattatgggaaccgaaagcttcatttttgggaaaatgacaaagcttcg
tcattatgcatctaattttctccttattctgctaggggaaactctctatg
cagtgtagaagaaacagactccaatccctctcaattgaacccaagcttct
ctcactgccaacctcagcaagcaagcaaacaaacaaacaaacaagacctg
aagaaaaaagagaggagctgaagggtggctcagaggttaagaacactgac
tgctcttccagaggtcctgaactcaattcccagcaaccacatggtggctc
acaaccatctgtaatgggatctgatgccctcttctgaggtgtttgaagag
agcaatggtacgcatatacaataaataaataaataaataaataaataaat
aaataaataaataaataaatctatctttgaaaaatagaagaaacaagaga
ggaacccgcggaagagcaaaagcaatggagatgctgtgcgcagaaatcac
aggcagaagaggagcgctctcatggatggagagtacgagcgggtagatcc
catcacgcagaactgaagaccccacacacgactaaaagtaagcagaggtg
tgacaaagaggacccagtcatcagcaaaagaaggtgactcctatataatc
aaatgacagtgagggggcacctttcattttcttcagccccccaaatttaa
gcagctaatttttcattgcattaagataggaatcacggggctgggataga
tggttggctggaaagatgggttattcttaagagcactggctattcttcag
atgacccacattcattttctgcacatttgacagttcacaacatctatgac
ttcagtcagggtgatctagtgccctttctgccaacatggcatgagtcata
tacatgatacacagactttcatgctgccagaccattactatagataaaca
gtggaaaccctagtaagttaggatctgatgaattcccctaaaccttccca
ttaatcattccccttttgagtgtaaat
gaattccttctttgtccaagaatagatagtagacttcattttgaacgtta
ctgatgattaagaggtataaacgtattagaactctagaactcatgttgat
atgattgtaaagttctgtgttatctgcacactgtataagagtgtcaggat
cagcttagtgggatttatttagtctcttacctaaactcactgtctctagt
tcttcattcatgtatgtgttgcaaaactcctttaaaataaactcatttat
aagtcaatgacttcagtaattctaaactagagagaaaagatattaggctt
aacagaaattataactattatgtgagaaagatccggggtcttgagggaga
tgaacattaaccagcctgagagcaatgctttggggttttgatgtgttctc
caaaggtagcagagtggtaatatgcgggaagacttactgacctggaggct
caatgaactaaatgccccctaactagtctttggagaggtcttgtatagag
tgtttctcattgccgtgataaaatacttggcagaaacagctattgggcaa
cacagcctaccctggcaggggagcttgacagcaggaacatgggggagtcg
gccacatttcacctggtatcaagaagcagagaaatgtgtgcatgctaatg
ttcagattcgttttgttccgtctaggatcccaatgcatggaatggtactg
cccacattttatggtgaattattctgtgttggttcaactctatgaatgct
gtcatgtacacacagagatgtttgtctcctagacagtattaatcatcacc
tagcaaaattatttaacatcagcaataggaacaataacaacacctacctc
atgatattggtaaaggtttaaagggaatgattcagaaagggcatccaggg
taatacctgggtccttgtaaataattgtatatatataatattatgtatta
ttttatattagaagagagcgaagatgctcatgcaacctattaaatgactg
ggaactgtttcttccgatttggccttgggctcaagctcaggcttcatgca
tgtaagcatcatctatactatggaattatatccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12572160_12573412
seq2: B6Ng01-143A08.b_49_1275 (reverse)

seq1  ATTTACACTCAAAAAGGGAAATTGGATTTAATTGGATGATTTTATGTAGA  50
      |||||||||||||| |||||  ||   ||||| ||| | |||   |  ||
seq2  ATTTACACTCAAAAGGGGAA--TG--ATTAATGGGAAGGTTT--AGGGGA  44

seq1  ATTTTAATTCAGAATTCTTATACTTACTAGTGGTTTCCTACTTGTTTTTA  100
      |||     |||||  || || ||||||||| ||||||| ||   | ||||
seq2  ATT---CATCAGA--TCCTA-ACTTACTAG-GGTTTCC-AC---TGTTTA  83

seq1  TCTTATATGTATTGTGTCTTGCATGCATGAAAGTCTGTGTATCATGTATA  150
      || |||| ||| || |||| ||| ||||||||||||||||||||||||||
seq2  TC-TATA-GTAATG-GTCTGGCA-GCATGAAAGTCTGTGTATCATGTATA  129

seq1  TGACTCATGCCCATGGTTGGCCAGAAAAGGGCACTAGATCACCTGGAACT  200
      ||||||||| |||| ||||| ||| ||||||||||||||||||  | |||
seq2  TGACTCATG-CCAT-GTTGG-CAG-AAAGGGCACTAGATCACCCTG-ACT  174

seq1  GGAGTCATAGATGGTTGTGAACTGTCAAATGGTGGCAGATAATTGAATGT  250
      | |||||||||| ||||||||||||||||||   ||||| || |||||||
seq2  GAAGTCATAGAT-GTTGTGAACTGTCAAATG--TGCAGA-AAATGAATGT  220

seq1  GGGTCATCTGGAAGAATAGCCAGTGCTCTTAAGAATAA-CCATCTATCCA  299
      ||||||||| |||||||||||||||||||||||||||| |||||| ||||
seq2  GGGTCATCT-GAAGAATAGCCAGTGCTCTTAAGAATAACCCATCTTTCCA  269

seq1  GCCAACCATCTAT-CCAGCCCCGTGAATTCCTATCTTAATGCAATGAAAA  348
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GCCAACCATCTATCCCAGCCCCGTG-ATTCCTATCTTAATGCAATGAAAA  318

seq1  ATTAGCTGCTTAAATTTGGGGGGCTGAAGAAAATGAAAGGTGCCCCCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGCTTAAATTTGGGGGGCTGAAGAAAATGAAAGGTGCCCCCTCA  368

seq1  CTGTCATTTGATTATATAGGAGTCACCTTCTTTTGCTGATGACTGGGTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTGATTATATAGGAGTCACCTTCTTTTGCTGATGACTGGGTCC  418

seq1  TCTTTGTCACACCTCTGCTTACTTTTAGTCGTGTGTGGGGTCTTCAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCACACCTCTGCTTACTTTTAGTCGTGTGTGGGGTCTTCAGTTC  468

seq1  TGCCTGATGGGATCTACCCGCTCGTACTCTCCATCCATGAGAGCGCTCCT  548
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGATGGGATCTACCCGCTCGTACTCTCCATCCATGAGAGCGCTCCT  518

seq1  CTTCTGCCTGTGATTTCTGCGCACAGCATCTCCATTGCTTTTGCTCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTGTGATTTCTGCGCACAGCATCTCCATTGCTTTTGCTCTTCC  568

seq1  GCGGGTTCCTCTCTTGTTTCTTCTATTTTTCAAAGATAG----ATTTATT  644
      |||||||||||||||||||||||||||||||||||||||    |||||||
seq2  GCGGGTTCCTCTCTTGTTTCTTCTATTTTTCAAAGATAGATTTATTTATT  618

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTATATGCGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTATATGCGT  668

seq1  ACCATTGCTCTCTTCAAACACCTCAGAAGAGGGCATCAGATCCCATTACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTCTCTTCAAACACCTCAGAAGAGGGCATCAGATCCCATTACA  718

seq1  GATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAGTTCAGGACCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAGTTCAGGACCTCT  768

seq1  GGAAGAGCAGTCAGTGTTCTTAACCTCTGAGCCACCCTTCAGCTCCTCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGTCAGTGTTCTTAACCTCTGAGCCACCCTTCAGCTCCTCTC  818

seq1  TTTTTTCTTCAGGTCTTGTTTGTTTGTTTGTTTGCTTGCTTGCTGAGGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCAGGTCTTGTTTGTTTGTTTGTTTGCTTGCTTGCTGAGGTT  868

seq1  GGCAGTGAGAGAAGCTTGGGTTCAATTGAGAGGGATTGGAGTCTGTTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGAGAAGCTTGGGTTCAATTGAGAGGGATTGGAGTCTGTTTCT  918

seq1  TCTACACTGCATAGAGAGTTTCCCCTAGCAGAATAAGGAGAAAATTAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTGCATAGAGAGTTTCCCCTAGCAGAATAAGGAGAAAATTAGAT  968

seq1  GCATAATGACGAAGCTTTGTCATTTTCCCAAAAATGAAGCTTTCGGTTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATGACGAAGCTTTGTCATTTTCCCAAAAATGAAGCTTTCGGTTCC  1018

seq1  CATAATGTTGAGTGGAGGTCAGAGAGCACGCCAAGCCATTTGCTCTGTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTTGAGTGGAGGTCAGAGAGCACGCCAAGCCATTTGCTCTGTGT  1068

seq1  TTGTCTTATGCTCGCCCTGATTCCACGGATGGCAGGACCAAAGGCTTGGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATGCTCGCCCTGATTCCACGGATGGCAGGACCAAAGGCTTGGT  1118

seq1  GCAGAGCTTGAGACCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTGAGACCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1168

seq1  CTCTCTCTCTCCTTAAGTTTTGTCTTAAAAACAAATGAACACAACCTCTT  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCCTTAAGTTTTGTCTTAAAAACAAATGAACACAACCTCTT  1218

seq1  ATGGAATTC  1253
      |||||||||
seq2  ATGGAATTC  1227

seq1: chr14_12479197_12480291
seq2: B6Ng01-143A08.g_68_1154

seq1  GAATTCCTTCTTTGTCCAAGAATAGATAGTAGACTTCATTTTGAACGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTTGTCCAAGAATAGATAGTAGACTTCATTTTGAACGTTA  50

seq1  CTGATGATTAAGAGGTATAAACGTATTAGAACTCTAGAACTCATGTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGAGGTATAAACGTATTAGAACTCTAGAACTCATGTTGAT  100

seq1  ATGATTGTAAAGTTCTGTGTTATCTGCACACTGTATAAGAGTGTCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGTAAAGTTCTGTGTTATCTGCACACTGTATAAGAGTGTCAGGAT  150

seq1  CAGCTTAGTGGGATTTATTTAGTCTCTTACCTAAACTCACTGTCTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGTGGGATTTATTTAGTCTCTTACCTAAACTCACTGTCTCTAGT  200

seq1  TCTTCATTCATGTATGTGTTGCAAAACTCCTTTAAAATAAACTCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCATGTATGTGTTGCAAAACTCCTTTAAAATAAACTCATTTAT  250

seq1  AAGTCAATGACTTCAGTAATTCTAAACTAGAGAGAAAAGATATTAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGACTTCAGTAATTCTAAACTAGAGAGAAAAGATATTAGGCTT  300

seq1  AACAGAAATTATAACTATTATGTGAGAAAGATCCGGGGTCTTGAGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATTATAACTATTATGTGAGAAAGATCCGGGGTCTTGAGGGAGA  350

seq1  TGAACATTAACCAGCCTGAGAGCAATGCTTTGGGGTTTTGATGTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTAACCAGCCTGAGAGCAATGCTTTGGGGTTTTGATGTGTTCTC  400

seq1  CAAAGGTAGCAGAGTGGTAATATGCGGGAAGACTTACTGACCTGGAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAGCAGAGTGGTAATATGCGGGAAGACTTACTGACCTGGAGGCT  450

seq1  CAATGAACTAAATGCCCCCTAACTAGTCTTTGGAGAGGTCTTGTATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTAAATGCCCCCTAACTAGTCTTTGGAGAGGTCTTGTATAGAG  500

seq1  TGTTTCTCATTGCCGTGATAAAATACTTGGCAGAAACAGCTATTGGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCATTGCCGTGATAAAATACTTGGCAGAAACAGCTATTGGGCAA  550

seq1  CACAGCCTACCCTGGCAGGGGAGCTTGACAGCAGGAACATGGGGGAGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTACCCTGGCAGGGGAGCTTGACAGCAGGAACATGGGGGAGTCG  600

seq1  GCCACATTTCACCTGGTATCAAGAAGCAGAGAAATGTGTGCATGCTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTTCACCTGGTATCAAGAAGCAGAGAAATGTGTGCATGCTAATG  650

seq1  TTCAGATTCGTTTTGTTCCGTCTAGGATCCCAATGCATGGAATGGTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCGTTTTGTTCCGTCTAGGATCCCAATGCATGGAATGGTACTG  700

seq1  CCCACA-TTTATGGTGAATTATTCTGTGTTGGTTCAACTCTATGAATGCT  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTTTATGGTGAATTATTCTGTGTTGGTTCAACTCTATGAATGCT  750

seq1  GTCATGTACACACAGAGATGTTTGTCTCCTAGACAGTATTAATCATCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTACACACAGAGATGTTTGTCTCCTAGACAGTATTAATCATCACC  800

seq1  TAGCAAAATTATTTAACATCAGCAATAGGAACAATAACAACACCTACCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAATTATTTAACATCAGCAATAGGAACAATAACAACACCTACCTC  850

seq1  ATGATATTGGTAAAAGGTTTAAAGGGAATGATTCAGAAAGGGCATCCAGG  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTGGT-AAAGGTTTAAAGGGAATGATTCAGAAAGGGCATCCAGG  899

seq1  GTAATACCTGGGTCCATGTAAAATAATGTATATATAATATATTATGTATA  949
      ||||||||||||||| ||||||  | ||||||||||  ||||||||||| 
seq2  GTAATACCTGGGTCCTTGTAAATAATTGTATATATATAATATTATGTAT-  948

seq1  TATTATATATATAG-AGAGAGCAGAAGATGTCTCATGCAACCTATTAAAT  998
      |||| ||||| ||| ||||||| ||||||| |||||||||||||||||||
seq2  TATTTTATAT-TAGAAGAGAGC-GAAGATG-CTCATGCAACCTATTAAAT  995

seq1  GACTGGGAACATGTTTCTTCTGATTTGGGCCTTGGGGCTCAAGCTCAGGC  1048
      |||||||||| ||||||||| ||||| |||||| ||||||||||||||||
seq2  GACTGGGAAC-TGTTTCTTCCGATTT-GGCCTT-GGGCTCAAGCTCAGGC  1042

seq1  TTCATGCATGGTAGCATCCATCTTTACTATTGAATTATATCCTATTT  1095
      ||||||||||  ||||| ||||| |||||| ||||||||||| ||||
seq2  TTCATGCATGTAAGCAT-CATCTATACTATGGAATTATATCC-ATTT  1087