BAC Information

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BAC

Clone NameB6Ng01-143C10
Chromosome14 (Build37)
Map Location 12,896,222 - 13,023,558
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026, EG328354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C10.bB6Ng01-143C10.g
ACCDH941162DH941163
length1,0851,082
definitionDH941162|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C10, 5' end.DH941163|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,022,447 - 13,023,558)(12,896,222 - 12,897,332)
sequence
gaattctctactccactgctgtggctctctcgcctaatgctgatgctgcc
ctacactaaccctgaggtatttgcttcttcaacaaggattttactttgta
gatgggcaaagggacgaacatttttattaccttttagtcttagactgaat
atcttagtatagaccaggcgagcgtcacacagccatgacagtaatatttt
gtcacaggcatcacataaaacagagaacaaaagagaaagcaaccgtgggg
gtcccgtggtgcctcacttacccgggatgggaataataggaacactttcg
ttggggaccacccgaggtgaactgctgtcttccacatagaaatgagcagt
ctgaaaacattttctgtgtggaaaagaaaaagatgccaacagtgagcaca
gaaagaagtacactttgtctaagtttatcatttcaagatccttctttaac
agtttttcccagcttgaaacatcacatagcactgatgctgatggcaaacc
caaggaaaaatagaacaaatgcaagcacagcgtttagcacactggagcaa
ccccaaatgtctgaatagccatctcttattacagccaactccaaccccag
agctccaaactactcaaataagtgagaatttggcacagagtaaactcctg
tacaagacacgaggattctacccaatatctctacagctggatcattacag
agggactgtctgagcttctgactaacagcccccaagtaccaagttcaaaa
cctcaccttgaatcccttccaatatagtcatcaaacagcccaactgtaca
atagcaccacattgtctgtgcttagctaaggccccaaatcctcagacggc
ttttaaaggggtaagggggcttcaataggaaaagcatgcccaaatcagag
gccctttccggacgacagctcagctgcagtgatttctgcttgctttagtc
agctttgttttactgtactcagcaagcagagcacacagtgtcatcatagg
acagcagtgacagaagctatgagcagtcacgcagctctgctgaatgctgc
agctcagcttccagcatcacgtcactgctgctggg
gaattccagataagccacagttatgtgaagaaacggtcttaaaaaaaaaa
tcacagttcatgagtgcatcctttggatataggatcaggaccaaagcaga
atttggttatttcttcaagagttttacaatggtcttagtgggttttgcta
tgtttgatttaaccatggactttaagcatgaggcgtcttatacattgtta
ctgtcccacactcagtcattggtcaggtgtctgaaatgctcatggaaggt
gtaggctttgagcccagtgctctgtccatgctggtagtgtgtatcatatc
ctcatctagaaggtggcagttgctcaccagggtcctgtgaatgaaatgta
gatgttttagtctggccccaaaccatccttgcaggtggatcttttcctac
cataaacatccccctcagtggattcacatcaccgtgagacaatgaactac
ttaaaatgccccgtctttaatgctaacactattctgaaatgagtctgttc
ttccaccaagtgcacaaaccagtttctccatagtaaacctcgtcactgtt
caaagctatcttctgaagggtagactgcacactaggccatctcttttctt
tctttctttctttttttaaagatttatttatttattatatgtaagtacac
tgtagctgtcttcagacactccagaagagggcatcagattttgttacgga
tggttgagagccaccatgtggttgctgggatttgaactctggaccttcag
aagagtagttggcgctcttaaccactgagccatctcgccagcccccggcc
atctcttttcttgaaggagtcattggaggtggacactaacccacatattc
attgatttccccccccgccccgtcccccggtatgtttaaaatttatttgt
tctaagctccctgctttttattgtttatctaaagtgtttgttttctagct
catcctccattgtctaatgccagaggcatatagtcatcattttctcatct
tagtactgtcgggtgctagctgcatatatactagcagtatgccacattta
aagcctctaaataaatttaatgtaaagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_13022447_13023558
seq2: B6Ng01-143C10.b_49_1133 (reverse)

seq1  CCCAGCAAGCAGTGACGTGGATGCTGGAAAGCTGAGGGCTGGCCAGCATC  50
      |||||| ||||||||||| |||||||| |||||||  ||||  |||||| 
seq2  CCCAGC-AGCAGTGACGT-GATGCTGG-AAGCTGA--GCTG--CAGCAT-  42

seq1  TCAGGCAGAGGCTGCGTGAACTGCTCATAGCCTTTCTGTTCACTGCCTGT  100
      ||| ||||| |||||||| ||||||||||||  ||||| |||||| ||||
seq2  TCA-GCAGA-GCTGCGTG-ACTGCTCATAGC--TTCTG-TCACTG-CTGT  85

seq1  CCTATGATGACCACTGTGTGCTCCCTGCTTTGCTTGAAGTACAGGTAAAA  150
      |||||||||| |||||||||||  |||| |||||   |||||||   |||
seq2  CCTATGATGA-CACTGTGTGCT--CTGC-TTGCT--GAGTACAG--TAAA  127

seq1  ACAAAGCTGAACTAAAGGCAAGCAGAAATCACCTGCAGGCTGAGCTGTCG  200
      ||||||||| |||||| |||||||||||||| ||||| ||||||||||||
seq2  ACAAAGCTG-ACTAAA-GCAAGCAGAAATCA-CTGCA-GCTGAGCTGTCG  173

seq1  TCCGGAAAGGGCCTCTGATTTGGGCATGCTTTTCCTATTGAAGCCCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAAAGGGCCTCTGATTTGGGCATGCTTTTCCTATTGAAGCCCCCTT  223

seq1  ACCCCTTTAAAAGCCGTCTGAGGATTTGGGGCCTTAGCTAAGCACAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTAAAAGCCGTCTGAGGATTTGGGGCCTTAGCTAAGCACAGACA  273

seq1  ATGTGGTGCTATTGTACAGTTGGGCTGTTTGATGACTATATTGGAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCTATTGTACAGTTGGGCTGTTTGATGACTATATTGGAAGGGA  323

seq1  TTCAAGGTGAGGTTTTGAACTTGGTACTTGGGGGCTGTTAGTCAGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGAGGTTTTGAACTTGGTACTTGGGGGCTGTTAGTCAGAAGCT  373

seq1  CAGACAGTCCCTCTGTAATGATCCAGCTGTAGAGATATTGGGTAGAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCCCTCTGTAATGATCCAGCTGTAGAGATATTGGGTAGAATCC  423

seq1  TCGTGTCTTGTACAGGAGTTTACTCTGTGCCAAATTCTCACTTATTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCTTGTACAGGAGTTTACTCTGTGCCAAATTCTCACTTATTTGAG  473

seq1  TAGTTTGGAGCTCTGGGGTTGGAGTTGGCTGTAATAAGAGATGGCTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGAGCTCTGGGGTTGGAGTTGGCTGTAATAAGAGATGGCTATTC  523

seq1  AGACATTTGGGGTTGCTCCAGTGTGCTAAACGCTGTGCTTGCATTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGGGGTTGCTCCAGTGTGCTAAACGCTGTGCTTGCATTTGTTC  573

seq1  TATTTTTCCTTGGGTTTGCCATCAGCATCAGTGCTATGTGATGTTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTTGGGTTTGCCATCAGCATCAGTGCTATGTGATGTTTCAAG  623

seq1  CTGGGAAAAACTGTTAAAGAAGGATCTTGAAATGATAAACTTAGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAAACTGTTAAAGAAGGATCTTGAAATGATAAACTTAGACAAAG  673

seq1  TGTACTTCTTTCTGTGCTCACTGTTGGCATCTTTTTCTTTTCCACACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTTTCTGTGCTCACTGTTGGCATCTTTTTCTTTTCCACACAGA  723

seq1  AAATGTTTTCAGACTGCTCATTTCTATGTGGAAGACAGCAGTTCACCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCAGACTGCTCATTTCTATGTGGAAGACAGCAGTTCACCTCG  773

seq1  GGTGGTCCCCAACGAAAGTGTTCCTATTATTCCCATCCCGGGTAAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCCCAACGAAAGTGTTCCTATTATTCCCATCCCGGGTAAGTGAG  823

seq1  GCACCACGGGACCCCCACGGTTGCTTTCTCTTTTGTTCTCTGTTTTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACGGGACCCCCACGGTTGCTTTCTCTTTTGTTCTCTGTTTTATGT  873

seq1  GATGCCTGTGACAAAATATTACTGTCATGGCTGTGTGACGCTCGCCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGTGACAAAATATTACTGTCATGGCTGTGTGACGCTCGCCTGGT  923

seq1  CTATACTAAGATATTCAGTCTAAGACTAAAAGGTAATAAAAATGTTCGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTAAGATATTCAGTCTAAGACTAAAAGGTAATAAAAATGTTCGTC  973

seq1  CCTTTGCCCATCTACAAAGTAAAATCCTTGTTGAAGAAGCAAATACCTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCCATCTACAAAGTAAAATCCTTGTTGAAGAAGCAAATACCTCA  1023

seq1  GGGTTAGTGTAGGGCAGCATCAGCATTAGGCGAGAGAGCCACAGCAGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGTGTAGGGCAGCATCAGCATTAGGCGAGAGAGCCACAGCAGTGG  1073

seq1  AGTAGAGAATTC  1112
      ||||||||||||
seq2  AGTAGAGAATTC  1085

seq1: chr14_12896222_12897332
seq2: B6Ng01-143C10.g_70_1151

seq1  GAATTCCAGATAAGCCACAGTTATGTGAAGAAACGGTCTTAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAGCCACAGTTATGTGAAGAAACGGTCTTAAAAAAAAAA  50

seq1  TCACAGTTCATGAGTGCATCCTTTGGATATAGGATCAGGACCAAAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTCATGAGTGCATCCTTTGGATATAGGATCAGGACCAAAGCAGA  100

seq1  ATTTGGTTATTTCTTCAAGAGTTTTACAATGGTCTTAGTGGGTTTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTATTTCTTCAAGAGTTTTACAATGGTCTTAGTGGGTTTTGCTA  150

seq1  TGTTTGATTTAACCATGGACTTTAAGCATGAGGCGTCTTATACATTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTTAACCATGGACTTTAAGCATGAGGCGTCTTATACATTGTTA  200

seq1  CTGTCCCACACTCAGTCATTGGTCAGGTGTCTGAAATGCTCATGGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCACACTCAGTCATTGGTCAGGTGTCTGAAATGCTCATGGAAGGT  250

seq1  GTAGGCTTTGAGCCCAGTGCTCTGTCCATGCTGGTAGTGTGTATCATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTTGAGCCCAGTGCTCTGTCCATGCTGGTAGTGTGTATCATATC  300

seq1  CTCATCTAGAAGGTGGCAGTTGCTCACCAGGGTCCTGTGAATGAAATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTAGAAGGTGGCAGTTGCTCACCAGGGTCCTGTGAATGAAATGTA  350

seq1  GATGTTTTAGTCTGGCCCCAAACCATCCTTGCAGGTGGATCTTTTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAGTCTGGCCCCAAACCATCCTTGCAGGTGGATCTTTTCCTAC  400

seq1  CATAAACATCCCCCTCAGTGGATTCACATCACCGTGAGACAATGAACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATCCCCCTCAGTGGATTCACATCACCGTGAGACAATGAACTAC  450

seq1  TTAAAATGCCCCGTCTTTAATGCTAACACTATTCTGAAATGAGTCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCCCCGTCTTTAATGCTAACACTATTCTGAAATGAGTCTGTTC  500

seq1  TTCCACCAAGTGCACAAACCAGTTTCTCCATAGTAAACCTCGTCACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCAAGTGCACAAACCAGTTTCTCCATAGTAAACCTCGTCACTGTT  550

seq1  CAAAGCTATCTTCTGAAGGGTAGACTGCACACTAGGCCATCTCTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATCTTCTGAAGGGTAGACTGCACACTAGGCCATCTCTTTTCTT  600

seq1  TCTTTCTTTCTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACAC  650

seq1  TGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTTGTTACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTTGTTACGGA  700

seq1  TGGTTGAGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAG  750

seq1  AAGAGTAGTTGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCCCCGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGTTGGCGCTCTTAACCACTGAGCCATCTCGCCAGCCCCCGGCC  800

seq1  ATCTCTTTTCTTGAAGGAGTCATTGGAGGTGGACACTAACCCACATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTTCTTGAAGGAGTCATTGGAGGTGGACACTAACCCACATATTC  850

seq1  ATTGATTTCCCCCCCCGCCCCCGTCCCCCGGTATGTTTAAAATTTATTTG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTGATTTCCCCCCCCG-CCCCGTCCCCCGGTATGTTTAAAATTTATTTG  899

seq1  TTCCTAAGCTCCCTGCTTTTTTATTGTTTATTCTAAAGTGTTTTGTTTTT  950
      || ||||||||||||| ||||||||||||| ||||||||||||   ||||
seq2  TT-CTAAGCTCCCTGC-TTTTTATTGTTTA-TCTAAAGTGTTT--GTTTT  944

seq1  CTAGCTCATCCTCCATTGTCTAATGCCAAGAGGCCAATATTAGTCCATCA  1000
      ||||||||||||||||||||||||||| ||||||  ||| |||| |||||
seq2  CTAGCTCATCCTCCATTGTCTAATGCC-AGAGGC--ATA-TAGT-CATCA  989

seq1  TTTTTCTCATCCTTAGTTACTGGTCGGGTGCTTAGCTATGCATATATACC  1050
       ||||||||| ||||| |||| ||||||||| ||||  ||||||||||| 
seq2  -TTTTCTCAT-CTTAG-TACT-GTCGGGTGC-TAGC--TGCATATATAC-  1031

seq1  TAAGCAGTTATGCCACATTTTAAAAGCTTTCTAAAAATAAAATTTAAATG  1100
        ||||| ||||||||||||  |||||   ||  |||||||  || ||||
seq2  -TAGCAG-TATGCCACATTT--AAAGC---CTCTAAATAAA--TTTAATG  1072

seq1  TAAAAGAGAAA  1111
      | |||||||||
seq2  T-AAAGAGAAA  1082