BAC Information

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BAC

Clone NameB6Ng01-143I08
Chromosome14 (Build37)
Map Location 16,330,300 - 16,331,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667152, LOC100042147, Slc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I08.bB6Ng01-143I08.g
ACCDH941435DH941436
length1,2741,142
definitionDH941435|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I08, 5' end.DH941436|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaagaacatcttggctgtaaagatgaaaaggtattcaaggaca
aatagggctatattatctgagtcaacaccatctggccggaacctcccctc
aatccgaggacaagcagggctatcttgtctgagtcaacaccatctggccg
gaacctcccctctgtctattaccccttggcgtcaggtaaagtcatacatc
aactggttgttatgtgaacaaagataagccccaagccctccggaacaaag
tcctgatgccccctttttgctgacctgtaatctttctgttaatgttcaaa
tgagccaatcccgtacctttgtcaaaattcctcgtacccctgaccctttg
cttctttaaaaacccctagcctctgagccccagggttgactcccctgcct
cctgtgtgaggtatgtgtcggcccagagctctgccaataaagccttgtgc
gtcttgcagcaagaaaggattcttgtgtttatgggtgcatcctgtccctg
gactagagtgggggtccccatatttggggccctacataatgaggtaccta
aaggcctggaagacttagacaacaagctttccttcacagactctcttccc
tgcaaaatgtatttaacctcagacccactcttagaagtagggtatggttt
tactcatccactttctgccatgacaataaatgtcttaaaatcatggactg
tctcttttcgttgggatctgcagtggagagccatggagaaggtctttgcc
tatagagccactgtctaatcttttgtagaaggcctctctgcacttctagc
catggctgccataaagccaagctcagccaaccactgacaatccaaaaact
cccccagaaggaccaggtggagttcacctctttttcccctggccccagtt
atcacccagctcgtgggcccccactccatctcagctcttttgtggctagc
agcaggcctgagtgcccaagaccctggagatcagatggctctggctcttg
tagcctgggatctctgagacagctctggctgtctgcacctccgactgtgc
tctaccccagaaggcatcctggggataccctaggacctaccctgctcatg
acctaggggtaggcacagttgacttctgcatcggcctctcccatgtgcca
gtgttctgtgtaaaagacaagtgtgggaaccataccctaacaatctcttc
ctattccagggtacgacactggaactctcagaggtctctggagaggcgtt
caagatctcagagtatgagagatc
gaattctcactgctttgagagaagataatttactcatcagtcagatagac
gggtttatttggtgtcaagggaagtggttagcttttgcttaaggctttcc
tgagtggctatttgtcaaagacaactaatgatcattgcaaatatactatg
gtatattatgaagcttcttattttaaataataaataaagctaacattggc
atcaaggttttgattatatctgatgacatgagtcttctgggtggagtaaa
tggtcaacatgtgatacatactgacctggttcctccagaaaattctactg
tccttctgccagctcaggggtgtgcagtgtggttttcacagtgttttcct
atatctggacatcaagtttgaatgagcctaaagattctcatttgactgaa
atttcttttataagtctggccctgattttaaattcaccttgctcaaataa
tgtttaagctgttatcactgaaatgttaaatttttttactgaatgtaaaa
ttatattcatatcacaaataagtcaggaaaaaatattaaaggttcttcca
agcctcagtatactgagagcttgtctgcccacaccaaggctcactgccca
tttcttctagactaatattcaaagttcttattgtttgaaagagtagattc
caaggtggcaacagaggaaccaagagttttactgaaggactcagagccaa
ttaatttagtaagagaactttagaagcaagaatggagacgtggaagagga
gaacggatgttgccaagggcaaccagagtgtgtgcagacgttcccttctt
acagaacaatcctaagaccctcagtagatatctcagtgacatggcaaagc
cccgggttgagcttgttcacttttctacacacaaacatctgtaatattta
acttttggtaggcacagtagaagtagcatagtaactagcagtaaatgaca
gttaaataggttatattgactatggcttctctcagttatctcctgctgta
gcatcttgttgtgaggaataaaatgatacactgtgtaataacagaaatgg
agggactactaggtcagtgctggctataatataaatgtcattgactcaag
tccagcgaaaggaagtgggatctggtaactcgaatgttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_16330300_16331526
seq2: B6Ng01-143I08.g_66_1207

seq1  GAATTCTCACTGCTTTGAGAGAAGATAATTTACTCATCAGTCAGATAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGCTTTGAGAGAAGATAATTTACTCATCAGTCAGATAGAC  50

seq1  GGGTTTATTTGGTGTCAAGGGAAGTGGTTAGCTTTTGCTTAAGGCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATTTGGTGTCAAGGGAAGTGGTTAGCTTTTGCTTAAGGCTTTCC  100

seq1  TGAGTGGCTATTTGTCAAAGACAACTAATGATCATTGCAAATATACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTATTTGTCAAAGACAACTAATGATCATTGCAAATATACTATG  150

seq1  GTATATTATGAAGCTTCTTATTTTAAATAATAAATAAAGCTAACATTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTATGAAGCTTCTTATTTTAAATAATAAATAAAGCTAACATTGGC  200

seq1  ATCAAGGTTTTGATTATATCTGATGACATGAGTCTTCTGGGTGGAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTTTTGATTATATCTGATGACATGAGTCTTCTGGGTGGAGTAAA  250

seq1  TGGTCAACATGTGATACATACTGACCTGGTTCCTCCAGAAAATTCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAACATGTGATACATACTGACCTGGTTCCTCCAGAAAATTCTACTG  300

seq1  TCCTTCTGCCAGCTCAGGGGTGTGCAGTGTGGTTTTCACAGTGTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCCAGCTCAGGGGTGTGCAGTGTGGTTTTCACAGTGTTTTCCT  350

seq1  ATATCTGGACATCAAGTTTGAATGAGCCTAAAGATTCTCATTTGACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGACATCAAGTTTGAATGAGCCTAAAGATTCTCATTTGACTGAA  400

seq1  ATTTCTTTTATAAGTCTGGCCCTGATTTTAAATTCACCTTGCTCAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTATAAGTCTGGCCCTGATTTTAAATTCACCTTGCTCAAATAA  450

seq1  TGTTTAAGCTGTTATCACTGAAATGTTAAATTTTTTTACTGAATGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGCTGTTATCACTGAAATGTTAAATTTTTTTACTGAATGTAAAA  500

seq1  TTATATTCATATCACAAATAAGTCAGGAAAAAATATTAAAGGTTCTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCATATCACAAATAAGTCAGGAAAAAATATTAAAGGTTCTTCCA  550

seq1  AGCCTCAGTATACTGAGAGCTTGTCTGCCCACACCAAGGCTCACTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGTATACTGAGAGCTTGTCTGCCCACACCAAGGCTCACTGCCCA  600

seq1  TTTCTTCTAGACTAATATTCAAAGTTCTTATTGTTTGAAAGAGTAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAGACTAATATTCAAAGTTCTTATTGTTTGAAAGAGTAGATTC  650

seq1  CAAGGTGGCAACAGAGGAACCAAGAGTTTTACTGAAGGACTCAGAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGCAACAGAGGAACCAAGAGTTTTACTGAAGGACTCAGAGCCAA  700

seq1  TTAATTTAGTAAGAGAACTTTAGAAGCAAGAATGGAGACGTGGAAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGTAAGAGAACTTTAGAAGCAAGAATGGAGACGTGGAAGAGGA  750

seq1  GAACGGATGTTGCCAAGGGCAACCAGAGTGTGTGCAGACGTTCCCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGATGTTGCCAAGGGCAACCAGAGTGTGTGCAGACGTTCCCTTCTT  800

seq1  ACAGAACAATCCTAAGACCCTCAGTAGATATCTCAGTGACATGGCAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAATCCTAAGACCCTCAGTAGATATCTCAGTGACATGGCAAAGC  850

seq1  CCCGGGTTGAGCTTGTTCACTTTTCTACACACAAACATCTGTAATATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTTGAGCTTGTTCACTTTTCTACACACAAACATCTGTAATATTTA  900

seq1  ACTTTTGGTTAGGCACAGTAAGAAGTTAGCAATAGTAACTAGCAGTAAAA  950
      |||||||| |||||||||| ||||| |||| ||||||||||||||| |||
seq2  ACTTTTGG-TAGGCACAGT-AGAAG-TAGC-ATAGTAACTAGCAGT-AAA  945

seq1  TGGAACAGTTAAAATAGGTTATA-TGACTATGGCTTCTCTCAGTATATCT  999
      ||  |||||| |||||||||||| |||||||||||||||||||| |||||
seq2  TG--ACAGTT-AAATAGGTTATATTGACTATGGCTTCTCTCAGT-TATCT  991

seq1  CCTGCTGTAGCATCCTTGTTGTGAGGATATAAAATGATACAACCTGTGTA  1049
      ||||||||||||| ||||||||||||| |||||||||||||  |||||||
seq2  CCTGCTGTAGCAT-CTTGTTGTGAGGA-ATAAAATGATACA--CTGTGTA  1037

seq1  ATAACAAGAAATGAGGGGACTACCAAAGTCAGTGCTGGGCTATAATATAA  1099
      ||||| |||||||  ||||||| | | ||||||||| |||||||||||||
seq2  ATAAC-AGAAATGGAGGGACTA-CTAGGTCAGTGCT-GGCTATAATATAA  1084

seq1  ATGTCACTCGAACTCAAGTACAGCAGAAAGGGACAGTGGATCTGTTAACT  1149
      |||||| |   |||||||| |||| |||||| |  | ||||||| |||||
seq2  ATGTCATT--GACTCAAGTCCAGC-GAAAGGAAGTG-GGATCTGGTAACT  1130

seq1  CAGATGGTTTCCAAGTAACCAATGATCAGATAAGACACACAGCATGAATA  1199
      |  |||  |||||                                     
seq2  CGAATG--TTCCAG------------------------------------  1142

seq1  CACTAGTACCATCTAAATTATGTTCCAG  1227
                                  
seq2  ----------------------------  1142