BAC Information

Click to search

BAC

Clone NameB6Ng01-143I16
Chromosome14 (Build37)
Map Location 31,841,580 - 31,982,472
singlet/doubletdoublet
Overlap genePbrm1, EG432834, Nt5dc2, Stab1
Upstream geneChdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3
Downstream geneNisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I16.bB6Ng01-143I16.g
ACCDH941451DH941452
length9461,170
definitionDH941451|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I16, 5' end.DH941452|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,981,527 - 31,982,472)(31,841,580 - 31,842,761)
sequence
gaattctttcctgctttgaatccatgaatcctgggtttgcctgagtggag
gtccctaaaagattaaaggaaccccccagactgtgctcggtggctctacc
cagtcactacagacttcagggccaagtgagggacgtcacagacacccacc
cacccaccacaagcatagaggactgaagtgcaatggaacctgggctgtgg
ctgcagagttaggggtgggctcaggaaggccatgaggctggtaggggaga
ccagtctgaggggctagcatggtgtttccacctctactggtgtctgacgg
aaagactgaggcagctcacctgggggccagccagcccaggggctgtccaa
caacctcctaggcaccagaaccccgaagcttctgaatgaaaaagccagct
tgacagatgcagggaaaattatttattggtgcttaaatttgctttagaat
ctcccctagaccccaggcaggtggctaatggtgggtctggacctctagac
tatggtgccagggagcagcgtcctgggccaggaagccctgaacagggccc
aggtcgtccatgtgggggtcactggccagcgtcttcccttccgcctgcag
gctgctgatacgcaggaggaaatcctgggtgggtttcctgtgggggtgag
ctgacggatagcttttaaagcggctgctcacccaccctgtcctgcctcct
tcctcatgcctgcctcttggagttcactcgctgcctgccgctgctgcaat
cactgtccccacactacttttgtctcagacagcagacctgcctgctatgg
cagagccccgaaccctccttctgctctgtgtcctggtcctctgcctgtca
gacttcagcttcatccgagggcagacgtgagtgggagccagggtcaagga
acagggagggacatgatagtttgtgtatggatgtgttggggtgggg
gaattcaagaccagcctggcctacatagtgagattcagaacagccaggat
tacctagttgcgaccctgtctcaaaaataataatcattgctatcattata
acctttaacccatttggtaaagtagtaactcaggaacccatatgaaaata
aaaaatgaataaattgaaagtatggcaagaatgggctttctgactgtatt
tccctgtttaaatgaaacagtagagaaacctagcaaacactgccatgatc
aaatgatcagaggtaaccttatcagattaataaaataagacagaaccatg
tgtaagctggtaaaattgtgagtattgccacatcatctctactacactct
gttctgtaaagaacagggctttattttcaaaggaagccagaagaagcatt
ccagttgagtaatgctttacaaaataactagcctgtaatcttcaaaaata
tatgaaaatcaaggaaagctgagtagttatttagaatgaaagaaactaag
aaaatacaatgaaagcaggatttctgtactcaatttttttcactgtgaag
gacaagattggaatagctggcagaatataaatagaataaacagataagat
ggtaccatagccaagtttgtctcctggttttgaatagtggtcccttgatt
gtatgaaatcagtactcatccgggcgtggtgggcgcacccctttagtccc
agcacttgggaggcagaggcaggcagatttctgagttcgaggccaggctg
gtctacagagtgagttccaggacagcacagagaaaccctgtctcaaaaaa
ggaaaaaaaagaaaacaaggtactcaaacatatgtcagcgctttactcag
ttgttttgggaaattagtttttaggatgttcttaacattaaagtacactt
tttactttactaaattttggtgcacacgtcattcaagttgtacatgtctg
gaggtcagaagaacaactttgaggagttgtttcggttctgagaatgggac
tcaggttatcaggctctcggggagcacttcttctcctggttagtatttgc
tgaattgctgatcaggttcttggactttatgacgaactttaagcgaatgt
acatatgaaatgacattagactctccaaggcattgaacgtcagtgaccag
cagctttgacgtattacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_31981527_31982472
seq2: B6Ng01-143I16.b_44_989 (reverse)

seq1  CCCCACCCCAACACATCCATACACAAACTATCATGGTCCCTCCCTGTTCC  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCACCCCAACACATCCATACACAAACTATCAT-GTCCCTCCCTGTTCC  49

seq1  CTGACCCTGGCTCCCACTCACCGTCTGCCCTCGGATGAAGCTGGAGTCTG  100
       ||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TTGACCCTGGCTCCCACTCA-CGTCTGCCCTCGGATGAAGCTGAAGTCTG  98

seq1  ACAGGCAGAGGACCAGGACACAGAGCAGAAGGAGGGTTCGGGGCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGAGGACCAGGACACAGAGCAGAAGGAGGGTTCGGGGCTCTGCC  148

seq1  ATAGCAGGCAGGTCTGCTGTCTGAGACAAAAGTAGTGTGGGGACAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGCAGGTCTGCTGTCTGAGACAAAAGTAGTGTGGGGACAGTGAT  198

seq1  TGCAGCAGCGGCAGGCAGCGAGTGAACTCCAAGAGGCAGGCATGAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGCGGCAGGCAGCGAGTGAACTCCAAGAGGCAGGCATGAGGAAG  248

seq1  GAGGCAGGACAGGGTGGGTGAGCAGCCGCTTTAAAAGCTATCCGTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGACAGGGTGGGTGAGCAGCCGCTTTAAAAGCTATCCGTCAGCT  298

seq1  CACCCCCACAGG-AACCCA-CCAGGATTTCCTCCTGCGTATCAGCAGCCT  348
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  CACCCCCACAGGAAACCCACCCAGGATTTCCTCCTGCGTATCAGCAGCCT  348

seq1  GCAGGCGGAAGGGAAGACGCTGGCCAGTGACCCCCACATGGACGACCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGAAGGGAAGACGCTGGCCAGTGACCCCCACATGGACGACCTGG  398

seq1  GCCCTGTTCAGGGCTTCCTGGCCCAGGACGCTGCTCCCTGGCACCATAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCAGGGCTTCCTGGCCCAGGACGCTGCTCCCTGGCACCATAGT  448

seq1  CTAGAGGTCCAGACCCACCATTAGCCACCTGCCTGGGGTCTAGGGGAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTCCAGACCCACCATTAGCCACCTGCCTGGGGTCTAGGGGAGAT  498

seq1  TCTAAAGCAAATTTAAGCACCAATAAATAATTTTCCCTGCATCTGTCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCAAATTTAAGCACCAATAAATAATTTTCCCTGCATCTGTCAAG  548

seq1  CTGGCTTTTTCATTCAGAAGCTTCGGGGTTCTGGTGCCTAGGAGGTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTTTCATTCAGAAGCTTCGGGGTTCTGGTGCCTAGGAGGTTGTT  598

seq1  GGACAGCCCCTGGGCTGGCTGGCCCCCAGGTGAGCTGCCTCAGTCTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCCCTGGGCTGGCTGGCCCCCAGGTGAGCTGCCTCAGTCTTTCC  648

seq1  GTCAGACACCAGTAGAGGTGGAAACACCATGCTAGCCCCTCAGACTGGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACACCAGTAGAGGTGGAAACACCATGCTAGCCCCTCAGACTGGTC  698

seq1  TCCCCTACCAGCCTCATGGCCTTCCTGAGCCCACCCCTAACTCTGCAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCAGCCTCATGGCCTTCCTGAGCCCACCCCTAACTCTGCAGCC  748

seq1  ACAGCCCAGGTTCCATTGCACTTCAGTCCTCTATGCTTGTGGTGGGTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGGTTCCATTGCACTTCAGTCCTCTATGCTTGTGGTGGGTGGG  798

seq1  TGGGTGTCTGTGACGTCCCTCACTTGGCCCTGAAGTCTGTAGTGACTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGTGACGTCCCTCACTTGGCCCTGAAGTCTGTAGTGACTGGG  848

seq1  TAGAGCCACCGAGCACAGTCTGGGGGGTTCCTTTAATCTTTTAGGGACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCACCGAGCACAGTCTGGGGGGTTCCTTTAATCTTTTAGGGACCT  898

seq1  CCACTCAGGCAAACCCAGGATTCATGGATTCAAAGCAGGAAAGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGGCAAACCCAGGATTCATGGATTCAAAGCAGGAAAGAATTC  946

seq1: chr14_31841580_31842761
seq2: B6Ng01-143I16.g_66_1235

seq1  GAATTCAAGACCAGCCTGGCCTACATAGTGAGATTCAGAACAGCCAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAGCCTGGCCTACATAGTGAGATTCAGAACAGCCAGGAT  50

seq1  TACCTAGTTGCGACCCTGTCTCAAAAATAATAATCATTGCTATCATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGTTGCGACCCTGTCTCAAAAATAATAATCATTGCTATCATTATA  100

seq1  ACCTTTAACCCATTTGGTAAAGTAGTAACTCAGGAACCCATATGAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACCCATTTGGTAAAGTAGTAACTCAGGAACCCATATGAAAATA  150

seq1  AAAAATGAATAAATTGAAAGTATGGCAAGAATGGGCTTTCTGACTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATAAATTGAAAGTATGGCAAGAATGGGCTTTCTGACTGTATT  200

seq1  TCCCTGTTTAAATGAAACAGTAGAGAAACCTAGCAAACACTGCCATGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTAAATGAAACAGTAGAGAAACCTAGCAAACACTGCCATGATC  250

seq1  AAATGATCAGAGGTAACCTTATCAGATTAATAAAATAAGACAGAACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCAGAGGTAACCTTATCAGATTAATAAAATAAGACAGAACCATG  300

seq1  TGTAAGCTGGTAAAATTGTGAGTATTGCCACATCATCTCTACTACACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTGGTAAAATTGTGAGTATTGCCACATCATCTCTACTACACTCT  350

seq1  GTTCTGTAAAGAACAGGGCTTTATTTTCAAAGGAAGCCAGAAGAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAAAGAACAGGGCTTTATTTTCAAAGGAAGCCAGAAGAAGCATT  400

seq1  CCAGTTGAGTAATGCTTTACAAAATAACTAGCCTGTAATCTTCAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGAGTAATGCTTTACAAAATAACTAGCCTGTAATCTTCAAAAATA  450

seq1  TATGAAAATCAAGGAAAGCTGAGTAGTTATTTAGAATGAAAGAAACTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATCAAGGAAAGCTGAGTAGTTATTTAGAATGAAAGAAACTAAG  500

seq1  AAAATACAATGAAAGCAGGATTTCTGTACTCAATTTTTTTCACTGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATGAAAGCAGGATTTCTGTACTCAATTTTTTTCACTGTGAAG  550

seq1  GACAAGATTGGAATAGCTGGCAGAATATAAATAGAATAAACAGATAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATTGGAATAGCTGGCAGAATATAAATAGAATAAACAGATAAGAT  600

seq1  GGTACCATAGCCAAGTTTGTCTCCTGGTTTTGAATAGTGGTCCCTTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATAGCCAAGTTTGTCTCCTGGTTTTGAATAGTGGTCCCTTGATT  650

seq1  GTATGAAATCAGTACTCATCCGGGCGTGGT-GGCGCACCCCTTTAGTCCC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATGAAATCAGTACTCATCCGGGCGTGGTGGGCGCACCCCTTTAGTCCC  700

seq1  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGGCTG  750

seq1  GTCTACAGAGTGAGTTCCAGGACAGCACAGAGAAACCCTGTCTCAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACAGCACAGAGAAACCCTGTCTCAAAAAA  800

seq1  GGAAAAAAAAGAAAAACAAGTACTCAAACATATGTCAGCGCTTAACTCAG  849
      |||||||||||||||  | |||||||||||||||||||||||| ||||||
seq2  GGAAAAAAAAGAAAACAAGGTACTCAAACATATGTCAGCGCTTTACTCAG  850

seq1  TTGTTTTGGAAAATAAGTTTTTTAGGATGTTCTTAACATTAAAAGTACAC  899
      ||||||||| |||| || |||||||||||||||||||||| |||||||||
seq2  TTGTTTTGGGAAATTAG-TTTTTAGGATGTTCTTAACATT-AAAGTACAC  898

seq1  TTTTTAACATTTACTAAATTTT-GTGCACACGTTCATTCAAG-TGTACAT  947
      ||||||   ||||||||||||| ||||||||| ||||||||| |||||||
seq2  TTTTTA--CTTTACTAAATTTTGGTGCACACG-TCATTCAAGTTGTACAT  945

seq1  GTCTGGAGGTCAG-AGAACAACTTGGAGGAGTTGTTTCGGTTCTGGAGAT  996
      ||||||||||||| |||||||||| ||||||||||||||||||||   ||
seq2  GTCTGGAGGTCAGAAGAACAACTTTGAGGAGTTGTTTCGGTTCTGAGAAT  995

seq1  TGGACTCAGGTTATCAGGCTC---GGGAGCACTTCCTTCT-CTGTTTAGT  1042
       ||||||||||||||||||||   |||||||||| ||||| ||| |||||
seq2  GGGACTCAGGTTATCAGGCTCTCGGGGAGCACTT-CTTCTCCTGGTTAGT  1044

seq1  ATTTTGCTGATTTGCTGATCACGTTCTTAGAACTTTTATGACAGACTTAA  1092
      | |||||||| |||||||||| |||||| ||   ||||||||  ||||  
seq2  A-TTTGCTGAATTGCTGATCAGGTTCTTGGA--CTTTATGACGAACTT-T  1090

seq1  AAGCAGATGTACATAATGGAAAATGACTATAGACTCTCCAAAGGCATTGA  1142
      ||||  |||||||| |||  |||||||  |||||||||| ||||||||||
seq2  AAGCGAATGTACAT-ATG--AAATGACATTAGACTCTCC-AAGGCATTGA  1136

seq1  ACCGTCAGTGACCAGGGCAGTCTTTGACTGTATTCACTTT  1182
      | ||||||||||||  |||| ||||||| ||||| |||||
seq2  A-CGTCAGTGACCA--GCAG-CTTTGAC-GTATT-ACTTT  1170