BAC Information

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BAC

Clone NameB6Ng01-143I21
Chromosome14 (Build37)
Map Location 38,328,782 - 38,329,494
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I21.bB6Ng01-143I21.g
ACCDH941461DH941462
length1,080884
definitionDH941461|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I21, 5' end.DH941462|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcggtttttattgttatatctccctttttatttctgatttttt
aattcagatactatctctgtgtcctcttgttagtcttgctaaaggtttat
ctatcttgatgattttctcaaaaaaccagctcctggcttggttgattctt
tgtatagttctttttttttcctgcttggctgatttcagccctgagtttga
ttatttcctgctatctacctctctggggtgtatttgcttccttttgttct
agagcttgcagaggtgctgtcaagctgccagtgtgtgctctctccagttt
ctttttggaggtactcagaggtatgagttttcctcttagcactgttttca
ttgtgtcccataagtttgggtatgttgtggcttcagtttcattaaactat
aaaaagtctttaatttcttcctttattttttccttcaccaagttatcatt
gagtagagtattgttcagcttccatatgtatgtgggctttctgtaattat
tattattattattattattattattattattattattatttgttattgaa
gaccagtgatctgataagatgcatgggatgatctgatagagtgcacggga
ttatttcaattttcttgtatcttttgaggcctattttgtgagcaattata
tggtcaattttagagaaggtaccatgaggtgttgagaagaaggtatattc
ttttgttttaggatgtaatgttctctctatatatatacctgttaaatcta
tttagttcataacttctgttatttttactgtgtttagtttctgtttttat
gatacgtccattgctgagagtgggggtgttgaaagtctcccactattatt
gtgtgaagtataatgcatcctttgagctttattaaagttaattttatgat
ttaatgtactcttgcaattgaagcatagaaatcagaatggagaagttcat
gttgtagattttttccttagatgagttatgatagttctttctaatctatt
attgaaaacttagggtggaaagacgaatttatttgatataaatgatctac
tcacactttgggtcctggaccctattgctg
gaattcttctgataagtttagattgtagatccacaccttatctaagttat
atgaccttatttacacataatactttgaaaatatagataggaatgaagat
aattacttctctaatctgacagcaaatatctgaaacagttgcttgaaata
caatctctgaccatttgaattagtttgacaagtgattggaaaacaaaaaa
aaacaaaaagcagagtaaatagccatgcccatgaaacagtgggagagata
tagaaaattaacaatttttaagtaaaataattattatttttatttcttta
aaggtttatttactattattttgtgagtatggatgactgatctcatgcat
gtctatgtaccatgtgcatgcatggtaccaaaagagaccagaagagaatg
ttaggtcttttgatattaaagttaaaggtggttgttagccataatgtggg
ttcagagaatcaaacccagatccgatgtaagaacagttagtactcctaac
tgctgtgccatttccccagccaaaagaaaaacaattctttccctctctct
cccctctctcttctttctcttcctctctctctctattcctatttttgtct
ctctctcctctctttctctgtctctctcttttctctctgctttgagccta
tgtgtgtgtgtgtgtgtgtgtgcacgtgtgcatgtgcatgtgtgtgtgtg
tttctgtgttgtgttttctgtgtgtatttgtgtgtctgtataaatataca
tgcatgtgggtacctggagaggacaaaagagggacaaagaggattcagat
ctatagtagctgaaattacaagtggttgtagacaccttgagtgttgctgg
aaactgaactcagttctctgaatgaacaataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38328782_38329494
seq2: B6Ng01-143I21.g_68_781 (reverse)

seq1  ACACAACACAGAAACACACACACACATGCACATGCACACGTGCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACACAGAAACACACACACACATGCACATGCACACGTGCACACACA  50

seq1  CACACACACACACATAGGCTCAAAGCAGAGAG-AAAGAGAGAGACAGAGA  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACACACACACACATAGGCTCAAAGCAGAGAGAAAAGAGAGAGACAGAGA  100

seq1  AAGAGAGGAGAGAGAGACAAAAATAGGAATAGAGAGAGAGAGGAAGAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAGAGAGAGACAAAAATAGGAATAGAGAGAGAGAGGAAGAGAA  150

seq1  AGAAGAGAGAGGGGAGAGAGAGGGAAAGAATTGTTTTTCTTTTGGCTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAGGGGAGAGAGAGGGAAAGAATTGTTTTTCTTTTGGCTGGG  200

seq1  GAAATGGCACAGCAGTTAGGAGTACTAACTGTTCTTACATCGGATCTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCACAGCAGTTAGGAGTACTAACTGTTCTTACATCGGATCTGGG  250

seq1  TTTGATTCTCTGAACCCACATTATGGCTAACAACCACCTTTAACTTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTCTGAACCCACATTATGGCTAACAACCACCTTTAACTTTAAT  300

seq1  ATCAAAAGACCTAACATTCTCTTCTGGTCTCTTTTGGTACCATGCATGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGACCTAACATTCTCTTCTGGTCTCTTTTGGTACCATGCATGCA  350

seq1  CATGGTACATAGACATGCATGAGATCAGTCATCCATACTCACAAAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACATAGACATGCATGAGATCAGTCATCCATACTCACAAAATAAT  400

seq1  AGTAAATAAACCTTTAAAGAAATAAAAATAATAATTATTTTACTTAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAACCTTTAAAGAAATAAAAATAATAATTATTTTACTTAAAAA  450

seq1  TTGTTAATTTTCTATATCTCTCCCACTGTTTCATGGGCATGGCTATTTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTTTCTATATCTCTCCCACTGTTTCATGGGCATGGCTATTTAC  500

seq1  TCTGCTTTTTGTTTTTTTTTGTTTTCCAATCACTTGTCAAACTAATTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTGTTTTTTTTTGTTTTCCAATCACTTGTCAAACTAATTCAA  550

seq1  ATGGTCAGAGATTGTATTTCAAGCAACTGTTTCAGATATTTGCTGTCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGAGATTGTATTTCAAGCAACTGTTTCAGATATTTGCTGTCAGA  600

seq1  TTAGAGAAGTAATTATCTTCATTCCTATCTATATTTTCAAAGTATTATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGTAATTATCTTCATTCCTATCTATATTTTCAAAGTATTATGT  650

seq1  GTAAATAAGGTCATATAACTTAGATAAGGTGTGGATCTACAATCTAAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAGGTCATATAACTTAGATAAGGTGTGGATCTACAATCTAAACT  700

seq1  TATCAGAAGAATTC  713
      ||||||||||||||
seq2  TATCAGAAGAATTC  714