BAC Information

Click to search

BAC

Clone NameB6Ng01-144A04
Chromosome14 (Build37)
Map Location 44,606,312 - 44,746,952
singlet/doubletdoublet
Overlap geneLOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik
Upstream geneLOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621
Downstream geneEG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A04.bB6Ng01-144A04.g
ACCDH941798DH941799
length1,136722
definitionDH941798|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A04, 5' end.DH941799|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,745,808 - 44,746,952)(44,606,312 - 44,607,033)
sequence
gaattcaccatcatcaaatcacaacatgagaagacaatgttggatatgga
aaaaatgacgcagtcaataagtgataccattgagaagtacaaggaattca
tagaagataaggattcctacaggtgagtcccagacacagctgagaccctg
cactaggcagggaatgcttgtgaccttctaagactttgaacaaaagtaag
agctctagttttatactatctgtttcttaataggagccctcccttgaaga
aagggtcttggatttgtacctcttggactcagttttcctaagtgtgaaga
ttttccaagaccatcagtctttattcttccaaattcaggatcctctctat
agaaacaatttccaccatgctgggaatctcaagcaatcctgatctctagg
cttctgacagcagagtaaaagatctgggatccatgacaaaaatcaaaaga
gtttataccttttgggtctcctctcctccctcagaggggatttgcactct
tcctactgatggttttctggtaccacagacatataagcaaccatgaggta
catttcctcctctctgatgtacgtgggacattcttagtgtcagggttttc
agaagtcctttgattcttgtggcatgtggctggtccctggatttgacctg
cctctattttggactgatgggtatactgtggtctctagtctggggctgtc
tggtgatcagggcccttgcagggatcatagtacttggaggagtggcaggt
aaatggaagcttgctgggaatcacctttgtttgtttgtttgtttgtttgt
ttgtttgtttgtttgtttgtggttcagcttcacacacacctacctcctga
aagaatgcaatcaattgaaggaaaaagtaaggatgttgctgaataagaac
agaaagctgctggtagagcaggccgacctggaagcatcctatggtgaaga
aaagaggttctgtgatgagtccagcaagaacatacattcctagtgctaag
cagtagcacataggatgatgtgtatcagagcaaatgccttcatggctaac
ataacatagacaatccattgtacagtccaccactttatcaggcactcact
gtttctcctcagggtttaatttagtgatcaactaca
gaattctaagcaatagagcacaactggactttgttgggagctagagcaga
atccataacagctcttaaaaagcagaaggagagcaagtgaagcaggggaa
attttagagcaaatcgtgttgaggggaatttcacagaaaaagaacatgcc
tatacacttaaaataaagtttaatgacaaagataggagaatttggacaga
aaaagttagaagaagcactcacaatgtgcactgtacacttaacacatatc
aaatgtctgcatgtgacagggatgtgtgttaatgagaaaggaaaagaaag
tttactgcagtgcaggaatgtcatttaaaaaactgcctttaaaaaaggtc
agtatgaaaaaagacaaacaaatgttgacctctgaattcaagcaacaaaa
tgtcttccctcagtgggtccagcaaggcttgaaaacagaagcagaaatca
gccttcagtactcagctttgaggacccacagcttgtcacaacactgagca
ccttgcagctggaattgaagaaaattgatagttagtagtctgaggtgggg
taggagataaggcccatgtgtttggagatagggctgtgactgcacctcct
gaactcataggcaactcaggacgaccatctaaaaaggggactgtgtgcct
gcttgatctcaacccagggcttggatgtttgaaccatctcttctcagagt
tgatggagggggtggagagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44745808_44746952
seq2: B6Ng01-144A04.b_48_1183 (reverse)

seq1  TGTAGTTGATCACCTAAATAAACACTTGGAGGAGAAACAGGTGAGTGCCT  50
      |||||||||||||  || ||||| ||  ||||||||||| ||||||||||
seq2  TGTAGTTGATCACTAAATTAAACCCT--GAGGAGAAACA-GTGAGTGCCT  47

seq1  GGATAAGTTGGTGGACTGTTACATTGGATTGTCTATGTTTATGGTTAGCC  100
       |||||  |||||||||| |||| ||||||||||||| |||| |||||||
seq2  -GATAAAGTGGTGGACTG-TACAATGGATTGTCTATG-TTAT-GTTAGCC  93

seq1  ATGAGGGCAATCTGCCTCTGATACACATCATCCTATGTGCTACTGCTTAG  150
      |||| ||| || || |||||||||||||||||||||||||||||||||||
seq2  ATGAAGGC-ATTTG-CTCTGATACACATCATCCTATGTGCTACTGCTTAG  141

seq1  CACTTGGGATGTATGTTCTTGCTGGACTCATCACAGAACCTCTTTTCTTC  200
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGAATGTATGTTCTTGCTGGACTCATCACAGAACCTCTTTTCTTC  191

seq1  ACCATAGGATGCTTCCAGGTCGGCCTGCTCTACCAGCAGCTTTCTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGATGCTTCCAGGTCGGCCTGCTCTACCAGCAGCTTTCTGTTCT  241

seq1  TATTCAGCAACATCCTTACTTTTTCCTTCAATTGATTGCATTCTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCAACATCCTTACTTTTTCCTTCAATTGATTGCATTCTTTCAGG  291

seq1  AGGTAGGTGTGTGTGAAGCTGAACCACAAACAAACAAACAAACAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTGTGTGTGAAGCTGAACCACAAACAAACAAACAAACAAACAAA  341

seq1  CAAACAAACAAACAAACAAAGGTGATTCCCAGCAAGCTTCCATTTACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAAGGTGATTCCCAGCAAGCTTCCATTTACCTG  391

seq1  CCACTCCTCCAAGTACTATGATCCCTGCAAGGGCCCTGATCACCAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTCCAAGTACTATGATCCCTGCAAGGGCCCTGATCACCAGACAG  441

seq1  CCCCAGACTAGAGACCACAGTATACCCATCAGTCCAAAATAGAGGCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACTAGAGACCACAGTATACCCATCAGTCCAAAATAGAGGCAGGT  491

seq1  CAAATCCAGGGACCAGCCACATGCCACAAGAATCAAAGGACTTCTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAGGGACCAGCCACATGCCACAAGAATCAAAGGACTTCTGAAAA  541

seq1  CCCTGACACTAAGAATGTCCCACGTACATCAGAGAGGAGGAAATGTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACTAAGAATGTCCCACGTACATCAGAGAGGAGGAAATGTACCT  591

seq1  CATGGTTGCTTATATGTCTGTGGTACCAGAAAACCATCAGTAGGAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGCTTATATGTCTGTGGTACCAGAAAACCATCAGTAGGAAGAGT  641

seq1  GCAAATCCCCTCTGAGGGAGGAGAGGAGACCCAAAAGGTATAAACTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCCCTCTGAGGGAGGAGAGGAGACCCAAAAGGTATAAACTCTTT  691

seq1  TGATTTTTGTCATGGATCCCAGATCTTTTACTCTGCTGTCAGAAGCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGTCATGGATCCCAGATCTTTTACTCTGCTGTCAGAAGCCTAG  741

seq1  AGATCAGGATTGCTTGAGATTCCCAGCATGGTGGAAATTGTTTCTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGATTGCTTGAGATTCCCAGCATGGTGGAAATTGTTTCTATAGA  791

seq1  GAGGATCCTGAATTTGGAAGAATAAAGACTGATGGTCTTGGAAAATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCTGAATTTGGAAGAATAAAGACTGATGGTCTTGGAAAATCTTC  841

seq1  ACACTTAGGAAAACTGAGTCCAAGAGGTACAAATCCAAGACCCTTTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGGAAAACTGAGTCCAAGAGGTACAAATCCAAGACCCTTTCTTC  891

seq1  AAGGGAGGGCTCCTATTAAGAAACAGATAGTATAAAACTAGAGCTCTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGGCTCCTATTAAGAAACAGATAGTATAAAACTAGAGCTCTTAC  941

seq1  TTTTGTTCAAAGTCTTAGAAGGTCACAAGCATTCCCTGCCTAGTGCAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCAAAGTCTTAGAAGGTCACAAGCATTCCCTGCCTAGTGCAGGG  991

seq1  TCTCAGCTGTGTCTGGGACTCACCTGTAGGAATCCTTATCTTCTATGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGTGTCTGGGACTCACCTGTAGGAATCCTTATCTTCTATGAAT  1041

seq1  TCCTTGTACTTCTCAATGGTATCACTTATTGACTGCGTCATTTTTTCCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTTCTCAATGGTATCACTTATTGACTGCGTCATTTTTTCCAT  1091

seq1  ATCCAACATTGTCTTCTCATGTTGTGATTTGATGATGGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATTGTCTTCTCATGTTGTGATTTGATGATGGTGAATTC  1136

seq1: chr14_44606312_44607033
seq2: B6Ng01-144A04.g_64_785

seq1  GAATTCTAAGCAATAGAGCACAACTGGACTTTGTTGGGAGCTAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCAATAGAGCACAACTGGACTTTGTTGGGAGCTAGAGCAGA  50

seq1  ATCCATAACAGCTCTTAAAAAGCAGAAGGAGAGCAAGTGAAGCAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAACAGCTCTTAAAAAGCAGAAGGAGAGCAAGTGAAGCAGGGGAA  100

seq1  ATTTTAGAGCAAATCGTGTTGAGGGGAATTTCACAGAAAAAGAACATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGCAAATCGTGTTGAGGGGAATTTCACAGAAAAAGAACATGCC  150

seq1  TATACACTTAAAATAAAGTTTAATGACAAAGATAGGAGAATTTGGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTAAAATAAAGTTTAATGACAAAGATAGGAGAATTTGGACAGA  200

seq1  AAAAGTTAGAAGAAGCACTCACAATGTGCACTGTACACTTAACACATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAGAAGAAGCACTCACAATGTGCACTGTACACTTAACACATATC  250

seq1  AAATGTCTGCATGTGACAGGGATGTGTGTTAATGAGAAAGGAAAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGCATGTGACAGGGATGTGTGTTAATGAGAAAGGAAAAGAAAG  300

seq1  TTTACTGCAGTGCAGGAATGTCATTTAAAAAACTGCCTTTAAAAAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCAGTGCAGGAATGTCATTTAAAAAACTGCCTTTAAAAAAGGTC  350

seq1  AGTATGAAAAAAGACAAACAAATGTTGACCTCTGAATTCAAGCAACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAAAAAGACAAACAAATGTTGACCTCTGAATTCAAGCAACAAAA  400

seq1  TGTCTTCCCTCAGTGGGTCCAGCAAGGCTTGAAAACAGAAGCAGAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCTCAGTGGGTCCAGCAAGGCTTGAAAACAGAAGCAGAAATCA  450

seq1  GCCTTCAGTACTCAGCTTTGAGGACCCACAGCTTGTCACAACACTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGTACTCAGCTTTGAGGACCCACAGCTTGTCACAACACTGAGCA  500

seq1  CCTTGCAGCTGGAATTGAAGAAAATTGATAGTTAGTAGTCTGAGGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGCTGGAATTGAAGAAAATTGATAGTTAGTAGTCTGAGGTGGGG  550

seq1  TAGGAGATAAGGCCCATGTGTTTGGAGATAGGGCTGTGACTGCACCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATAAGGCCCATGTGTTTGGAGATAGGGCTGTGACTGCACCTCCT  600

seq1  GAACTCATAGGCAACTCAGGACGACCATCTAAAAAGGGGACTGTGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATAGGCAACTCAGGACGACCATCTAAAAAGGGGACTGTGTGCCT  650

seq1  GCTTGATCTCAACCCAGGGCTTGGATGTTTGAACCATCTCTTCTCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCTCAACCCAGGGCTTGGATGTTTGAACCATCTCTTCTCAGAGT  700

seq1  TGATGGAGGGGGTGGAGAGGGT  722
      ||||||||||||||||||||||
seq2  TGATGGAGGGGGTGGAGAGGGT  722