BAC Information

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BAC

Clone NameB6Ng01-144J22
Chromosome14 (Build37)
Map Location 56,561,866 - 56,703,089
singlet/doubletdoublet
Overlap geneCma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8
Upstream geneMyh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik
Downstream geneCtsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J22.bB6Ng01-144J22.g
ACCDH942252DH942253
length1,1561,099
definitionDH942252|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J22, 5' end.DH942253|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,701,912 - 56,703,089)(56,561,866 - 56,562,983)
sequence
gaattcttccttaatgtgtccatgagatttaatttgattcaaggaaaagt
cttggcaccatcatgactacaagaagaaattgaaaactagaggaaagtga
tgccaggcagcaggctttgtgtgatctctcgcagcacccagacacccttt
cttgttgcgtgacagcccctacaaaagaatctgttctctttacacatcag
gtccacagactctccaagcatgaagtgtcccttaccagcctccagataac
tgttgcacagtttccatgagcacaaagattcagaataatctctctttttc
aggggaaatcatatggggtacagagtccaaaccccactcccggccctata
tggcatacataaggtttaatgacagcaaatcagtctatcgctgtggtggt
ttcctggtggcaagagacatcgtaatgacagcagctcactgtaatggaaa
gtaaggagaagcaactgggtctttgatgcctgggactaaccaaataacaa
cagatcctggctgtccctaaacgtgtagagccaaaggtgaagatcaacct
gactatatcctatttgacctaaagtggttgtgaaactcaggaccagatag
tgtcagtgaagggtctgaatggctgggtggttattgaagacctaaggaac
aactccctcataaatctcttgctatttgactcagtcaagctctaccctca
acttgcctttcagggactgctttcattgctcctgttgttgtacttaactc
atcttcttttcacagagttataaatgtaaccttaggaattcacaatctca
agaaaaagaaaaacacccagctcattcctgtcagtgaagccatacctcac
gagagctttgacaatgaaacactggtcaatgacatcatgctcctgaaggt
accattttactgatcactggttttcgcccatagatcactggtgtatcagt
cccatcttctcttctaggtggctgacctattggtccaagggcatagatga
gctagagtgggaccagggggtgggggacaggggtagagatacagcagcct
catccctggttagcttgctgaagtgcagctgacctcgtattcttcatctt
tctgacagctgaccaagctcactcacagtgtgtgatcatatgcctccaaa
gacaag
gaattcttccctgggtcaggggcctcttccaatccccactttctgggctc
cttgtggtgttgacaggctcagtgtttaatcgggagagcaatgtggaaat
acctgcacttgggcctgagtcaggagagaaaaggcttggagaaagggtat
tttctggagcagacacacttcccagagctggctccccaggaattgctggg
gaatgagcaagaaatggaggccctgggggtagggttaatcctccccaatt
tggagaatttgaagggggtccattttctacaacaaaaactagtcaggagt
tcaggaaatagaaagggtcctgtgggcttgttcctccttccttaaaaatg
ttgggctgtggaccttggaactgatggccggtgttcttgaaaatagcaag
gagagacccccagaaaactactgggtagatcccgacaagtgagctgtggg
catcttccaggtttaaggggacatggaggggccatattggagaatcctct
ctctcctctgaggggagctgcatttatagtgattgaggctcatggcatct
atttaatgacatttgtcagttgacctaggctcaggatccctctcaggtcc
acttgcatgtgtcccaggttgctatcccgtggtttacttcgtattaagga
taagcagcgccttgtctcaccttcccgcacagtgagctgcagtcagcaca
aagtttcttcttatcaggaagccactgcaggccgacaggtagttctcaga
agtgacaatttccagataggccatgtaggggcgggagtgtggtatgcact
ccgtgcctccaatgatctctcctagaacacagaaccccacgacctgagat
aggcatgggtgctctctttctcgtacacagtcggggaaaggttgagagcg
gcttcccttggcttctgccctaactctgcatacttctctcaagcatctct
gtcagctcctctcacccacagcccgcctctgcacaaagtcacttctttct
caggatccatcctgctagacttagcgtctctactctgaaatttacacttc
tgctgggtcctagcatcttccttcctgcagacatgctgtcaggtcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56701912_56703089
seq2: B6Ng01-144J22.b_47_1202 (reverse)

seq1  CTTGCTCTTTGGAAGGGCAATAGTATCCACAGCACTGTTGAGTTGAGCTT  50
      |||| ||||||||  ||| |||  || |||| ||||| |||| |||||||
seq2  CTTG-TCTTTGGA--GGC-ATATGAT-CACA-CACTG-TGAG-TGAGCTT  42

seq1  TGCGTTCCAGCTGGTCAGAAAGATGAAGAATACGAGTTCAGGCCTGGCAC  100
       |     ||||| ||||||||||||||||||||||| ||||  || ||||
seq2  GG----TCAGCT-GTCAGAAAGATGAAGAATACGAGGTCAG--CT-GCAC  84

seq1  TCTCAGCAAGCTTAAACCAGGGATGAGGCTGCCTGTATCTCTACCCCTGT  150
      | ||||||||||  ||||||||||||||||| ||||||||||||||||||
seq2  T-TCAGCAAGCT--AACCAGGGATGAGGCTG-CTGTATCTCTACCCCTGT  130

seq1  CCCCCA-CCCCTGGTCCCACTCTAGCCTCATTCTATTGCCCTGGGACCAA  199
      |||||| |||||||||||||||||| |||| |||| |||||| |||||||
seq2  CCCCCACCCCCTGGTCCCACTCTAG-CTCA-TCTA-TGCCCTTGGACCAA  177

seq1  TAGGTCAGCCACCTAGAAGAGAAGATGGGACTGATACACCAGTGATCTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGCCACCTAGAAGAGAAGATGGGACTGATACACCAGTGATCTAT  227

seq1  GGGCGAAAACCAGTGATCAGTAAAATGGTACCTTCAGGAGCATGATGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAAAACCAGTGATCAGTAAAATGGTACCTTCAGGAGCATGATGTCA  277

seq1  TTGACCAGTGTTTCATTGTCAAAGCTCTCGTGAGGTATGGCTTCACTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGTGTTTCATTGTCAAAGCTCTCGTGAGGTATGGCTTCACTGAC  327

seq1  AGGAATGAGCTGGGTGTTTTTCTTTTTCTTGAGATTGTGAATTCCTAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGCTGGGTGTTTTTCTTTTTCTTGAGATTGTGAATTCCTAAGG  377

seq1  TTACATTTATAACTCTGTGAAAAGAAGATGAGTTAAGTACAACAACAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTATAACTCTGTGAAAAGAAGATGAGTTAAGTACAACAACAGGA  427

seq1  GCAATGAAAGCAGTCCCTGAAAGGCAAGTTGAGGGTAGAGCTTGACTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAAGCAGTCCCTGAAAGGCAAGTTGAGGGTAGAGCTTGACTGAG  477

seq1  TCAAATAGCAAGAGATTTATGAGGGAGTTGTTCCTTAGGTCTTCAATAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCAAGAGATTTATGAGGGAGTTGTTCCTTAGGTCTTCAATAAC  527

seq1  CACCCAGCCATTCAGACCCTTCACTGACACTATCTGGTCCTGAGTTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCATTCAGACCCTTCACTGACACTATCTGGTCCTGAGTTTCAC  577

seq1  AACCACTTTAGGTCAAATAGGATATAGTCAGGTTGATCTTCACCTTTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTTAGGTCAAATAGGATATAGTCAGGTTGATCTTCACCTTTGGC  627

seq1  TCTACACGTTTAGGGACAGCCAGGATCTGTTGTTATTTGGTTAGTCCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACGTTTAGGGACAGCCAGGATCTGTTGTTATTTGGTTAGTCCCAG  677

seq1  GCATCAAAGACCCAGTTGCTTCTCCTTACTTTCCATTACAGTGAGCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGACCCAGTTGCTTCTCCTTACTTTCCATTACAGTGAGCTGCT  727

seq1  GTCATTACGATGTCTCTTGCCACCAGGAAACCACCACAGCGATAGACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTACGATGTCTCTTGCCACCAGGAAACCACCACAGCGATAGACTGA  777

seq1  TTTGCTGTCATTAAACCTTATGTATGCCATATAGGGCCGGGAGTGGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCATTAAACCTTATGTATGCCATATAGGGCCGGGAGTGGGGTT  827

seq1  TGGACTCTGTACCCCATATGATTTCCCCTGAAAAAGAGAGATTATTCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGTACCCCATATGATTTCCCCTGAAAAAGAGAGATTATTCTGA  877

seq1  ATCTTTGTGCTCATGGAAACTGTGCAACAGTTATCTGGAGGCTGGTAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGCTCATGGAAACTGTGCAACAGTTATCTGGAGGCTGGTAAGG  927

seq1  GACACTTCATGCTTGGAGAGTCTGTGGACCTGATGTGTAAAGAGAACAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCATGCTTGGAGAGTCTGTGGACCTGATGTGTAAAGAGAACAGA  977

seq1  TTCTTTTGTAGGGGCTGTCACGCAACAAGAAAGGGTGTCTGGGTGCTGCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTAGGGGCTGTCACGCAACAAGAAAGGGTGTCTGGGTGCTGCG  1027

seq1  AGAGATCACACAAAGCCTGCTGCCTGGCATCACTTTCCTCTAGTTTTCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCACACAAAGCCTGCTGCCTGGCATCACTTTCCTCTAGTTTTCAA  1077

seq1  TTTCTTCTTGTAGTCATGATGGTGCCAAGACTTTTCCTTGAATCAAATTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTGTAGTCATGATGGTGCCAAGACTTTTCCTTGAATCAAATTA  1127

seq1  AATCTCATGGACACATTAAGGAAGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  AATCTCATGGACACATTAAGGAAGAATTC  1156

seq1: chr14_56561866_56562983
seq2: B6Ng01-144J22.g_67_1165

seq1  GAATTCTTCCCTGGGTCAGGGGCCTCTTCCAATCCCCACTTTCTGGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTGGGTCAGGGGCCTCTTCCAATCCCCACTTTCTGGGCTC  50

seq1  CTTGTGGTGTTGACAGGCTCAGTGTTTAATCGGGAGAGCAATGTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTGTTGACAGGCTCAGTGTTTAATCGGGAGAGCAATGTGGAAAT  100

seq1  ACCTGCACTTGGGCCTGAGTCAGGAGAGAAAAGGCTTGGAGAAAGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTTGGGCCTGAGTCAGGAGAGAAAAGGCTTGGAGAAAGGGTAT  150

seq1  TTTCTGGAGCAGACACACTTCCCAGAGCTGGCTCCCCAGGAATTGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGCAGACACACTTCCCAGAGCTGGCTCCCCAGGAATTGCTGGG  200

seq1  GAATGAGCAAGAAATGGAGGCCCTGGGGGTAGGGTTAATCCTCCCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCAAGAAATGGAGGCCCTGGGGGTAGGGTTAATCCTCCCCAATT  250

seq1  TGGAGAATTTGAAGGGGGTCCATTTTCTACAACAAAAACTAGTCAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTTGAAGGGGGTCCATTTTCTACAACAAAAACTAGTCAGGAGT  300

seq1  TCAGGAAATAGAAAGGGTCCTGTGGGCTTGTTCCTCCTTCCTTAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATAGAAAGGGTCCTGTGGGCTTGTTCCTCCTTCCTTAAAAATG  350

seq1  TTGGGCTGTGGACCTTGGAACTGATGGCCGGTGTTCTTGAAAATAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTGGACCTTGGAACTGATGGCCGGTGTTCTTGAAAATAGCAAG  400

seq1  GAGAGACCCCCAGAAAACTACTGGGTAGATCCCGACAAGTGAGCTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCCCAGAAAACTACTGGGTAGATCCCGACAAGTGAGCTGTGGG  450

seq1  CATCTTCCAGGTTTAAGGGGACATGGAGGGGCCATATTGGAGAATCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCAGGTTTAAGGGGACATGGAGGGGCCATATTGGAGAATCCTCT  500

seq1  CTCTCCTCTGAGGGGAGCTGCATTTATAGTGATTGAGGCTCATGGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGAGGGGAGCTGCATTTATAGTGATTGAGGCTCATGGCATCT  550

seq1  ATTTAATGACATTTGTCAGTTGACCTAGGCTCAGGATCCCTCTCAGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGACATTTGTCAGTTGACCTAGGCTCAGGATCCCTCTCAGGTCC  600

seq1  ACTTGCATGTGTCCCAGGTTGCTATCCCGTGGTTTACTTCGTATTAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGTGTCCCAGGTTGCTATCCCGTGGTTTACTTCGTATTAAGGA  650

seq1  TAAGCAGCGCCTTGTCTCACCTTCCCGCACAGTGAGCTGCAGTCAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCGCCTTGTCTCACCTTCCCGCACAGTGAGCTGCAGTCAGCACA  700

seq1  AAGTTTCTTCTTATCAGGAAGCCACTGCAGGCCGACAGGTAGTTCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTCTTATCAGGAAGCCACTGCAGGCCGACAGGTAGTTCTCAGA  750

seq1  AGTGACAATTTCCAGATAGGCCATGTAGGGGCGGGAGTGTGGTATGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAATTTCCAGATAGGCCATGTAGGGGCGGGAGTGTGGTATGCACT  800

seq1  CCGTGCCTCCAATGATCTCTCCTAGAACACAGAACCCCACGACCTGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCTCCAATGATCTCTCCTAGAACACAGAACCCCACGACCTGAGAT  850

seq1  AGGCATGGGTGCTCTCTTTCTCGTACACAGTCGGGGAAAGGTTGAGAGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGGTGCTCTCTTTCTCGTACACAGTCGGGGAAAGGTTGAGAGCG  900

seq1  GCTTCCCTTGGCTTCTTGCCCTAAACTCTGCCATACTTCTCTCAGGCATC  950
      ||||||||||||||| |||||| ||||||| ||||||||||||| |||||
seq2  GCTTCCCTTGGCTTC-TGCCCT-AACTCTG-CATACTTCTCTCAAGCATC  947

seq1  TCTGTCAGCTCCTCTCACCCACAGCCCGCCCTCTGCCACAAAGTCACTTC  1000
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TCTGTCAGCTCCTCTCACCCACAGCCCG-CCTCTG-CACAAAGTCACTTC  995

seq1  TTTCTCAAGGATCCAATCCTGCCTTAGACTTAGGCAGTCTCCTACTTCTG  1050
      |||||| ||||||| |||||||  |||||||||   |||| |||| ||||
seq2  TTTCTC-AGGATCC-ATCCTGC--TAGACTTAG--CGTCT-CTAC-TCTG  1037

seq1  ATATTTTACAC-TCTGCTGTGTCCCTAGCCCATCTTCCTTCCTGCAGCAC  1099
      | | ||||||| ||||||| || |||||  ||||||||||||||||| ||
seq2  A-AATTTACACTTCTGCTGGGT-CCTAG--CATCTTCCTTCCTGCAG-AC  1082

seq1  ATGCTGTCCAGGTTCCTCT  1118
      ||||||| |||| ||||||
seq2  ATGCTGT-CAGG-TCCTCT  1099