BAC Information

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BAC

Clone NameB6Ng01-145A18
Chromosome14 (Build37)
Map Location 93,665,838 - 93,741,902
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A18.bB6Ng01-145A18.g
ACCDH942560DH942561
length1,1391,114
definitionDH942560|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A18, 5' end.DH942561|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,665,838 - 93,666,989)(93,740,758 - 93,741,902)
sequence
gaattcatggagggaggaagagagaaaaggacattgattgactctgggtt
tattaacctagaaatctatatcatattctactagtccaaagtggttagtt
atattgcctccagacttcagagttgagaaatacaggaaagcaaatacaat
gttcttggtggaaattaaactcaacactgagatgtacaacaactctagtg
tagtaagttgcactgtaatataatgcccagtagacacatatacaattcct
gtgacaggtgtttcaccacaacaatctaatgatgaacatttaaagcaaaa
atcaaaatcttaaatctatattttacagagtttcatttagacatacagtg
tggccattattcaagctgtagtctgagggaggagattcaggaggggtttt
atgttgttcctttaagagaaacagtccaggtaggaatggaggtatcccaa
atagtatacctgtactagattttgtctgttagactactgaagcaatgggc
tccaacattgaaatttcatcaggaaattcatactggaaaaagaaaaacac
taggaaacaggtgccagctagacaggggtcttgccaacttgaaaaatatt
tgtaatttaaatgattaacaagtaaccagccagtgttgttggttgggact
ctgtctgtatgaactccaaatttttcatgtcaggatcctaaagatgggct
gggggtgggtctttgaagctctttcttcccctgacgaatgtgtccaaatt
taataaatctgcctgataagtattttattattgttttttttttcaattgt
cttattaaagacaggtggctacacaggaccgggaagaactgcacaggcaa
gaccctcacctaacaactttaaaaccaaaggaaggcattgttccatctgt
aacaaaagggcagccatgaactaggcagaagagagcccgtggagctaagt
atgtggcagagacctagattgcagctgcatttctttatttaatcaatgct
taagagctttctcttggtcacaaagataaagagttatcagaaggtatggt
ggttgtgagggcttagcacctgttttaacagattacagtcgatttatttt
gctttacaattacaagagccatcatacgattatggatga
gaattctaaaatggattgcctggtagtccaggcaaacaaccataattcaa
ttgcacacagggttttgcttgaggaagctcatagctgatgcactcttgat
tttgttcttgctctgacttgctcttgagcccgaaaagctagctctgcttt
gtcttattctttaaatattcaaatgttcttgtttctctgagttcagaaaa
aaaaaaaaagcagcagcaagctcttggaaatctctcagcaaatggtcaaa
tctgccatttattggactccttctgattcaagagctttcaacagtgtaca
taatgatcatcaaaagttagactggcaatttaatatatatttctttactt
cttgtactaataaactgtgaatgaatttttctaaaagtagtcattcttcg
aagatctattcaaagagaatgctagagggaaatgaaaatccccccagaaa
gttctggaagactgtacacaccattaaatgaatgaaaaagaacatttcta
gcaatgacttctgtggtacaagactgacattacggcagttattaaaagga
ggaaacattcattagctttcagaggaaatctgtagaattcatatattttt
tttggagagtacaaagcacctgaccaaatttgtttttcaaagagtatccc
taatgcaaggaacagggagcatttctaattataatgtaatttcagactcc
tctgattgtcttttaactctactgaatatggaaatttgaagtcttctcct
ttaattaactaagttcgctaactttgggatggactggcttctcactgcta
agctttactagcactgtgtgagagtagtcggtcagtgggaccctcaccac
tgcgctttgtgcacctctggctttgttaaatgacaggccccagcattgaa
acagcctgctgataagcacttcgcgttgattttactgctttctcttttct
ttccctttaaaaccttcatttgtttgcacatgctgcattttggcacacct
gctttctcctagacagtgtagtctctctgatcaatgcgagcagcttgcac
gatgctgataaaagtagcagaccttgagtgcaatactcagcccaagcact
cagcattacccggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93665838_93666989
seq2: B6Ng01-145A18.b_48_1186

seq1  GAATTCATGGAGGGAGGAAGAGAGAAAAGGACATTGATTGACTCTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAGGGAGGAAGAGAGAAAAGGACATTGATTGACTCTGGGTT  50

seq1  TATTAACCTAGAAATCTATATCATATTCTACTAGTCCAAAGTGGTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCTAGAAATCTATATCATATTCTACTAGTCCAAAGTGGTTAGTT  100

seq1  ATATTGCCTCCAGACTTCAGAGTTGAGAAATACAGGAAAGCAAATACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCCTCCAGACTTCAGAGTTGAGAAATACAGGAAAGCAAATACAAT  150

seq1  GTTCTTGGTGGAAATTAAACTCAACACTGAGATGTACAACAACTCTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGTGGAAATTAAACTCAACACTGAGATGTACAACAACTCTAGTG  200

seq1  TAGTAAGTTGCACTGTAATATAATGCCCAGTAGACACATATACAATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTGCACTGTAATATAATGCCCAGTAGACACATATACAATTCCT  250

seq1  GTGACAGGTGTTTCACCACAACAATCTAATGATGAACATTTAAAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGTGTTTCACCACAACAATCTAATGATGAACATTTAAAGCAAAA  300

seq1  ATCAAAATCTTAAATCTATATTTTACAGAGTTTCATTTAGACATACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTTAAATCTATATTTTACAGAGTTTCATTTAGACATACAGTG  350

seq1  TGGCCATTATTCAAGCTGTAGTCTGAGGGAGGAGATTCAGGAGGGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTATTCAAGCTGTAGTCTGAGGGAGGAGATTCAGGAGGGGTTTT  400

seq1  ATGTTGTTCCTTTAAGAGAAACAGTCCAGGTAGGAATGGAGGTATCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTCCTTTAAGAGAAACAGTCCAGGTAGGAATGGAGGTATCCCAA  450

seq1  ATAGTATACCTGTACTAGATTTTGTCTGTTAGACTACTGAAGCAATGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATACCTGTACTAGATTTTGTCTGTTAGACTACTGAAGCAATGGGC  500

seq1  TCCAACATTGAAATTTCATCAGGAAATTCATACTGGAAAAAGAAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATTGAAATTTCATCAGGAAATTCATACTGGAAAAAGAAAAACAC  550

seq1  TAGGAAACAGGTGCCAGCTAGACAGGGGTCTTGCCAACTTGAAAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACAGGTGCCAGCTAGACAGGGGTCTTGCCAACTTGAAAAATATT  600

seq1  TGTAATTTAAATGATTAACAAGTAACCAGCCAGTGTTGTTGGTTGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTAAATGATTAACAAGTAACCAGCCAGTGTTGTTGGTTGGGACT  650

seq1  CTGTCTGTATGAACTCCAAATTTTTCATGTCAGGATCCTAAAGATGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTATGAACTCCAAATTTTTCATGTCAGGATCCTAAAGATGGGCT  700

seq1  GGGGGTGGGTCTTTGAAGCTCTTTCTTCCCCTGACGAATGTGTCCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGTCTTTGAAGCTCTTTCTTCCCCTGACGAATGTGTCCAAATT  750

seq1  TAATAAATCTGCCTGATAAGTATTTTATTATTGTTTTTTTTTTCAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCTGCCTGATAAGTATTTTATTATTGTTTTTTTTTTCAATTGT  800

seq1  CTTATTAAAGACAGGTGGCTACACAGGACCGGGAAGAACTGCACAGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAGACAGGTGGCTACACAGGACCGGGAAGAACTGCACAGGCAA  850

seq1  GACCCTCACCTAACAACTTTAAAACCAAAGGAAGGCATTGTTCCATCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCACCTAACAACTTTAAAACCAAAGGAAGGCATTGTTCCATCTGT  900

seq1  AACAAAAAGGGCAGCCATGAACTAGGCAGAAGAGAGCCCGTGGAGCTAAG  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AAAAGGGCAGCCATGAACTAGGCAGAAGAGAGCCCGTGGAGCTAAG  949

seq1  TATGTGGCAAGAAGACCTAGATTGGCAGCTGCATTTCTTTATTTAAAATC  1000
      |||||||||   ||||||||||| ||||||||||||||||||||  ||||
seq2  TATGTGGCA--GAGACCTAGATT-GCAGCTGCATTTCTTTATTT--AATC  994

seq1  AATGCTTAAGAGCTTTCTCTTGGTCACAAAGATAAAGGAGTTATCAGAGG  1050
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AATGCTTAAGAGCTTTCTCTTGGTCACAAAGATAAA-GAGTTATCAGAAG  1043

seq1  TAATGGTGGTTGTGAGTGCTTAGCA-CTGTTTTAACAGATTACAGGTCGA  1099
        |||||||||||||| |||||||| |||||||||||||||||| |||||
seq2  GTATGGTGGTTGTGAGGGCTTAGCACCTGTTTTAACAGATTACA-GTCGA  1092

seq1  TTTTAATTTTGCTTTACAAATTACAAAGAGCCCATCAATACGATTATGGA  1149
      |||  |||||||||||| |||||| ||||| ||||| |||||||||||||
seq2  TTT--ATTTTGCTTTAC-AATTAC-AAGAG-CCATC-ATACGATTATGGA  1136

seq1  TGA  1152
      |||
seq2  TGA  1139

seq1: chr14_93740758_93741902
seq2: B6Ng01-145A18.g_68_1181 (reverse)

seq1  ACCGGGTTTAATGCCTGAGTGCTATAGAGCTGAAGTAATTGCACTCAAGG  50
      ||||||  ||||| ||||||||  | | |||| ||| |||||||||||||
seq2  ACCGGG--TAATG-CTGAGTGC--TTGGGCTG-AGT-ATTGCACTCAAGG  43

seq1  TCTGCTAACTTTTTAATCAGGCATTTGGTTGCAAGCTGCTCGCAATTGAT  100
      |||||| ||||||  |||| ||||     |||||||||||||| ||||| 
seq2  TCTGCT-ACTTTT--ATCA-GCAT---CGTGCAAGCTGCTCGC-ATTGA-  84

seq1  TCAGAGAGAACTAACACTGTCTAAGGAAGAAAGCAGGTGTGCCAAAAATG  150
      |||||||| ||| ||||||||||  | |||||||||||||||| ||||||
seq2  TCAGAGAG-ACT-ACACTGTCTA--GGAGAAAGCAGGTGTGCC-AAAATG  129

seq1  CAGGCATGTTGGCAAAACAAATGAAAGGTTTTTAAAGGGAAAGGAAAAGA  200
      || ||||||  || |||||||||||  | ||||||||||||| |||||| 
seq2  CA-GCATGT--GC-AAACAAATGAA--GGTTTTAAAGGGAAA-GAAAAG-  171

seq1  AGAAAGCAGTAAAAATCAACGCGAAGTGCTTATCAGCAGGCTGTTTCAAT  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGT-AAAATCAACGCGAAGTGCTTATCAGCAGGCTGTTTCAAT  220

seq1  GCTGGGGCCTGTCATTTAACAAAGCCAGAGGTGCACAAAAGCGCAGTGGT  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTGGGGCCTGTCATTTAACAAAGCCAGAGGTGCAC-AAAGCGCAGTGGT  269

seq1  GAGGGTCCCACTGACCGACTACTCTCACACAGTGCTAGTAAAGCTTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCCACTGACCGACTACTCTCACACAGTGCTAGTAAAGCTTAGCA  319

seq1  GTGAGAAGCCAGTCCATCCCAAAGTTAGCGAACTTAGTTAATTAAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGCCAGTCCATCCCAAAGTTAGCGAACTTAGTTAATTAAAGGAG  369

seq1  AAGACTTCAAATTTCCATATTCAGTAGAGTTAAAAGACAATCAGAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCAAATTTCCATATTCAGTAGAGTTAAAAGACAATCAGAGGAGT  419

seq1  CTGAAATTACATTATAATTAGAAATGCTCCCTGTTCCTTGCATTAGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTACATTATAATTAGAAATGCTCCCTGTTCCTTGCATTAGGGAT  469

seq1  ACTCTTTGAAAAACAAATTTGGTCAGGTGCTTTGTACTCTCCAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGAAAAACAAATTTGGTCAGGTGCTTTGTACTCTCCAAAAAAAA  519

seq1  TATATGAATTCTACAGATTTCCTCTGAAAGCTAATGAATGTTTCCTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATTCTACAGATTTCCTCTGAAAGCTAATGAATGTTTCCTCCTT  569

seq1  TTAATAACTGCCGTAATGTCAGTCTTGTACCACAGAAGTCATTGCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACTGCCGTAATGTCAGTCTTGTACCACAGAAGTCATTGCTAGAA  619

seq1  ATGTTCTTTTTCATTCATTTAATGGTGTGTACAGTCTTCCAGAACTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTTTCATTCATTTAATGGTGTGTACAGTCTTCCAGAACTTTCT  669

seq1  GGGGGGATTTTCATTTCCCTCTAGCATTCTCTTTGAATAGATCTTCGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATTTTCATTTCCCTCTAGCATTCTCTTTGAATAGATCTTCGAAG  719

seq1  AATGACTACTTTTAGAAAAATTCATTCACAGTTTATTAGTACAAGAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTACTTTTAGAAAAATTCATTCACAGTTTATTAGTACAAGAAGTA  769

seq1  AAGAAATATATATTAAATTGCCAGTCTAACTTTTGATGATCATTATGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATATATTAAATTGCCAGTCTAACTTTTGATGATCATTATGTAC  819

seq1  ACTGTTGAAAGCTCTTGAATCAGAAGGAGTCCAATAAATGGCAGATTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAAAGCTCTTGAATCAGAAGGAGTCCAATAAATGGCAGATTTGA  869

seq1  CCATTTGCTGAGAGATTTCCAAGAGCTTGCTGCTGCTTTTTTTTTTTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCTGAGAGATTTCCAAGAGCTTGCTGCTGCTTTTTTTTTTTTTC  919

seq1  TGAACTCAGAGAAACAAGAACATTTGAATATTTAAAGAATAAGACAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAGAAACAAGAACATTTGAATATTTAAAGAATAAGACAAAGC  969

seq1  AGAGCTAGCTTTTCGGGCTCAAGAGCAAGTCAGAGCAAGAACAAAATCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGCTTTTCGGGCTCAAGAGCAAGTCAGAGCAAGAACAAAATCAA  1019

seq1  GAGTGCATCAGCTATGAGCTTCCTCAAGCAAAACCCTGTGTGCAATTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATCAGCTATGAGCTTCCTCAAGCAAAACCCTGTGTGCAATTGAA  1069

seq1  TTATGGTTGTTTGCCTGGACTACCAGGCAATCCATTTTAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTGTTTGCCTGGACTACCAGGCAATCCATTTTAGAATTC  1114