BAC Information

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BAC

Clone NameB6Ng01-146A01
Chromosome14 (Build37)
Map Location 53,595,897 - 53,730,548
singlet/doubletdoublet
Overlap geneLOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
Downstream geneEG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A01.bB6Ng01-146A01.g
ACCDH943256DH943257
length1,053784
definitionDH943256|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A01, 5' end.DH943257|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,595,897 - 53,596,950)(53,730,007 - 53,730,548)
sequence
gaattctctgtttagctctggacttctctctcttctcttttttatacttt
gttgctttagtttatttctgagaatgtagtttaattacatcattccttcc
tccgctgcttcccacaaaccctctcatgagcccctccctattctcctttc
aacccatggcctgttgtcattaattgttattgcagaactatatttcttga
tgagttaaggcaattctttttcatgatagtgtactttagctctagcctac
atgattaatatgcagtattttcattgctgctcagctctaaatgtttcttt
tttttaattaggtattttcttcatttacatttcaaatgctatcccaaaag
tcctcagaccctcccccctccactcccctacccacccactcctacttctt
ggccctggcgttcccccttattaatcttttttggggggtgagggtttcga
gacagggtttctctgtatagccctggttgtcctggaactcactttgtaga
ccaggttggcttcgaactcagaaatccgcctgcctctgcctcccgagtgc
tgggattaaaggcgtgcgccaccacacccagctctaaatgtttcttaatt
tccggcgtgaattcctctatatcccgtgggtccctcaagagttttttttt
tttttaatatttttaaatttacatttcaaatgttatcccctttcctagtt
tccactccaaaaatcacctatcgcttccccactgcccctgctcctcaacc
tacccactcctgcttcctggccttggcattcccctatactggggcataga
acagtcacagaaccaagggcctctcctcccattgatgaccgactaggcca
ttctctgctacatattcagctagagccatgagtcccaccatgtattttct
ttgattggtggtttagtcccagggagctctgggggtactggttaattcat
attgttgttcctctaaggactgcaaaccccttcaggtccttgggtccttt
ctctagctcctcaatgaaggacctgtgcttcatccaaaagaatgaactgt
gag
gaattcctgttctcccaccccctttatttccccaggagcgctgccccacg
ttttctcaaggtcatgacatggattctgtatataaaactacagcagaact
tggcagttgtgtgtttcccacatggaactgattttgaaaatgtgaaggga
cgtaaaaatactatttgggctcaatgcttggtaggatcagaatctgcctg
aagagaggctattggtaaaggtgctatctcaattgtactggaaaccatga
catcgaagatcccaggaccatgaaatgaccaagaacactggcaggtatag
attgtagccagactgaacccatggtagaactgcccaagccctgtggagcc
caaaaaaactccaagtgagttccagaccctgaaaccctgagctctttgca
ctgttgggttttgtttttgcatttatctaattgcaactgtgtctgattct
tccctgttagaataagaaggacaattgagaaacttcaggcttttaaaaag
acttttgatattttatcgtcttctgtgaaccttaacttttaacatctgag
cttcagctcaggttagatttttttttttaacagactgaacttttaaaatg
tttaaattttttaaagattgtgggactttaaaaagtttaaattcttatat
tagcatcagatattgggaggataataaaagtttaccatgtaatagtgatg
catttgtgtgtcaagtttgtcgaggggtaaactttacttgggtagtttct
gtcaatttaaaacaagctagctccggggcggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53595897_53596950
seq2: B6Ng01-146A01.b_44_1096

seq1  GAATTCTCTGTTTAGCTCTGGACTTCTCTCTCTTCTCTTTTTTATACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGCTCTGGACTTCTCTCTCTTCTCTTTTTTATACTTT  50

seq1  GTTGCTTTAGTTTATTTCTGAGAATGTAGTTTAATTACATCATTCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTAGTTTATTTCTGAGAATGTAGTTTAATTACATCATTCCTTCC  100

seq1  TCCGCTGCTTCCCACAAACCCTCTCATGAGCCCCTCCCTATTCTCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGCTTCCCACAAACCCTCTCATGAGCCCCTCCCTATTCTCCTTTC  150

seq1  AACCCATGGCCTGTTGTCATTAATTGTTATTGCAGAACTATATTTCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGGCCTGTTGTCATTAATTGTTATTGCAGAACTATATTTCTTGA  200

seq1  TGAGTTAAGGCAATTCTTTTTCATGATAGTGTACTTTAGCTCTAGCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAAGGCAATTCTTTTTCATGATAGTGTACTTTAGCTCTAGCCTAC  250

seq1  ATGATTAATATGCAGTATTTTCATTGCTGCTCAGCTCTAAATGTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAATATGCAGTATTTTCATTGCTGCTCAGCTCTAAATGTTTCTTT  300

seq1  TTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAG  350

seq1  TCCTCAGACCCTCCCCCCTCCACTCCCCTACCCACCCACTCCTACTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACCCTCCCCCCTCCACTCCCCTACCCACCCACTCCTACTTCTT  400

seq1  GGCCCTGGCGTTCCCCCTTATTAATCTTTTTTGGGGGGTGAGGGTTTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCGTTCCCCCTTATTAATCTTTTTTGGGGGGTGAGGGTTTCGA  450

seq1  GACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTAGA  500

seq1  CCAGGTTGGCTTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGCTTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGC  550

seq1  TGGGATTAAAGGCGTGCGCCACCACACCCAGCTCTAAATGTTTCTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGCGCCACCACACCCAGCTCTAAATGTTTCTTAATT  600

seq1  TCCGGCGTGAATTCCTCTATATCCCGTGGGTCCCTCAAGAGTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCGTGAATTCCTCTATATCCCGTGGGTCCCTCAAGAGTTTTTTTTT  650

seq1  TTTTTAATATTTTTAAATTTACATTTCAAATGTTATCCCCTTTCCTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATTTTTAAATTTACATTTCAAATGTTATCCCCTTTCCTAGTT  700

seq1  TCCACTCCAAAAATCACCTATCGCTTCCCCACTGCCCCTGCTCCTCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCAAAAATCACCTATCGCTTCCCCACTGCCCCTGCTCCTCAACC  750

seq1  TACCCACTCCTGCTTCCTGGCCTTGGCATTCCCCTATACTGGGGCATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTCCTGCTTCCTGGCCTTGGCATTCCCCTATACTGGGGCATAGA  800

seq1  ACAGTCACAGAACCAAGGGCCTCTCCTCCCATTGATGACCGACTAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACAGAACCAAGGGCCTCTCCTCCCATTGATGACCGACTAGGCCA  850

seq1  TTCTCTGCTACATATTCAGCTAGAGCCATGAGTCCCACCATGTATTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTACATATTCAGCTAGAGCCATGAGTCCCACCATGTATTTTCT  900

seq1  TTGATTGGTGGTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTAATTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGTGGTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTAATTCAT  950

seq1  ATTGTTGTTCCTCCTAAGGGACTGCAAACCCCTTCAGGTCCTTGGGTCCT  1000
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCCT-CTAA-GGACTGCAAACCCCTTCAGGTCCTTGGGTCCT  998

seq1  TTCTCTAGCTCCTTCATTGATGACCCTGTGCTTCATCCAATAG-ATG-AC  1048
      |||||||||||| ||| ||| |  |||||||||||||||| || ||| ||
seq2  TTCTCTAGCTCC-TCAATGAAGGACCTGTGCTTCATCCAAAAGAATGAAC  1047

seq1  TGTGAG  1054
      ||||||
seq2  TGTGAG  1053

seq1: chr14_53730007_53730548
seq2: B6Ng01-146A01.g_308_853 (reverse)

seq1  CCACCG-CCCGGAGCTAGCTTGTTTTAAATTGACAGAAACTACCC-AGTA  48
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CCACCGCCCCGGAGCTAGCTTGTTTTAAATTGACAGAAACTACCCAAGTA  50

seq1  AAGTTTACCCCTCGAC-AACTTGACACACAAATGCATCACTATTACATGG  97
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTTTACCCCTCGACAAACTTGACACACAAATGCATCACTATTACATGG  100

seq1  TAAAC-TTTATTATCCTCCCAATATCTGATGCTAATATAAGAATTTAAAC  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTTATTATCCTCCCAATATCTGATGCTAATATAAGAATTTAAAC  150

seq1  TTTTTAAAGTCCCACAATCTTTAAAAAATTTAAACATTTTAAAAGTTCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTCCCACAATCTTTAAAAAATTTAAACATTTTAAAAGTTCAG  200

seq1  TCTGTTAAAAAAAAAAATCTAACCTGAGCTGAAGCTCAGATGTTAAAAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAAAAAAAAAATCTAACCTGAGCTGAAGCTCAGATGTTAAAAGT  250

seq1  TAAGGTTCACAGAAGACGATAAAATATCAAAAGTCTTTTTAAAAGCCTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCACAGAAGACGATAAAATATCAAAAGTCTTTTTAAAAGCCTGA  300

seq1  AGTTTCTCAATTGTCCTTCTTATTCTAACAGGGAAGAATCAGACACAGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAATTGTCCTTCTTATTCTAACAGGGAAGAATCAGACACAGTT  350

seq1  GCAATTAGATAAATGCAAAAACAAAACCCAACAGTGCAAAGAGCTCAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAGATAAATGCAAAAACAAAACCCAACAGTGCAAAGAGCTCAGGG  400

seq1  TTTCAGGGTCTGGAACTCACTTGGAGTTTTTTTGGGCTCCACAGGGCTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGTCTGGAACTCACTTGGAGTTTTTTTGGGCTCCACAGGGCTTG  450

seq1  GGCAGTTCTACCATGGGTTCAGTCTGGCTACAATCTATACCTGCCAGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTCTACCATGGGTTCAGTCTGGCTACAATCTATACCTGCCAGTGT  500

seq1  TCTTGGTCATTTCATGGTCCTGGGATCTTCGATGTCATGGTTTCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATTTCATGGTCCTGGGATCTTCGATGTCATGGTTTCCA  546