BAC Information

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BAC

Clone NameB6Ng01-146G09
Chromosome14 (Build37)
Map Location 112,885,043 - 112,997,223
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146G09.bB6Ng01-146G09.g
ACCDH943554DH943555
length1,0681,117
definitionDH943554|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G09, 5' end.DH943555|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,885,043 - 112,886,113)(112,996,105 - 112,997,223)
sequence
gaattcaatattttttaacacacaatattgccttaaaagtttttgttagg
cattttgctacagtaacaataaagccatagtacagaatatctccacaagt
acaaggctgttcctttactttttgtgtgggctcgtgaacagatattctct
cccctgatgggacaacatgcacagaataaagtaccagttctatataagac
caaattggagaaccagtgagtttcttacctttattaataaggtagaggtg
atggtttgtttagaggaaaaaaacaaggttcaatttgggatgatgtctct
gacaaaattgtagcctcatcacaaagtcctatgacctgttaccttgcctt
tctttatactctagcatctcccaagggttcttgatgttagggcttgacag
gaagaacttaagcacaacatccaagtgaggatattttgattctcttccta
ctctacctcccttttattgtggtgtgataatgtcctagtactgttaccta
agtgatgctgtgctgttctgcttgccctattgccatggctatgagatcag
ggttacctccactacaagacgtacacgtgtaatataatagtttcttttct
gctgctataataggaggccctgacaaaaagcaccatatggaagcagagga
tttacttagtattacggttccattggcgtccatcatggtagagagagcac
agcttcaggatcctgaggtttgccaaaagtaagaaagacaagacaacacc
aaatcttgtaactccaagtccaaatcttctcctccagattggctgccttc
aacataccactttctctctcataccccctctctgtctctgtctctgtctc
tgtctgtctctttctctctctctccctccccccctctctgtttgtctgac
tccactccctatgagagttcttactactattggttttgttgctctgacac
caccaaatcttagggtcacccactgaactgaaggcttcacaatctcagcc
tccacaccatcacacagggattgggaccctatattattatatccttaacc
tcaacggttctcggatat
gaattcaaaaatgaactatatctggaataacaagcagtgtatggataaga
caggaatacttactgtcaaaataatggtaaatataatgagaatcaggaat
gagagaatgtgggaagccacatgtgctgttgctgagtggcactgactact
gctggccaccacgcattagtttggacaaacaaccaatgtgtacatatgca
gtaaagttttttgcaaagacactgcctggcccgggcatgataatgaggtt
ctgtaaggtactgagagtataaccaatcagatgtgagacatgcaaatgag
gtatgataatgaggttctgtaaggtactgagagagagtagccaatcagat
gaggaacatgcaaatgaggcttagtgcataaccaatctgggtgtgagaca
cgcctctcctaggcctataaaagcagcaccagttctgggctcggggtctt
ttcgcctctacaatcaagctctcccaataaacgtgtgtagaaggatcctg
ttgcagcgtagttcttcctggccagtcgagcacgcgcaagaagtcaaatg
tgccttacaataatactagtaatacaatgactcatgccattttagaaatt
gtgacaccatttattatttgttttagatatttaaaactagaattatctct
agtaaatgaacgccaaagagattatataaattaattctcatttttgcaat
gtgggtttgctggttaatcaaggcataacttggcagctccacggcatgac
atctgagggatggaccagtgtcaaaaacgttccattacaataggaaaaca
ggtgcaggaaggtcggcattcatattattgcatttagttatggctgacaa
agtgacatttaagatataacaaaacatttttgaaatgtaagcattgagaa
agtaaacttttaataaaccttacaataaaaattcatataagctattatat
aaataaataatcatattttaccttgtattttataattcttagtaagaaga
tttgaaaataatagtttcaacatatataataaactgatgttaatgttgtt
gtgaataagatatcaaataggttagtccacttgtaagcctaattcccatc
gaattttaaatatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112885043_112886113
seq2: B6Ng01-146G09.b_47_1114

seq1  GAATTCAATATTTTTTAACACACAATATTGCCTTAAAAGTTTTTGTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTTTTTAACACACAATATTGCCTTAAAAGTTTTTGTTAGG  50

seq1  CATTTTGCTACAGTAACAATAAAGCCATAGTACAGAATATCTCCACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTACAGTAACAATAAAGCCATAGTACAGAATATCTCCACAAGT  100

seq1  ACAAGGCTGTTCCTTTACTTTTTGTGTGGGCTCGTGAACAGATATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTGTTCCTTTACTTTTTGTGTGGGCTCGTGAACAGATATTCTCT  150

seq1  CCCCTGATGGGACAACATGCACAGAATAAAGTACCAGTTCTATATAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGATGGGACAACATGCACAGAATAAAGTACCAGTTCTATATAAGAC  200

seq1  CAAATTGGAGAACCAGTGAGTTTCTTACCTTTATTAATAAGGTAGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGAGAACCAGTGAGTTTCTTACCTTTATTAATAAGGTAGAGGTG  250

seq1  ATGGTTTGTTTAGAGGAAAAAAACAAGGTTCAATTTGGGATGATGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGTTTAGAGGAAAAAAACAAGGTTCAATTTGGGATGATGTCTCT  300

seq1  GACAAAATTGTAGCCTCATCACAAAGTCCTATGACCTGTTACCTTGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATTGTAGCCTCATCACAAAGTCCTATGACCTGTTACCTTGCCTT  350

seq1  TCTTTATACTCTAGCATCTCCCAAGGGTTCTTGATGTTAGGGCTTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATACTCTAGCATCTCCCAAGGGTTCTTGATGTTAGGGCTTGACAG  400

seq1  GAAGAACTTAAGCACAACATCCAAGTGAGGATATTTTGATTCTCTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTAAGCACAACATCCAAGTGAGGATATTTTGATTCTCTTCCTA  450

seq1  CTCTACCTCCCTTTTATTGTGGTGTGATAATGTCCTAGTACTGTTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTCCCTTTTATTGTGGTGTGATAATGTCCTAGTACTGTTACCTA  500

seq1  AGTGATGCTGTGCTGTTCTGCTTGCCCTATTGCCATGGCTATGAGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCTGTGCTGTTCTGCTTGCCCTATTGCCATGGCTATGAGATCAG  550

seq1  GGTTACCTCCACTACAAGACGTACACGTGTAATATAATAGTTTCTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTCCACTACAAGACGTACACGTGTAATATAATAGTTTCTTTTCT  600

seq1  GCTGCTATAATAGGAGGCCCTGACAAAAAGCACCATATGGAAGCAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATAATAGGAGGCCCTGACAAAAAGCACCATATGGAAGCAGAGGA  650

seq1  TTTACTTAGTATTACGGTTCCATTGGCGTCCATCATGGTAGAGAGAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGTATTACGGTTCCATTGGCGTCCATCATGGTAGAGAGAGCAC  700

seq1  AGCTTCAGGATCCTGAGGTTTGCCAAAAGTAAGAAAGACAAGACAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGGATCCTGAGGTTTGCCAAAAGTAAGAAAGACAAGACAACACC  750

seq1  AAATCTTGTAACTCCAAGTCCAAATCTTCTCCTCCAGATTGGCTGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTAACTCCAAGTCCAAATCTTCTCCTCCAGATTGGCTGCCTTC  800

seq1  AACATACCACTTTCTCTCTCATACCCCCTCTCTGTCTCTGTCTCTGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCACTTTCTCTCTCATACCCCCTCTCTGTCTCTGTCTCTGTCTC  850

seq1  TGTCTGTCTCTTTCTCTCTCTCTCCCTCCCCCCCCTCTCTGTTTGTCTGA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCTGTCTCTTTCTCTCTCTCTCCCT-CCCCCCCTCTCTGTTTGTCTGA  899

seq1  CTCCACTCCCTATGAGAAGTTCTTACTACTATTGGTTTTGTGGCTCTGAC  950
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  CTCCACTCCCTATGAG-AGTTCTTACTACTATTGGTTTTGTTGCTCTGAC  948

seq1  ACCACCAAAATCTTAGGGTCA-CCACTGAACTGAAGGCTTCACAATCTCA  999
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCACC-AAATCTTAGGGTCACCCACTGAACTGAAGGCTTCACAATCTCA  997

seq1  GCCTCACACAACCATCACACAGGGATTTGGACCCTATATATATATAT-CT  1048
      ||||| ||| ||||||||||||||||| |||||||||||   ||||| ||
seq2  GCCTC-CAC-ACCATCACACAGGGATTGGGACCCTATATTATTATATCCT  1045

seq1  TAACCTCAACAGCTCTCGGATAT  1071
      |||||||||| | ||||||||||
seq2  TAACCTCAACGGTTCTCGGATAT  1068

seq1: chr14_112996105_112997223
seq2: B6Ng01-146G09.g_67_1183 (reverse)

seq1  AAATATTATTTAAAA-TCGATGTGGATTTAGGCTTACAAGTTGACTATAC  49
      ||||| ||||||||| |||||| ||| |||||||||||||| |||||  |
seq2  AAATA-TATTTAAAATTCGATG-GGAATTAGGCTTACAAGTGGACTAACC  48

seq1  TATTTTGATATCTTATTCACAACAACATT-ACATCAGTTTATTAATATAT  98
      || |||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TA-TTTGATATCTTATTCACAACAACATTAACATCAGTTTATT-ATATAT  96

seq1  GTTGAAACTATTATTCTCAAATCTTCTTACTAAGAATTATAAAATACAAG  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGAAACTATTATTTTCAAATCTTCTTACTAAGAATTATAAAATACAAG  146

seq1  GTAAAATATGATTATTTATTTATATAATTAGCTTATATGAATTTTTATTG  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAAAATATGATTATTTATTTATATAA-TAGCTTATATGAATTTTTATTG  195

seq1  TAAGGTTTATT-AAAGTTTACTTTCTCAATGCTTACATTTCAAAAATGTT  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTATTAAAAGTTTACTTTCTCAATGCTTACATTTCAAAAATGTT  245

seq1  TTGTTATATCTTATATGTCACTTTGTCAGCCATAACTAAATGCAATAATA  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATCTTAAATGTCACTTTGTCAGCCATAACTAAATGCAATAATA  295

seq1  TGAATGCCGACCTTCCTGCACCTGTTTTCCTATTGTAATGGAACGTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCGACCTTCCTGCACCTGTTTTCCTATTGTAATGGAACGTTTTT  345

seq1  GACACTGGTCCATCCCTCAGATGTCATGCCGTGGAGCTGCCAAGTTATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGTCCATCCCTCAGATGTCATGCCGTGGAGCTGCCAAGTTATGC  395

seq1  CTTGATTAACCAGCAAACCCACATTGCAAAAATGAGAATTAATTTATATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAACCAGCAAACCCACATTGCAAAAATGAGAATTAATTTATATA  445

seq1  ATCTCTTTGGCGTTCATTTACTAGAGATAATTCTAGTTTTAAATATCTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTGGCGTTCATTTACTAGAGATAATTCTAGTTTTAAATATCTAA  495

seq1  AACAAATAATAAATGGTGTCACAATTTCTAAAATGGCATGAGTCATTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAATAAATGGTGTCACAATTTCTAAAATGGCATGAGTCATTGTA  545

seq1  TTACTAGTATTATTGTAAGGCACATTTGACTTCTTGCGCGTGCTCGACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTATTATTGTAAGGCACATTTGACTTCTTGCGCGTGCTCGACTG  595

seq1  GCCAGGAAGAACTACGCTGCAACAGGATCCTTCTACACACGTTTATTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGAACTACGCTGCAACAGGATCCTTCTACACACGTTTATTGGG  645

seq1  AGAGCTTGATTGTAGAGGCGAAAAGACCCCGAGCCCAGAACTGGTGCTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGATTGTAGAGGCGAAAAGACCCCGAGCCCAGAACTGGTGCTGC  695

seq1  TTTTATAGGCCTAGGAGAGGCGTGTCTCACACCCAGATTGGTTATGCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGGCCTAGGAGAGGCGTGTCTCACACCCAGATTGGTTATGCACT  745

seq1  AAGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCAGTACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCAGTACC  795

seq1  TTACAGAACCTCATTATCATACCTCATTTGCATGTCTCACATCTGATTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACCTCATTATCATACCTCATTTGCATGTCTCACATCTGATTGG  845

seq1  TTATACTCTCAGTACCTTACAGAACCTCATTATCATGCCCGGGCCAGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTCAGTACCTTACAGAACCTCATTATCATGCCCGGGCCAGGCA  895

seq1  GTGTCTTTGCAAAAAACTTTACTGCATATGTACACATTGGTTGTTTGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTGCAAAAAACTTTACTGCATATGTACACATTGGTTGTTTGTCC  945

seq1  AAACTAATGCGTGGTGGCCAGCAGTAGTCAGTGCCACTCAGCAACAGCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGCGTGGTGGCCAGCAGTAGTCAGTGCCACTCAGCAACAGCAC  995

seq1  ATGTGGCTTCCCACATTCTCTCATTCCTGATTCTCATTATATTTACCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTCCCACATTCTCTCATTCCTGATTCTCATTATATTTACCATT  1045

seq1  ATTTTGACAGTAAGTATTCCTGTCTTATCCATACACTGCTTGTTATTCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACAGTAAGTATTCCTGTCTTATCCATACACTGCTTGTTATTCCA  1095

seq1  GATATAGTTCATTTTTGAATTC  1119
      ||||||||||||||||||||||
seq2  GATATAGTTCATTTTTGAATTC  1117