BAC Information

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BAC

Clone NameB6Ng01-146I24
Chromosome14 (Build37)
Map Location 30,469,200 - 30,470,235
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I24.bB6Ng01-146I24.g
ACCDH943675DH943676
length5471,038
definitionDH943675|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I24, 5' end.DH943676|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgtcctgtcttccttcagtgatggactacaatgtagaagtgtaagccga
ataaaccctttcaccttcaacttgcttttttggtcatagtgtttcctcaa
agcaccaggaactctaagtcagtataaatggtcttgctttatataaccca
gactggccttgaactcatgatcttctttctttatctttccaagttctggg
cctacagatctaccccactatgcttagtctttcattctctctctctctct
ctctctctctctctctctctctctctcactctgtgtgtaaaagtatatat
atgtgtgtagatttatatttatagatatgtctggagataagaaaaaagag
agagagagcaagtgtgtatttgtttctcgtgttatttttttttgttagat
atttattgatatgtgtatccctgcgggcagtctacattatagcatacaca
cagacatatatgcataaaaagtgagagtgtaaaaaaaagcgaatgagaaa
aaggggggcatacttctttgcccacatatacgctgtgattggttgaa
gaattcttgttagggaattggtccaaggttataatttttctcctggttcc
tttgtgaggatagtctttggcttttctgggttatgagtaatgagcacaag
gccccttctgtaagtacccacagaacccagaattccaaaatagctagtta
attatttcccaataaagtcacattagtggtggtattagcagccaaattct
ctagaatgtagactgccactcattttgcacttggcaggccactctgacat
aatttgtagtgtttgtcccacccctccaccctgcaattcaattggattca
gtcttcaactgcctttaataagtcagtagaataaatatgcatgcacacgc
acacacacacgcgtgtgtgtgtgtgtatgtatataattttttataagttt
caatgacctcagttatcattgaaatgaaggctcacatgtgtggaaggaat
tcttagaatcatggctcatatatcccaacatttcagtctttgcttagcca
gaggaatgactggctcacagttgtgttggactcagttccctaagaaggga
acaacaatgagtctcattaaggtttaaggaactgtttttcatgaagacag
tcttctggtgtggtctgtctctggttttgaaatcttttcagaattaaaaa
tatggatcctttataaacaaattgacaagggtagatccgcctctgagacc
tgtataagttggaatgggtttgacacagtcagggccagcttcatggaact
gtagcctgcatactcacctaaggtcctgccttagaaggaccttacttttg
gattcatttgaaattatctatcattttaggattgtctcattgtcttccct
tctgcaaatgatgtagccagcctctggggagttaccaatgtataaagaca
taacaagcggcatgtaagggcctttgtgggattgtgagggattccacgtc
cactacgagttaggggaacaatgacttctctacgttttctgctccttatt
catgggtggcataacttttcctctgaacttggtcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30469200_30470235
seq2: B6Ng01-146I24.g_68_1105 (reverse)

seq1  AAATGACCAAGTACAGAGG-AAAGTTATGCCA-CCATGAATAATGAGCAG  48
      |||||||||||| |||||| |||||||||||| |||||||||| ||||||
seq2  AAATGACCAAGTTCAGAGGAAAAGTTATGCCACCCATGAATAAGGAGCAG  50

seq1  AAAACGTATGAGAAGTCATTGTTACCCT-ACTCGTAGTGGACGTGGAATC  97
      |||||||| |||||||||||||| |||| |||||||||||||||||||||
seq2  AAAACGTA-GAGAAGTCATTGTTCCCCTAACTCGTAGTGGACGTGGAATC  99

seq1  CCTCAC-ATCCCTACAAGGGCCTTACATGCCGCTTGTTATTGTCTTTATA  146
      |||||| |||||   |||| ||||||||||||||||||| ||||||||||
seq2  CCTCACAATCCCACAAAGGCCCTTACATGCCGCTTGTTA-TGTCTTTATA  148

seq1  CATTTGGTAACTCCCCAGAGGCTGGCTACATCATTTGCAGAAGGGAAGAC  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTGGTAACTCCCCAGAGGCTGGCTACATCATTTGCAGAAGGGAAGAC  197

seq1  AATGAGACAATCCTAAAATGATAGATAATTTCAAATGAATCCAAAAGT-A  245
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGAGACAATCCTAAAATGATAGATAATTTCAAATGAATCCAAAAGTAA  247

seq1  GGTCCTTCTAAGGCAGGACCTTAGGTGAGTATGCAGGCTACAGTTCCATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTAAGGCAGGACCTTAGGTGAGTATGCAGGCTACAGTTCCATG  297

seq1  AAGCTGGCCCTGACTGTGTCAAACCCATTCCAACTTATACAGGTCTCAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCCCTGACTGTGTCAAACCCATTCCAACTTATACAGGTCTCAGA  347

seq1  GGCGGATCTACCCTTGTCAATTTGTTTATAAAGGATCCATATTTTTAATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGATCTACCCTTGTCAATTTGTTTATAAAGGATCCATATTTTTAATT  397

seq1  CTGAAAAGATTTCAAAACCAGAGACAGACCACACCAGAAGACTGTCTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGATTTCAAAACCAGAGACAGACCACACCAGAAGACTGTCTTCA  447

seq1  TGAAAAACAGTTCCTTAAACCTTAATGAGACTCATTGTTGTTCCCTTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACAGTTCCTTAAACCTTAATGAGACTCATTGTTGTTCCCTTCTT  497

seq1  AGGGAACTGAGTCCAACACAACTGTGAGCCAGTCATTCCTCTGGCTAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTGAGTCCAACACAACTGTGAGCCAGTCATTCCTCTGGCTAAGC  547

seq1  AAAGACTGAAATGTTGGGATATATGAGCCATGATTCTAAGAATTCCTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGAAATGTTGGGATATATGAGCCATGATTCTAAGAATTCCTTCC  597

seq1  ACACATGTGAGCCTTCATTTCAATGATAACTGAGGTCATTGAAACTTATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGAGCCTTCATTTCAATGATAACTGAGGTCATTGAAACTTATA  647

seq1  AAAAATTATATACATACACACACACACACGCGTGTGTGTGTGCGTGTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATATACATACACACACACACACGCGTGTGTGTGTGCGTGTGCA  697

seq1  TGCATATTTATTCTACTGACTTATTAAAGGCAGTTGAAGACTGAATCCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTTATTCTACTGACTTATTAAAGGCAGTTGAAGACTGAATCCAA  747

seq1  TTGAATTGCAGGGTGGAGGGGTGGGACAAACACTACAAATTATGTCAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCAGGGTGGAGGGGTGGGACAAACACTACAAATTATGTCAGAG  797

seq1  TGGCCTGCCAAGTGCAAAATGAGTGGCAGTCTACATTCTAGAGAATTTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCCAAGTGCAAAATGAGTGGCAGTCTACATTCTAGAGAATTTGG  847

seq1  CTGCTAATACCACCACTAATGTGACTTTATTGGGAAATAATTAACTAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATACCACCACTAATGTGACTTTATTGGGAAATAATTAACTAGCT  897

seq1  ATTTTGGAATTCTGGGTTCTGTGGGTACTTACAGAAGGGGCCTTGTGCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAATTCTGGGTTCTGTGGGTACTTACAGAAGGGGCCTTGTGCTC  947

seq1  ATTACTCATAACCCAGAAAAGCCAAAGACTATCCTCACAAAGGAACCAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCATAACCCAGAAAAGCCAAAGACTATCCTCACAAAGGAACCAGG  997

seq1  AGAAAAATTATAACCTTGGACCAATTCCCTAACAAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTATAACCTTGGACCAATTCCCTAACAAGAATTC  1038